RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 NISCHQ9Y2I1 1504 aa13.56□□□□□ -0.24
SCN1A-213ENST00000636759 PELP1Q8IZL8 1130 aaKnown RBP12.01□□□□□ -0.49
SCN1A-213ENST00000636759 CCDC180Q9P1Z9 1646 aa11.79□□□□□ -0.52
SCN1A-213ENST00000636759 MYT1Q01538 1121 aa11.75□□□□□ -0.53
SCN1A-213ENST00000636759 HRCP23327 699 aa11.5□□□□□ -0.57
SCN1A-213ENST00000636759 ZCCHC6Q5VYS8 1495 aaKnown RBP11.46□□□□□ -0.57
SCN1A-213ENST00000636759 DCAF1Q9Y4B6 1507 aa11.27□□□□□ -0.61
SCN1A-213ENST00000636759 PPARGC1BQ86YN6 1023 aaKnown RBP11.18□□□□□ -0.62
SCN1A-213ENST00000636759 TTBK1Q5TCY1 1321 aaPredicted RBP11.15□□□□□ -0.62
SCN1A-213ENST00000636759 SHROOM4Q9ULL8 1493 aa11.12□□□□□ -0.63
SCN1A-213ENST00000636759 SCAF1Q9H7N4 1312 aaKnown RBP11.1□□□□□ -0.63
SCN1A-213ENST00000636759 MYO15BQ96JP2 1530 aa11.08□□□□□ -0.64
SCN1A-213ENST00000636759 PCGF6Q9BYE7 350 aa11.06□□□□□ -0.64
SCN1A-213ENST00000636759 NACADO15069 1562 aa10.87□□□□□ -0.67
SCN1A-213ENST00000636759 DCAF8L2P0C7V8 631 aa10.86□□□□□ -0.67
SCN1A-213ENST00000636759 CHIC1Q5VXU3 224 aa10.85□□□□□ -0.67
SCN1A-213ENST00000636759 SUPT5HO00267 1087 aaKnown RBP10.84□□□□□ -0.67
SCN1A-213ENST00000636759 ABCC9O60706 1549 aa10.84□□□□□ -0.67
SCN1A-213ENST00000636759 SCRIBQ14160 1630 aa10.78□□□□□ -0.68
SCN1A-213ENST00000636759 CENPBP07199 599 aaPredicted RBP10.76□□□□□ -0.69
SCN1A-213ENST00000636759 BCL11AQ9H165 835 aa10.76□□□□□ -0.69
SCN1A-213ENST00000636759 ACIN1Q9UKV3 1341 aaKnown RBP10.76□□□□□ -0.69
SCN1A-213ENST00000636759 ZEB1P37275 1124 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-213ENST00000636759 GTF3C3Q9Y5Q9 886 aa10.71□□□□□ -0.69
SCN1A-213ENST00000636759 RB1CC1Q8TDY2 1594 aa10.69□□□□□ -0.7
SCN1A-213ENST00000636759 PRKCSHP14314 528 aaPredicted RBP10.69□□□□□ -0.7
SCN1A-213ENST00000636759 NEUROD1Q13562 356 aa10.65□□□□□ -0.7
SCN1A-213ENST00000636759 UNC13AQ9UPW8 1703 aa10.63□□□□□ -0.71
SCN1A-213ENST00000636759 ERICH6Q7L0X2 663 aa10.63□□□□□ -0.71
SCN1A-213ENST00000636759 FAM9AQ8IZU1 332 aaPredicted RBP10.59□□□□□ -0.71
SCN1A-213ENST00000636759 RSF1Q96T23 1441 aaPredicted RBP10.58□□□□□ -0.72
SCN1A-213ENST00000636759 TRIM26Q12899 539 aaPredicted RBP10.57□□□□□ -0.72
SCN1A-213ENST00000636759 EIF4G1Q04637 1599 aaKnown RBP10.57□□□□□ -0.72
SCN1A-213ENST00000636759 CECR2Q9BXF3 1484 aa10.5□□□□□ -0.73
SCN1A-213ENST00000636759 MROH2BQ7Z745 1585 aa10.48□□□□□ -0.73
SCN1A-213ENST00000636759 ANP32EQ9BTT0 268 aa10.45□□□□□ -0.74
SCN1A-213ENST00000636759 BICRAQ9NZM4 1560 aa10.45□□□□□ -0.74
SCN1A-213ENST00000636759 LOC105371045A0A1W2PR82 267 aa10.44□□□□□ -0.74
SCN1A-213ENST00000636759 BAZ1AQ9NRL2 1556 aaPredicted RBP10.44□□□□□ -0.74
SCN1A-213ENST00000636759 WIZO95785 1651 aa10.43□□□□□ -0.74
SCN1A-213ENST00000636759 SMARCA4P51532 1647 aa10.4□□□□□ -0.75
SCN1A-213ENST00000636759 APLP2Q06481 763 aa10.36□□□□□ -0.75
SCN1A-213ENST00000636759 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
SCN1A-213ENST00000636759 TOP2AP11388 1531 aaKnown RBP10.32□□□□□ -0.76
SCN1A-213ENST00000636759 PEG3Q9GZU2 1588 aa10.32□□□□□ -0.76
SCN1A-213ENST00000636759 CSRNP3Q8WYN3 585 aa10.3□□□□□ -0.76
SCN1A-213ENST00000636759 YTHDC1Q96MU7 727 aaKnown RBP10.27□□□□□ -0.77
SCN1A-213ENST00000636759 SMARCA2P51531 1590 aa10.24□□□□□ -0.77
SCN1A-213ENST00000636759 CCDC88BA6NC98 1476 aa10.19□□□□□ -0.78
SCN1A-213ENST00000636759 PABPN1Q86U42 306 aaKnown RBP eCLIP10.16□□□□□ -0.78
SCN1A-213ENST00000636759 CCER1Q8TC90 406 aaPredicted RBP10.15□□□□□ -0.79
SCN1A-213ENST00000636759 ATAD2BQ9ULI0 1458 aa10.13□□□□□ -0.79
SCN1A-213ENST00000636759 ABCC8Q09428 1581 aa10.13□□□□□ -0.79
SCN1A-213ENST00000636759 TRIM41Q8WV44 630 aa10.12□□□□□ -0.79
SCN1A-213ENST00000636759 WRNQ14191 1432 aaPredicted RBP eCLIP10.12□□□□□ -0.79
SCN1A-213ENST00000636759 CLSPNQ9HAW4 1339 aa10.11□□□□□ -0.79
SCN1A-213ENST00000636759 TSHZ2Q9NRE2 1034 aa10.11□□□□□ -0.79
SCN1A-213ENST00000636759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-213ENST00000636759 HMGXB3Q12766 1538 aa10.05□□□□□ -0.8
SCN1A-213ENST00000636759 BAZ1BQ9UIG0 1483 aaKnown RBP10.04□□□□□ -0.8
SCN1A-213ENST00000636759 SUPT16HQ9Y5B9 1047 aaKnown RBP10.03□□□□□ -0.8
SCN1A-213ENST00000636759 NCAPD3P42695 1498 aa10.01□□□□□ -0.81
SCN1A-213ENST00000636759 ZNF316A6NFI3 1004 aaPredicted RBP10.01□□□□□ -0.81
SCN1A-213ENST00000636759 ANO8Q9HCE9 1232 aaPredicted RBP10.01□□□□□ -0.81
SCN1A-213ENST00000636759 RUSC2Q8N2Y8 1516 aa10□□□□□ -0.81
SCN1A-213ENST00000636759 KIF21BO75037 1637 aa9.99□□□□□ -0.81
SCN1A-213ENST00000636759 SYNJ1O43426 1573 aa9.99□□□□□ -0.81
SCN1A-213ENST00000636759 SOGA1O94964 1423 aa9.99□□□□□ -0.81
SCN1A-213ENST00000636759 MYT1LQ9UL68 1186 aa9.96□□□□□ -0.81
SCN1A-213ENST00000636759 MIER1Q8N108 512 aa9.96□□□□□ -0.82
SCN1A-213ENST00000636759 CEP162Q5TB80 1403 aa9.96□□□□□ -0.82
SCN1A-213ENST00000636759 TNIKQ9UKE5 1360 aa9.95□□□□□ -0.82
SCN1A-213ENST00000636759 PRDM2Q13029 1718 aa9.94□□□□□ -0.82
SCN1A-213ENST00000636759 SLC24A1O60721 1099 aa9.93□□□□□ -0.82
SCN1A-213ENST00000636759 EEA1Q15075 1411 aa9.93□□□□□ -0.82
SCN1A-213ENST00000636759 BIVM-ERCC5R4GMW8 1640 aa9.92□□□□□ -0.82
SCN1A-213ENST00000636759 EIF5BO60841 1220 aaKnown RBP9.9□□□□□ -0.82
SCN1A-213ENST00000636759 UBE2Q2Q8WVN8 375 aa9.89□□□□□ -0.83
SCN1A-213ENST00000636759 TOP2BQ02880 1626 aa9.89□□□□□ -0.83
SCN1A-213ENST00000636759 RBM19Q9Y4C8 960 aaKnown RBP9.87□□□□□ -0.83
SCN1A-213ENST00000636759 CFTRP13569 1480 aa9.86□□□□□ -0.83
SCN1A-213ENST00000636759 GOLGA3Q08378 1498 aa9.86□□□□□ -0.83
SCN1A-213ENST00000636759 CC2D2AQ9P2K1 1620 aa9.85□□□□□ -0.83
SCN1A-213ENST00000636759 ERICH6BQ5W0A0 696 aa9.85□□□□□ -0.83
SCN1A-213ENST00000636759 DEKP35659 375 aaKnown RBP9.84□□□□□ -0.83
SCN1A-213ENST00000636759 SALL2Q9Y467 1007 aaPredicted RBP9.84□□□□□ -0.83
SCN1A-213ENST00000636759 BCANQ96GW7 911 aa9.83□□□□□ -0.84
SCN1A-213ENST00000636759 CCDC136Q96JN2 1154 aa9.83□□□□□ -0.84
SCN1A-213ENST00000636759 CEP164Q9UPV0 1460 aa9.79□□□□□ -0.84
SCN1A-213ENST00000636759 CUX1P39880 1505 aa9.79□□□□□ -0.84
SCN1A-213ENST00000636759 EHMT2Q96KQ7 1210 aa9.78□□□□□ -0.84
SCN1A-213ENST00000636759 NEFLP07196 543 aa9.77□□□□□ -0.85
SCN1A-213ENST00000636759 ERICH3Q5RHP9 1530 aa9.76□□□□□ -0.85
SCN1A-213ENST00000636759 RAPGEF2Q9Y4G8 1499 aa9.76□□□□□ -0.85
SCN1A-213ENST00000636759 CLIP1P30622 1438 aa9.75□□□□□ -0.85
SCN1A-213ENST00000636759 VPS8Q8N3P4 1428 aa9.74□□□□□ -0.85
SCN1A-213ENST00000636759 MSH5O43196 834 aa9.74□□□□□ -0.85
SCN1A-213ENST00000636759 FKBP8Q14318 412 aa9.73□□□□□ -0.85
SCN1A-213ENST00000636759 PRXQ9BXM0 1461 aa9.73□□□□□ -0.85
SCN1A-213ENST00000636759 ARAP1Q96P48 1450 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms