Protein–RNA interactions for Protein: O15371

EIF3D, Eukaryotic translation initiation factor 3 subunit D, humanhuman

Known RBP eCLIP

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3DO15371 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.17□□□□□ -2.222e-6■■□□□ 12.3
EIF3DO15371 ANKHD1-EIF4EBP3-201ENST00000437495 2243 ntTSL 59.35□□□□□ -0.914e-6■■□□□ 12.3
EIF3DO15371 ANKHD1-EIF4EBP3-202ENST00000474060 5446 ntTSL 26.24□□□□□ -1.414e-6■■□□□ 12.3
EIF3DO15371 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC8.44□□□□□ -1.062e-6■■□□□ 12.3
EIF3DO15371 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC8.07□□□□□ -1.122e-6■■□□□ 12.3
EIF3DO15371 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.182e-6■■□□□ 12.3
EIF3DO15371 YWHAQ-203ENST00000446619 665 ntTSL 322.83■■□□□ 1.256e-10■■□□□ 12.3
EIF3DO15371 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.16e-10■■□□□ 12.3
EIF3DO15371 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.329e-7■■□□□ 12.2
EIF3DO15371 MKI67-204ENST00000478293 654 ntTSL 514.29□□□□□ -0.126e-7■■□□□ 12.2
EIF3DO15371 MKI67-202ENST00000368654 12678 ntAPPRIS P3 TSL 2 BASIC9.42□□□□□ -0.96e-7■■□□□ 12.2
EIF3DO15371 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.386e-7■■□□□ 12.2
EIF3DO15371 VPS13A-204ENST00000376634 10269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.33e-6■■□□□ 12.2
EIF3DO15371 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.373e-6■■□□□ 12.2
EIF3DO15371 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.83e-6■■□□□ 12.2
EIF3DO15371 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.42□□□□□ -1.223e-6■■□□□ 12.2
EIF3DO15371 VPS13A-207ENST00000419472 2781 ntTSL 1 (best)5.08□□□□□ -1.63e-6■■□□□ 12.2
EIF3DO15371 KTN1-212ENST00000554294 564 ntTSL 54.96□□□□□ -1.626e-9■■□□□ 12.2
EIF3DO15371 KTN1-224ENST00000556631 5299 ntTSL 1 (best)1.92□□□□□ -2.16e-9■■□□□ 12.2
EIF3DO15371 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.213e-7■■□□□ 12.2
EIF3DO15371 ACACA-228ENST00000613146 3974 ntTSL 1 (best)8.24□□□□□ -1.092e-6■■□□□ 12.2
EIF3DO15371 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.13■□□□□ 0.972e-6■■□□□ 12.2
EIF3DO15371 MT1X-204ENST00000568370 1727 nt17.8■□□□□ 0.445e-6■■□□□ 12.2
EIF3DO15371 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC13.98□□□□□ -0.175e-6■■□□□ 12.2
EIF3DO15371 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC13.98□□□□□ -0.175e-6■■□□□ 12.2
EIF3DO15371 LINC00511-202ENST00000457958 1696 ntTSL 1 (best) BASIC13.91□□□□□ -0.182e-6■■□□□ 12.2
EIF3DO15371 LINC00511-214ENST00000581801 379 ntTSL 311.86□□□□□ -0.512e-6■■□□□ 12.2
EIF3DO15371 LINC00511-210ENST00000580861 467 ntTSL 49.74□□□□□ -0.852e-6■■□□□ 12.2
EIF3DO15371 MT1X-201ENST00000394485 450 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.895e-6■■□□□ 12.2
EIF3DO15371 MT1X-203ENST00000564974 549 ntTSL 1 (best)9.44□□□□□ -0.95e-6■■□□□ 12.2
EIF3DO15371 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.575e-6■■□□□ 12.1
EIF3DO15371 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.439e-12■■□□□ 12.1
EIF3DO15371 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.339e-12■■□□□ 12.1
EIF3DO15371 EIF4G1-226ENST00000450424 2658 ntTSL 519.41■□□□□ 0.73e-8■■□□□ 12.1
EIF3DO15371 EIF4G1-208ENST00000413967 2808 ntTSL 218.69■□□□□ 0.583e-8■■□□□ 12.1
EIF3DO15371 EIF4G1-210ENST00000421110 2755 ntTSL 518.18■□□□□ 0.53e-8■■□□□ 12.1
EIF3DO15371 EIF4G1-213ENST00000426123 2907 ntTSL 216.18■□□□□ 0.183e-8■■□□□ 12.1
EIF3DO15371 CNOT7-210ENST00000523649 699 ntTSL 217.45■□□□□ 0.381e-8■■□□□ 12.1
EIF3DO15371 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.27■□□□□ 0.041e-8■■□□□ 12.1
EIF3DO15371 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC15.22■□□□□ 0.031e-8■■□□□ 12.1
EIF3DO15371 CNOT7-202ENST00000518021 768 ntTSL 514.84□□□□□ -0.031e-8■■□□□ 12.1
EIF3DO15371 CNOT7-206ENST00000519954 1209 ntTSL 314.84□□□□□ -0.031e-8■■□□□ 12.1
EIF3DO15371 PKD1-212ENST00000475889 511 ntTSL 514.24□□□□□ -0.133e-7■■□□□ 12.1
EIF3DO15371 C14orf119-201ENST00000319074 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.491e-8■■□□□ 12.1
EIF3DO15371 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.071e-8■■□□□ 12.1
EIF3DO15371 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.21e-8■■□□□ 12.1
EIF3DO15371 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.532e-7■■□□□ 12.1
EIF3DO15371 GSE1-204ENST00000411612 872 ntTSL 523.67■■□□□ 1.381e-6■■□□□ 12
EIF3DO15371 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.081e-6■■□□□ 12
EIF3DO15371 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.21e-6■■□□□ 12
EIF3DO15371 GSE1-215ENST00000635906 666 ntTSL 313.6□□□□□ -0.231e-6■■□□□ 12
EIF3DO15371 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.291e-6■■□□□ 12
EIF3DO15371 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.488e-8■■□□□ 12
EIF3DO15371 SNRPF-203ENST00000551316 787 ntTSL 213.64□□□□□ -0.238e-8■■□□□ 12
EIF3DO15371 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC12.7□□□□□ -0.388e-8■■□□□ 12
EIF3DO15371 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC12.05□□□□□ -0.488e-8■■□□□ 12
EIF3DO15371 LIN54-208ENST00000509748 729 ntTSL 522.9■■□□□ 1.263e-6■■□□□ 11.9
EIF3DO15371 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.77■□□□□ 0.923e-6■■□□□ 11.9
EIF3DO15371 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.543e-6■■□□□ 11.9
EIF3DO15371 TTC17-202ENST00000299240 3648 ntTSL 1 (best) BASIC13.64□□□□□ -0.233e-6■■□□□ 11.9
EIF3DO15371 DLG5-206ENST00000468332 5505 ntTSL 213.11□□□□□ -0.313e-6■■□□□ 11.9
EIF3DO15371 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.343e-6■■□□□ 11.9
EIF3DO15371 DLG5-207ENST00000475613 7246 ntTSL 512.74□□□□□ -0.373e-6■■□□□ 11.9
EIF3DO15371 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.393e-6■■□□□ 11.9
EIF3DO15371 DLG5-201ENST00000372391 7415 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.533e-6■■□□□ 11.9
EIF3DO15371 TTC17-201ENST00000039989 4469 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.543e-6■■□□□ 11.9
EIF3DO15371 SUPT6H-204ENST00000577939 583 ntTSL 311.01□□□□□ -0.651e-8■■□□□ 11.9
EIF3DO15371 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC10.08□□□□□ -0.83e-6■■□□□ 11.9
EIF3DO15371 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.843e-6■■□□□ 11.9
EIF3DO15371 CHD6-201ENST00000309279 1635 ntTSL 1 (best) BASIC8.91□□□□□ -0.983e-6■■□□□ 11.9
EIF3DO15371 CHD6-205ENST00000440697 1635 ntTSL 58.91□□□□□ -0.983e-6■■□□□ 11.9
EIF3DO15371 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.8□□□□□ -1.163e-6■■□□□ 11.9
EIF3DO15371 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.23e-6■■□□□ 11.9
EIF3DO15371 BTAF1-203ENST00000476401 522 ntTSL 37.16□□□□□ -1.263e-6■■□□□ 11.9
EIF3DO15371 SCN1A-212ENST00000636194 8508 ntTSL 56.92□□□□□ -1.33e-6■■□□□ 11.9
EIF3DO15371 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.88□□□□□ -1.313e-6■■□□□ 11.9
EIF3DO15371 SCN1A-213ENST00000636759 3606 ntTSL 56.86□□□□□ -1.313e-6■■□□□ 11.9
EIF3DO15371 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.323e-6■■□□□ 11.9
EIF3DO15371 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.76□□□□□ -1.333e-6■■□□□ 11.9
EIF3DO15371 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.433e-6■■□□□ 11.9
EIF3DO15371 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.433e-6■■□□□ 11.9
EIF3DO15371 TTC17-208ENST00000526774 3360 ntTSL 1 (best)5.95□□□□□ -1.463e-6■■□□□ 11.9
EIF3DO15371 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.493e-6■■□□□ 11.9
EIF3DO15371 SCN1A-216ENST00000637968 4614 ntTSL 55.59□□□□□ -1.513e-6■■□□□ 11.9
EIF3DO15371 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.523e-6■■□□□ 11.9
EIF3DO15371 SCN1A-220ENST00000641603 12506 ntBASIC5.17□□□□□ -1.583e-6■■□□□ 11.9
EIF3DO15371 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.02□□□□□ -1.613e-6■■□□□ 11.9
EIF3DO15371 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.623e-6■■□□□ 11.9
EIF3DO15371 SCN1A-221ENST00000641996 12903 nt3.67□□□□□ -1.823e-6■■□□□ 11.9
EIF3DO15371 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.53□□□□□ -1.843e-6■■□□□ 11.9
EIF3DO15371 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.96■■□□□ 1.435e-6■■□□□ 11.9
EIF3DO15371 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC23.89■■□□□ 1.425e-6■■□□□ 11.9
EIF3DO15371 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.81■■□□□ 1.45e-6■■□□□ 11.9
EIF3DO15371 ANKHD1-220ENST00000511151 1216 ntTSL 323.42■■□□□ 1.345e-6■■□□□ 11.9
EIF3DO15371 ANKHD1-207ENST00000421134 4814 ntTSL 519.43■□□□□ 0.75e-6■■□□□ 11.9
EIF3DO15371 HNRNPD-205ENST00000507010 748 ntTSL 326.78■■□□□ 1.882e-13■■□□□ 11.9
EIF3DO15371 HNRNPD-209ENST00000513584 1240 ntTSL 225.92■■□□□ 1.742e-13■■□□□ 11.9
EIF3DO15371 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.9■■□□□ 1.742e-13■■□□□ 11.9
EIF3DO15371 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.85■■□□□ 1.572e-13■■□□□ 11.9
EIF3DO15371 HNRNPD-204ENST00000503822 607 ntTSL 523.95■■□□□ 1.422e-13■■□□□ 11.9
Retrieved 100 of 4,069 protein–RNA pairs in 49.2 ms