RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 NISCHQ9Y2I1 1504 aa52.75■■■■■ 6.04
C9orf40-201ENST00000376854 CCDC180Q9P1Z9 1646 aa45.04■■■■■ 4.8
C9orf40-201ENST00000376854 SHROOM4Q9ULL8 1493 aa44.65■■■■■ 4.74
C9orf40-201ENST00000376854 ZCCHC6Q5VYS8 1495 aaKnown RBP44.56■■■■■ 4.72
C9orf40-201ENST00000376854 SUPT5HO00267 1087 aaKnown RBP43.79■■■■■ 4.6
C9orf40-201ENST00000376854 DCAF8L2P0C7V8 631 aa43.75■■■■■ 4.59
C9orf40-201ENST00000376854 DCAF1Q9Y4B6 1507 aa43.3■■■■■ 4.52
C9orf40-201ENST00000376854 CHIC1Q5VXU3 224 aa42.66■■■■■ 4.42
C9orf40-201ENST00000376854 MYO15BQ96JP2 1530 aa42.47■■■■■ 4.39
C9orf40-201ENST00000376854 SCRIBQ14160 1630 aa42.15■■■■■ 4.34
C9orf40-201ENST00000376854 ABCC9O60706 1549 aa42.03■■■■■ 4.32
C9orf40-201ENST00000376854 NACADO15069 1562 aa41.72■■■■■ 4.27
C9orf40-201ENST00000376854 RSF1Q96T23 1441 aaPredicted RBP41.6■■■■■ 4.25
C9orf40-201ENST00000376854 HRCP23327 699 aa41.49■■■■■ 4.23
C9orf40-201ENST00000376854 PCGF6Q9BYE7 350 aa41.38■■■■■ 4.22
C9orf40-201ENST00000376854 LOC105371045A0A1W2PR82 267 aa41.35■■■■■ 4.21
C9orf40-201ENST00000376854 CECR2Q9BXF3 1484 aa41.19■■■■■ 4.18
C9orf40-201ENST00000376854 RB1CC1Q8TDY2 1594 aa41.12■■■■■ 4.17
C9orf40-201ENST00000376854 MROH2BQ7Z745 1585 aa41.01■■■■■ 4.16
C9orf40-201ENST00000376854 TRIM41Q8WV44 630 aa40.83■■■■■ 4.13
C9orf40-201ENST00000376854 WIZO95785 1651 aa40.77■■■■■ 4.12
C9orf40-201ENST00000376854 TRIM26Q12899 539 aaPredicted RBP40.65■■■■■ 4.1
C9orf40-201ENST00000376854 UNC13AQ9UPW8 1703 aa40.54■■■■■ 4.08
C9orf40-201ENST00000376854 BAZ1AQ9NRL2 1556 aaPredicted RBP40.53■■■■■ 4.08
C9orf40-201ENST00000376854 PPARGC1BQ86YN6 1023 aaKnown RBP40.53■■■■■ 4.08
C9orf40-201ENST00000376854 FAM9AQ8IZU1 332 aaPredicted RBP40.44■■■■■ 4.06
C9orf40-201ENST00000376854 SMARCA4P51532 1647 aa40.26■■■■■ 4.04
C9orf40-201ENST00000376854 TOP2AP11388 1531 aaKnown RBP40.12■■■■■ 4.01
C9orf40-201ENST00000376854 PABPN1Q86U42 306 aaKnown RBP eCLIP40.1■■■■■ 4.01
C9orf40-201ENST00000376854 EIF4G1Q04637 1599 aaKnown RBP40.09■■■■■ 4.01
C9orf40-201ENST00000376854 BICRAQ9NZM4 1560 aa40.06■■■■■ 4
C9orf40-201ENST00000376854 EHMT2Q96KQ7 1210 aa40.04■■■■■ 4
C9orf40-201ENST00000376854 CCDC88BA6NC98 1476 aa39.94■■■■□ 3.98
C9orf40-201ENST00000376854 SMARCA2P51531 1590 aa39.9■■■■□ 3.98
C9orf40-201ENST00000376854 ZEB1P37275 1124 aaPredicted RBP39.83■■■■□ 3.97
C9orf40-201ENST00000376854 ABCC8Q09428 1581 aa39.71■■■■□ 3.95
C9orf40-201ENST00000376854 PEG3Q9GZU2 1588 aa39.51■■■■□ 3.92
C9orf40-201ENST00000376854 ATAD2BQ9ULI0 1458 aa39.32■■■■□ 3.89
C9orf40-201ENST00000376854 SOGA1O94964 1423 aa39.26■■■■□ 3.88
C9orf40-201ENST00000376854 BAZ1BQ9UIG0 1483 aaKnown RBP39.17■■■■□ 3.86
C9orf40-201ENST00000376854 WRNQ14191 1432 aaPredicted RBP eCLIP39.13■■■■□ 3.85
C9orf40-201ENST00000376854 EEA1Q15075 1411 aa39.13■■■■□ 3.85
C9orf40-201ENST00000376854 CEP162Q5TB80 1403 aa39.12■■■■□ 3.85
C9orf40-201ENST00000376854 RUSC2Q8N2Y8 1516 aa39.1■■■■□ 3.85
C9orf40-201ENST00000376854 TNIKQ9UKE5 1360 aa39.08■■■■□ 3.85
C9orf40-201ENST00000376854 CSRNP3Q8WYN3 585 aa39.05■■■■□ 3.84
C9orf40-201ENST00000376854 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.95■■■■□ 3.83
C9orf40-201ENST00000376854 SYNJ1O43426 1573 aa38.93■■■■□ 3.82
C9orf40-201ENST00000376854 CCER1Q8TC90 406 aaPredicted RBP38.89■■■■□ 3.82
C9orf40-201ENST00000376854 UBTFP17480 764 aaKnown RBP38.88■■■■□ 3.81
C9orf40-201ENST00000376854 GOLGA3Q08378 1498 aa38.84■■■■□ 3.81
C9orf40-201ENST00000376854 TTBK1Q5TCY1 1321 aaPredicted RBP38.79■■■■□ 3.8
C9orf40-201ENST00000376854 CEP164Q9UPV0 1460 aa38.61■■■■□ 3.77
C9orf40-201ENST00000376854 NCAPD3P42695 1498 aa38.61■■■■□ 3.77
C9orf40-201ENST00000376854 HMGXB3Q12766 1538 aa38.58■■■■□ 3.77
C9orf40-201ENST00000376854 KIF21BO75037 1637 aa38.56■■■■□ 3.76
C9orf40-201ENST00000376854 TOP2BQ02880 1626 aa38.47■■■■□ 3.75
C9orf40-201ENST00000376854 CLIP1P30622 1438 aa38.38■■■■□ 3.74
C9orf40-201ENST00000376854 BIVM-ERCC5R4GMW8 1640 aa38.35■■■■□ 3.73
C9orf40-201ENST00000376854 RAPGEF2Q9Y4G8 1499 aa38.32■■■■□ 3.73
C9orf40-201ENST00000376854 VPS8Q8N3P4 1428 aa38.24■■■■□ 3.71
C9orf40-201ENST00000376854 SCAF1Q9H7N4 1312 aaKnown RBP38.22■■■■□ 3.71
C9orf40-201ENST00000376854 CUX1P39880 1505 aa38.21■■■■□ 3.71
C9orf40-201ENST00000376854 CFTRP13569 1480 aa38.2■■■■□ 3.71
C9orf40-201ENST00000376854 DIEXFQ68CQ4 756 aaKnown RBP38.16■■■■□ 3.7
C9orf40-201ENST00000376854 RANGAP1P46060 587 aaPredicted RBP38.08■■■■□ 3.69
C9orf40-201ENST00000376854 APLP2Q06481 763 aa38.07■■■■□ 3.68
C9orf40-201ENST00000376854 HNRNPUL2Q1KMD3 747 aaKnown RBP38.04■■■■□ 3.68
C9orf40-201ENST00000376854 PRXQ9BXM0 1461 aa37.99■■■■□ 3.67
C9orf40-201ENST00000376854 ERICH3Q5RHP9 1530 aa37.94■■■■□ 3.66
C9orf40-201ENST00000376854 ACIN1Q9UKV3 1341 aaKnown RBP37.89■■■■□ 3.66
C9orf40-201ENST00000376854 ZNF316A6NFI3 1004 aaPredicted RBP37.89■■■■□ 3.66
C9orf40-201ENST00000376854 KIF27Q86VH2 1401 aa37.88■■■■□ 3.65
C9orf40-201ENST00000376854 PRDM2Q13029 1718 aa37.87■■■■□ 3.65
C9orf40-201ENST00000376854 CC2D2AQ9P2K1 1620 aa37.86■■■■□ 3.65
C9orf40-201ENST00000376854 CADPSQ9ULU8 1353 aa37.84■■■■□ 3.65
C9orf40-201ENST00000376854 NEUROD1Q13562 356 aa37.8■■■■□ 3.64
C9orf40-201ENST00000376854 ARAP1Q96P48 1450 aa37.75■■■■□ 3.63
C9orf40-201ENST00000376854 CENPBP07199 599 aaPredicted RBP37.71■■■■□ 3.63
C9orf40-201ENST00000376854 CUX2O14529 1486 aa37.62■■■■□ 3.61
C9orf40-201ENST00000376854 FGD5Q6ZNL6 1462 aa37.57■■■■□ 3.61
C9orf40-201ENST00000376854 PELP1Q8IZL8 1130 aaKnown RBP37.56■■■■□ 3.6
C9orf40-201ENST00000376854 IGF1RP08069 1367 aa37.53■■■■□ 3.6
C9orf40-201ENST00000376854 KANK4Q5T7N3 995 aaPredicted RBP37.53■■■■□ 3.6
C9orf40-201ENST00000376854 FANCD2Q9BXW9 1451 aa37.48■■■■□ 3.59
C9orf40-201ENST00000376854 ARHGAP35Q9NRY4 1499 aa37.44■■■■□ 3.58
C9orf40-201ENST00000376854 GTF3C3Q9Y5Q9 886 aa37.43■■■■□ 3.58
C9orf40-201ENST00000376854 CLSPNQ9HAW4 1339 aa37.39■■■■□ 3.58
C9orf40-201ENST00000376854 NESP48681 1621 aa37.37■■■■□ 3.57
C9orf40-201ENST00000376854 RRBP1Q9P2E9 1410 aaKnown RBP37.36■■■■□ 3.57
C9orf40-201ENST00000376854 DHX57Q6P158 1386 aaKnown RBP37.35■■■■□ 3.57
C9orf40-201ENST00000376854 CARMIL1Q5VZK9 1371 aa37.34■■■■□ 3.57
C9orf40-201ENST00000376854 MIER1Q8N108 512 aa37.31■■■■□ 3.56
C9orf40-201ENST00000376854 DNMBPQ6XZF7 1577 aa37.25■■■■□ 3.55
C9orf40-201ENST00000376854 RAD54L2Q9Y4B4 1467 aa37.25■■■■□ 3.55
C9orf40-201ENST00000376854 TOPBP1Q92547 1522 aa37.21■■■■□ 3.55
C9orf40-201ENST00000376854 YTHDC1Q96MU7 727 aaKnown RBP37.21■■■■□ 3.55
C9orf40-201ENST00000376854 CCNB3Q8WWL7 1395 aa37.2■■■■□ 3.55
C9orf40-201ENST00000376854 POLA1P09884 1462 aaPredicted RBP37.17■■■■□ 3.54
C9orf40-201ENST00000376854 ABCA10Q8WWZ4 1543 aa37.11■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms