Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
ABCA1O95477 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
ABCA1O95477 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.12■□□□□ 0.81
ABCA1O95477 RPS2P7-201ENST00000447334 885 ntBASIC20.12■□□□□ 0.81
ABCA1O95477 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.12■□□□□ 0.81
ABCA1O95477 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.12■□□□□ 0.81
ABCA1O95477 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA1O95477 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA1O95477 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA1O95477 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA1O95477 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
ABCA1O95477 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.11■□□□□ 0.81
ABCA1O95477 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.1■□□□□ 0.81
ABCA1O95477 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.1■□□□□ 0.81
ABCA1O95477 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.1■□□□□ 0.81
ABCA1O95477 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
ABCA1O95477 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
ABCA1O95477 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
ABCA1O95477 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.09■□□□□ 0.81
ABCA1O95477 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
ABCA1O95477 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.09■□□□□ 0.81
ABCA1O95477 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ABCA1O95477 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
ABCA1O95477 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ABCA1O95477 AC131281.2-201ENST00000520478 145 ntBASIC20.08■□□□□ 0.81
ABCA1O95477 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
ABCA1O95477 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.08■□□□□ 0.8
ABCA1O95477 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ABCA1O95477 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
ABCA1O95477 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ABCA1O95477 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 UNC93B8-201ENST00000511903 705 ntBASIC20.07■□□□□ 0.8
ABCA1O95477 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
ABCA1O95477 KRT16P3-201ENST00000439127 1283 ntBASIC20.07■□□□□ 0.8
ABCA1O95477 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA1O95477 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.06■□□□□ 0.8
ABCA1O95477 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA1O95477 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA1O95477 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA1O95477 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA1O95477 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA1O95477 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA1O95477 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
ABCA1O95477 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.05■□□□□ 0.8
ABCA1O95477 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.05■□□□□ 0.8
ABCA1O95477 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.05■□□□□ 0.8
ABCA1O95477 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.05■□□□□ 0.8
ABCA1O95477 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA1O95477 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.05■□□□□ 0.8
ABCA1O95477 MIR638-201ENST00000385237 100 ntBASIC20.05■□□□□ 0.8
ABCA1O95477 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
ABCA1O95477 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ABCA1O95477 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.04■□□□□ 0.8
ABCA1O95477 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ABCA1O95477 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
ABCA1O95477 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ABCA1O95477 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ABCA1O95477 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.03■□□□□ 0.8
ABCA1O95477 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA1O95477 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA1O95477 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA1O95477 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
ABCA1O95477 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.02■□□□□ 0.8
ABCA1O95477 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA1O95477 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA1O95477 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA1O95477 LONRF2P2-201ENST00000439212 571 ntBASIC20.02■□□□□ 0.8
ABCA1O95477 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA1O95477 LINC01003-201ENST00000564834 1764 ntBASIC20.02■□□□□ 0.79
ABCA1O95477 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
ABCA1O95477 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ABCA1O95477 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA1O95477 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA1O95477 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA1O95477 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ABCA1O95477 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
ABCA1O95477 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ABCA1O95477 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20■□□□□ 0.79
ABCA1O95477 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20■□□□□ 0.79
ABCA1O95477 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
ABCA1O95477 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms