Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
ABCA1O95477 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC28.52■■■□□ 2.16
ABCA1O95477 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
ABCA1O95477 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
ABCA1O95477 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
ABCA1O95477 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
ABCA1O95477 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
ABCA1O95477 AL356512.1-201ENST00000607453 1739 ntBASIC27.26■■□□□ 1.95
ABCA1O95477 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
ABCA1O95477 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC27.18■■□□□ 1.94
ABCA1O95477 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC27.15■■□□□ 1.94
ABCA1O95477 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
ABCA1O95477 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC27.04■■□□□ 1.92
ABCA1O95477 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
ABCA1O95477 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
ABCA1O95477 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC26.87■■□□□ 1.89
ABCA1O95477 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
ABCA1O95477 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
ABCA1O95477 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC26.65■■□□□ 1.86
ABCA1O95477 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
ABCA1O95477 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
ABCA1O95477 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
ABCA1O95477 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC26.3■■□□□ 1.8
ABCA1O95477 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
ABCA1O95477 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
ABCA1O95477 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
ABCA1O95477 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
ABCA1O95477 INO80B-203ENST00000409917 796 ntTSL 2 BASIC26.16■■□□□ 1.78
ABCA1O95477 AC006077.2-201ENST00000623591 457 ntBASIC26.07■■□□□ 1.76
ABCA1O95477 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.07■■□□□ 1.76
ABCA1O95477 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
ABCA1O95477 ZNRF2P1-201ENST00000441407 443 ntBASIC26.01■■□□□ 1.75
ABCA1O95477 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC25.97■■□□□ 1.75
ABCA1O95477 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC25.89■■□□□ 1.73
ABCA1O95477 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC25.83■■□□□ 1.73
ABCA1O95477 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC25.83■■□□□ 1.72
ABCA1O95477 AC015813.7-201ENST00000623294 581 ntBASIC25.73■■□□□ 1.71
ABCA1O95477 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
ABCA1O95477 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
ABCA1O95477 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
ABCA1O95477 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC25.49■■□□□ 1.67
ABCA1O95477 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC25.47■■□□□ 1.67
ABCA1O95477 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
ABCA1O95477 AP002365.1-201ENST00000603448 772 ntBASIC25.42■■□□□ 1.66
ABCA1O95477 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
ABCA1O95477 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.35■■□□□ 1.65
ABCA1O95477 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
ABCA1O95477 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
ABCA1O95477 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
ABCA1O95477 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
ABCA1O95477 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
ABCA1O95477 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
ABCA1O95477 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC25.12■■□□□ 1.61
ABCA1O95477 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.12■■□□□ 1.61
ABCA1O95477 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
ABCA1O95477 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC25.11■■□□□ 1.61
ABCA1O95477 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
ABCA1O95477 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
ABCA1O95477 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.08■■□□□ 1.61
ABCA1O95477 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.05■■□□□ 1.6
ABCA1O95477 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA1O95477 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ABCA1O95477 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.01■■□□□ 1.59
ABCA1O95477 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25■■□□□ 1.59
ABCA1O95477 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.99■■□□□ 1.59
ABCA1O95477 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
ABCA1O95477 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC24.98■■□□□ 1.59
ABCA1O95477 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC24.98■■□□□ 1.59
ABCA1O95477 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
ABCA1O95477 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
ABCA1O95477 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
ABCA1O95477 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
ABCA1O95477 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
ABCA1O95477 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
ABCA1O95477 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
ABCA1O95477 DYNLL1-208ENST00000550178 581 ntBASIC24.74■■□□□ 1.55
ABCA1O95477 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC24.74■■□□□ 1.55
ABCA1O95477 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
ABCA1O95477 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
ABCA1O95477 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA1O95477 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
ABCA1O95477 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
ABCA1O95477 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
ABCA1O95477 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
ABCA1O95477 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.63■■□□□ 1.53
ABCA1O95477 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
ABCA1O95477 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
ABCA1O95477 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.57■■□□□ 1.52
ABCA1O95477 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
ABCA1O95477 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
ABCA1O95477 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC24.53■■□□□ 1.52
ABCA1O95477 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.49■■□□□ 1.51
ABCA1O95477 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
ABCA1O95477 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.45■■□□□ 1.5
ABCA1O95477 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
ABCA1O95477 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.44■■□□□ 1.5
ABCA1O95477 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.43■■□□□ 1.5
ABCA1O95477 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
ABCA1O95477 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
ABCA1O95477 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC24.42■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms