RNA–Protein interactions for RNA: ENST00000451876.5

CPSF4-207, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5 BASIC

Gene CPSF4, Length 1,644 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-207ENST00000451876 NISCHQ9Y2I1 1504 aa57.58■■■■■ 6.81
CPSF4-207ENST00000451876 CCDC180Q9P1Z9 1646 aa50.97■■■■■ 5.75
CPSF4-207ENST00000451876 ABCC9O60706 1549 aa49.29■■■■■ 5.48
CPSF4-207ENST00000451876 ZCCHC6Q5VYS8 1495 aaKnown RBP48.11■■■■■ 5.29
CPSF4-207ENST00000451876 DCAF8L2P0C7V8 631 aa47.8■■■■■ 5.24
CPSF4-207ENST00000451876 NACADO15069 1562 aa47.7■■■■■ 5.23
CPSF4-207ENST00000451876 RB1CC1Q8TDY2 1594 aa47.64■■■■■ 5.22
CPSF4-207ENST00000451876 DCAF1Q9Y4B6 1507 aa47.62■■■■■ 5.21
CPSF4-207ENST00000451876 MYO15BQ96JP2 1530 aa47.59■■■■■ 5.21
CPSF4-207ENST00000451876 UNC13AQ9UPW8 1703 aa46.75■■■■■ 5.07
CPSF4-207ENST00000451876 SCRIBQ14160 1630 aa46.6■■■■■ 5.05
CPSF4-207ENST00000451876 BICRAQ9NZM4 1560 aa46.26■■■■■ 5
CPSF4-207ENST00000451876 PABPN1Q86U42 306 aaKnown RBP eCLIP46.12■■■■■ 4.97
CPSF4-207ENST00000451876 SHROOM4Q9ULL8 1493 aa45.88■■■■■ 4.94
CPSF4-207ENST00000451876 EIF4G1Q04637 1599 aaKnown RBP44.96■■■■■ 4.79
CPSF4-207ENST00000451876 CECR2Q9BXF3 1484 aa44.83■■■■■ 4.77
CPSF4-207ENST00000451876 DNAJC5BQ9UF47 199 aa44.68■■■■■ 4.74
CPSF4-207ENST00000451876 CC2D2AQ9P2K1 1620 aa44.64■■■■■ 4.74
CPSF4-207ENST00000451876 SMARCA4P51532 1647 aa44.6■■■■■ 4.73
CPSF4-207ENST00000451876 BAZ1AQ9NRL2 1556 aaPredicted RBP44.58■■■■■ 4.73
CPSF4-207ENST00000451876 MROH2BQ7Z745 1585 aa44.43■■■■■ 4.7
CPSF4-207ENST00000451876 ATAD2BQ9ULI0 1458 aa44.15■■■■■ 4.66
CPSF4-207ENST00000451876 PEG3Q9GZU2 1588 aa44.12■■■■■ 4.65
CPSF4-207ENST00000451876 SMARCA2P51531 1590 aa44.11■■■■■ 4.65
CPSF4-207ENST00000451876 RSF1Q96T23 1441 aaPredicted RBP44.09■■■■■ 4.65
CPSF4-207ENST00000451876 WIZO95785 1651 aa44.03■■■■■ 4.64
CPSF4-207ENST00000451876 NCAPD3P42695 1498 aa44■■■■■ 4.63
CPSF4-207ENST00000451876 HMGXB3Q12766 1538 aa43.89■■■■■ 4.62
CPSF4-207ENST00000451876 BAZ1BQ9UIG0 1483 aaKnown RBP43.82■■■■■ 4.61
CPSF4-207ENST00000451876 TOP2AP11388 1531 aaKnown RBP43.52■■■■■ 4.56
CPSF4-207ENST00000451876 SUPT5HO00267 1087 aaKnown RBP43.4■■■■■ 4.54
CPSF4-207ENST00000451876 CCDC88BA6NC98 1476 aa42.99■■■■■ 4.47
CPSF4-207ENST00000451876 NESP48681 1621 aa42.86■■■■■ 4.45
CPSF4-207ENST00000451876 LAMC3Q9Y6N6 1575 aa42.79■■■■■ 4.44
CPSF4-207ENST00000451876 CADPSQ9ULU8 1353 aa42.74■■■■■ 4.43
CPSF4-207ENST00000451876 CFTRP13569 1480 aa42.65■■■■■ 4.42
CPSF4-207ENST00000451876 PRDM2Q13029 1718 aa42.5■■■■■ 4.39
CPSF4-207ENST00000451876 KIF21AQ7Z4S6 1674 aa42.43■■■■■ 4.38
CPSF4-207ENST00000451876 PDS5BQ9NTI5 1447 aa42.4■■■■■ 4.38
CPSF4-207ENST00000451876 ERCC6Q03468 1493 aa42.38■■■■■ 4.38
CPSF4-207ENST00000451876 FANCD2Q9BXW9 1451 aa42.29■■■■■ 4.36
CPSF4-207ENST00000451876 CEP164Q9UPV0 1460 aa42.19■■■■■ 4.34
CPSF4-207ENST00000451876 THOC2Q8NI27 1593 aaKnown RBP42.11■■■■■ 4.33
CPSF4-207ENST00000451876 MRC2Q9UBG0 1479 aa41.99■■■■■ 4.31
CPSF4-207ENST00000451876 WDR62O43379 1518 aa41.87■■■■■ 4.29
CPSF4-207ENST00000451876 URB2Q14146 1524 aaKnown RBP41.87■■■■■ 4.29
CPSF4-207ENST00000451876 DNMBPQ6XZF7 1577 aa41.71■■■■■ 4.27
CPSF4-207ENST00000451876 TOPBP1Q92547 1522 aa41.7■■■■■ 4.27
CPSF4-207ENST00000451876 ABCC8Q09428 1581 aa41.7■■■■■ 4.27
CPSF4-207ENST00000451876 CUX2O14529 1486 aa41.69■■■■■ 4.26
CPSF4-207ENST00000451876 CUX1P39880 1505 aa41.64■■■■■ 4.26
CPSF4-207ENST00000451876 WRNQ14191 1432 aaPredicted RBP eCLIP41.54■■■■■ 4.245e-6■■■■■ 29.2
CPSF4-207ENST00000451876 SYNJ1O43426 1573 aa41.5■■■■■ 4.23
CPSF4-207ENST00000451876 BIVM-ERCC5R4GMW8 1640 aa41.46■■■■■ 4.23
CPSF4-207ENST00000451876 TOP2BQ02880 1626 aa41.44■■■■■ 4.22
CPSF4-207ENST00000451876 POLA1P09884 1462 aaPredicted RBP41.4■■■■■ 4.22
CPSF4-207ENST00000451876 FGD5Q6ZNL6 1462 aa41.39■■■■■ 4.22
CPSF4-207ENST00000451876 TARBP1Q13395 1621 aaKnown RBP41.25■■■■■ 4.19
CPSF4-207ENST00000451876 IFT140Q96RY7 1462 aa41.24■■■■■ 4.19
CPSF4-207ENST00000451876 RAD54L2Q9Y4B4 1467 aa41.22■■■■■ 4.19
CPSF4-207ENST00000451876 SOGA1O94964 1423 aa41.17■■■■■ 4.18
CPSF4-207ENST00000451876 WDR97A6NE52 1622 aa41.11■■■■■ 4.17
CPSF4-207ENST00000451876 ZNF608Q9ULD9 1512 aaPredicted RBP41.08■■■■■ 4.17
CPSF4-207ENST00000451876 EIF4G3O43432 1585 aaKnown RBP40.99■■■■■ 4.15
CPSF4-207ENST00000451876 ABCA10Q8WWZ4 1543 aa40.99■■■■■ 4.15
CPSF4-207ENST00000451876 TRIM41Q8WV44 630 aa40.91■■■■■ 4.14
CPSF4-207ENST00000451876 AQRO60306 1485 aaKnown RBP eCLIP40.9■■■■■ 4.142e-7■■■■■ 78.1
CPSF4-207ENST00000451876 TDRD9Q8NDG6 1382 aaKnown RBP40.9■■■■■ 4.14
CPSF4-207ENST00000451876 ABCA5Q8WWZ7 1642 aa40.84■■■■■ 4.13
CPSF4-207ENST00000451876 CHIC1Q5VXU3 224 aa40.83■■■■■ 4.13
CPSF4-207ENST00000451876 GAPVD1Q14C86 1478 aa40.74■■■■■ 4.11
CPSF4-207ENST00000451876 PBRM1Q86U86 1689 aa40.73■■■■■ 4.11
CPSF4-207ENST00000451876 GRIN2BQ13224 1484 aa40.63■■■■■ 4.09
CPSF4-207ENST00000451876 KIF27Q86VH2 1401 aa40.58■■■■■ 4.09
CPSF4-207ENST00000451876 SNAPC4Q5SXM2 1469 aa40.54■■■■■ 4.08
CPSF4-207ENST00000451876 RUSC2Q8N2Y8 1516 aa40.52■■■■■ 4.08
CPSF4-207ENST00000451876 ERICH3Q5RHP9 1530 aa40.5■■■■■ 4.07
CPSF4-207ENST00000451876 MAGI1Q96QZ7 1491 aaPredicted RBP40.47■■■■■ 4.07
CPSF4-207ENST00000451876 ADAMTS12P58397 1594 aa40.4■■■■■ 4.06
CPSF4-207ENST00000451876 CHD1O14646 1710 aa40.4■■■■■ 4.06
CPSF4-207ENST00000451876 IGF1RP08069 1367 aa40.35■■■■■ 4.05
CPSF4-207ENST00000451876 SYNJ2O15056 1496 aa40.31■■■■■ 4.04
CPSF4-207ENST00000451876 CUL7Q14999 1698 aa40.29■■■■■ 4.04
CPSF4-207ENST00000451876 FHAD1B1AJZ9 1412 aa40.25■■■■■ 4.03
CPSF4-207ENST00000451876 FBLN2P98095 1184 aa40.24■■■■■ 4.03
CPSF4-207ENST00000451876 CHMP7Q8WUX9 453 aaPredicted RBP40.18■■■■■ 4.02
CPSF4-207ENST00000451876 EEA1Q15075 1411 aa40.18■■■■■ 4.02
CPSF4-207ENST00000451876 GRIN2AQ12879 1464 aa40.15■■■■■ 4.02
CPSF4-207ENST00000451876 CARMIL1Q5VZK9 1371 aa40.12■■■■■ 4.01
CPSF4-207ENST00000451876 FAM9AQ8IZU1 332 aaPredicted RBP40.11■■■■■ 4.01
CPSF4-207ENST00000451876 CSRNP3Q8WYN3 585 aa40.04■■■■■ 4
CPSF4-207ENST00000451876 OSCARQ8IYS5 282 aa40.02■■■■■ 4
CPSF4-207ENST00000451876 PRXQ9BXM0 1461 aa40■■■■□ 3.99
CPSF4-207ENST00000451876 CEP170Q5SW79 1584 aa39.98■■■■□ 3.99
CPSF4-207ENST00000451876 RAPGEF2Q9Y4G8 1499 aa39.97■■■■□ 3.99
CPSF4-207ENST00000451876 NUP160Q12769 1436 aa39.93■■■■□ 3.98
CPSF4-207ENST00000451876 CLASP1Q7Z460 1538 aa39.89■■■■□ 3.98
CPSF4-207ENST00000451876 KIF21BO75037 1637 aa39.82■■■■□ 3.97
CPSF4-207ENST00000451876 CTTNBP2Q8WZ74 1663 aa39.7■■■■□ 3.95
CPSF4-207ENST00000451876 DNAJC5Q9H3Z4 198 aa39.68■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms