RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 PELP1Q8IZL8 1130 aaKnown RBP19.38■□□□□ 0.69
VPS13A-205ENST00000376636 DCAF8L2P0C7V8 631 aa18.8■□□□□ 0.6
VPS13A-205ENST00000376636 CCER1Q8TC90 406 aaPredicted RBP18.43■□□□□ 0.54
VPS13A-205ENST00000376636 ERICH6Q7L0X2 663 aa18.42■□□□□ 0.54
VPS13A-205ENST00000376636 MYT1Q01538 1121 aa18.38■□□□□ 0.53
VPS13A-205ENST00000376636 APLP2Q06481 763 aa18.02■□□□□ 0.47
VPS13A-205ENST00000376636 CENPBP07199 599 aaPredicted RBP18.01■□□□□ 0.47
VPS13A-205ENST00000376636 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
VPS13A-205ENST00000376636 FAM9AQ8IZU1 332 aaPredicted RBP17.85■□□□□ 0.45
VPS13A-205ENST00000376636 YTHDC1Q96MU7 727 aaKnown RBP17.8■□□□□ 0.44
VPS13A-205ENST00000376636 NEFLP07196 543 aa17.72■□□□□ 0.43
VPS13A-205ENST00000376636 EHMT2Q96KQ7 1210 aa17.63■□□□□ 0.41
VPS13A-205ENST00000376636 ZEB1P37275 1124 aaPredicted RBP17.61■□□□□ 0.41
VPS13A-205ENST00000376636 DAXXQ9UER7 740 aaPredicted RBP17.55■□□□□ 0.4
VPS13A-205ENST00000376636 TTBK1Q5TCY1 1321 aaPredicted RBP17.38■□□□□ 0.37
VPS13A-205ENST00000376636 PCGF6Q9BYE7 350 aa17.37■□□□□ 0.37
VPS13A-205ENST00000376636 SHROOM4Q9ULL8 1493 aa17.31■□□□□ 0.36
VPS13A-205ENST00000376636 RTL5Q5HYW3 569 aaPredicted RBP17.1■□□□□ 0.33
VPS13A-205ENST00000376636 ZNF316A6NFI3 1004 aaPredicted RBP17.06■□□□□ 0.32
VPS13A-205ENST00000376636 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.31
VPS13A-205ENST00000376636 RANGAP1P46060 587 aaPredicted RBP16.86■□□□□ 0.29
VPS13A-205ENST00000376636 NISCHQ9Y2I1 1504 aa16.8■□□□□ 0.28
VPS13A-205ENST00000376636 CLSPNQ9HAW4 1339 aa16.79■□□□□ 0.28
VPS13A-205ENST00000376636 UBTFP17480 764 aaKnown RBP16.74■□□□□ 0.27
VPS13A-205ENST00000376636 TRIM41Q8WV44 630 aa16.74■□□□□ 0.27
VPS13A-205ENST00000376636 POLR3GLQ9BT43 218 aa16.6■□□□□ 0.25
VPS13A-205ENST00000376636 GLIPR1L2Q4G1C9 344 aa16.55■□□□□ 0.24
VPS13A-205ENST00000376636 TRIM26Q12899 539 aaPredicted RBP16.53■□□□□ 0.24
VPS13A-205ENST00000376636 ZBTB47Q9UFB7 747 aaPredicted RBP16.49■□□□□ 0.23
VPS13A-205ENST00000376636 MYT1LQ9UL68 1186 aa16.48■□□□□ 0.23
VPS13A-205ENST00000376636 HRCP23327 699 aa16.47■□□□□ 0.23
VPS13A-205ENST00000376636 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
VPS13A-205ENST00000376636 ANP32BQ92688 251 aaKnown RBP16.41■□□□□ 0.22
VPS13A-205ENST00000376636 CDK11AQ9UQ88 783 aaPredicted RBP16.38■□□□□ 0.21
VPS13A-205ENST00000376636 CNGB1Q14028 1251 aaPredicted RBP16.3■□□□□ 0.2
VPS13A-205ENST00000376636 EIF5BO60841 1220 aaKnown RBP16.27■□□□□ 0.2
VPS13A-205ENST00000376636 DIEXFQ68CQ4 756 aaKnown RBP16.27■□□□□ 0.2
VPS13A-205ENST00000376636 ITGAEP38570 1179 aa16.27■□□□□ 0.19
VPS13A-205ENST00000376636 ANP32AP39687 249 aaKnown RBP16.27■□□□□ 0.19
VPS13A-205ENST00000376636 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
VPS13A-205ENST00000376636 HNRNPUL2Q1KMD3 747 aaKnown RBP16.26■□□□□ 0.19
VPS13A-205ENST00000376636 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
VPS13A-205ENST00000376636 CANXP27824 592 aaKnown RBP16.18■□□□□ 0.18
VPS13A-205ENST00000376636 CHIC1Q5VXU3 224 aa16.16■□□□□ 0.18
VPS13A-205ENST00000376636 NEFMP07197 916 aa16.1■□□□□ 0.17
VPS13A-205ENST00000376636 HSP90AA1P07900 732 aaKnown RBP16.09■□□□□ 0.17
VPS13A-205ENST00000376636 ANP32CO43423 234 aa16.08■□□□□ 0.16
VPS13A-205ENST00000376636 BCANQ96GW7 911 aa16.04■□□□□ 0.16
VPS13A-205ENST00000376636 UPF2Q9HAU5 1272 aaKnown RBP16.03■□□□□ 0.16
VPS13A-205ENST00000376636 GTF3C3Q9Y5Q9 886 aa16.03■□□□□ 0.16
VPS13A-205ENST00000376636 SLC24A1O60721 1099 aa16.02■□□□□ 0.15
VPS13A-205ENST00000376636 CDK11BP21127 795 aaKnown RBP15.96■□□□□ 0.15
VPS13A-205ENST00000376636 BCL11AQ9H165 835 aa15.94■□□□□ 0.14
VPS13A-205ENST00000376636 TNNT2P45379 298 aaPredicted RBP15.92■□□□□ 0.14
VPS13A-205ENST00000376636 NPM2Q86SE8 214 aaKnown RBP15.87■□□□□ 0.13
VPS13A-205ENST00000376636 TRIM52Q96A61 297 aa15.86■□□□□ 0.13
VPS13A-205ENST00000376636 FAM50AQ14320 339 aaKnown RBP15.85■□□□□ 0.13
VPS13A-205ENST00000376636 NEUROD1Q13562 356 aa15.78■□□□□ 0.12
VPS13A-205ENST00000376636 ZNF326Q5BKZ1 582 aaKnown RBP15.76■□□□□ 0.11
VPS13A-205ENST00000376636 ANP32EQ9BTT0 268 aa15.71■□□□□ 0.1
VPS13A-205ENST00000376636 TRIM44Q96DX7 344 aaPredicted RBP15.7■□□□□ 0.1
VPS13A-205ENST00000376636 ACIN1Q9UKV3 1341 aaKnown RBP15.66■□□□□ 0.1
VPS13A-205ENST00000376636 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.65■□□□□ 0.1
VPS13A-205ENST00000376636 NBR1Q14596 966 aa15.65■□□□□ 0.1
VPS13A-205ENST00000376636 ARXQ96QS3 562 aa15.61■□□□□ 0.09
VPS13A-205ENST00000376636 LOC105371045A0A1W2PR82 267 aa15.59■□□□□ 0.09
VPS13A-205ENST00000376636 NCLP19338 710 aaKnown RBP15.59■□□□□ 0.09
VPS13A-205ENST00000376636 GOLGA6L22H0YM25 854 aa15.57■□□□□ 0.08
VPS13A-205ENST00000376636 BECN1Q14457 450 aa15.56■□□□□ 0.08
VPS13A-205ENST00000376636 ZRSR1Q15695 479 aaKnown RBP15.55■□□□□ 0.08
VPS13A-205ENST00000376636 MYH16Q9H6N6 1097 aa15.55■□□□□ 0.08
VPS13A-205ENST00000376636 FKBP8Q14318 412 aa15.54■□□□□ 0.08
VPS13A-205ENST00000376636 DDRGK1Q96HY6 314 aa15.52■□□□□ 0.07
VPS13A-205ENST00000376636 CCDC136Q96JN2 1154 aa15.52■□□□□ 0.07
VPS13A-205ENST00000376636 DNTTIP2Q5QJE6 756 aaKnown RBP15.49■□□□□ 0.07
VPS13A-205ENST00000376636 ERICH6BQ5W0A0 696 aa15.47■□□□□ 0.07
VPS13A-205ENST00000376636 PTMAP06454 111 aaKnown RBP15.47■□□□□ 0.07
VPS13A-205ENST00000376636 GOLGA6L6A8MZA4 724 aa15.45■□□□□ 0.06
VPS13A-205ENST00000376636 HNRNPUQ00839 825 aaKnown RBP eCLIP15.43■□□□□ 0.06
VPS13A-205ENST00000376636 TONSLQ96HA7 1378 aa15.37■□□□□ 0.05
VPS13A-205ENST00000376636 NRDCO43847 1150 aa15.37■□□□□ 0.05
VPS13A-205ENST00000376636 CASC1Q6TDU7 716 aa15.37■□□□□ 0.05
VPS13A-205ENST00000376636 CHAF1AQ13111 956 aaPredicted RBP15.36■□□□□ 0.05
VPS13A-205ENST00000376636 NAP1L5Q96NT1 182 aaPredicted RBP15.36■□□□□ 0.05
VPS13A-205ENST00000376636 ESF1Q9H501 851 aaKnown RBP15.35■□□□□ 0.05
VPS13A-205ENST00000376636 WDR43Q15061 677 aaKnown RBP eCLIP15.34■□□□□ 0.05
VPS13A-205ENST00000376636 TMC1Q8TDI8 760 aa15.33■□□□□ 0.04
VPS13A-205ENST00000376636 FAM9BQ8IZU0 186 aa15.3■□□□□ 0.04
VPS13A-205ENST00000376636 L1TD1Q5T7N2 865 aaKnown RBP15.29■□□□□ 0.04
VPS13A-205ENST00000376636 STAG3Q9UJ98 1225 aa15.27■□□□□ 0.03
VPS13A-205ENST00000376636 PPM1GO15355 546 aaPredicted RBP15.23■□□□□ 0.03
VPS13A-205ENST00000376636 SALL2Q9Y467 1007 aaPredicted RBP15.18■□□□□ 0.02
VPS13A-205ENST00000376636 MSNP26038 577 aaKnown RBP15.18■□□□□ 0.02
VPS13A-205ENST00000376636 FBLN2P98095 1184 aa15.13■□□□□ 0.01
VPS13A-205ENST00000376636 TULP1O00294 542 aaPredicted RBP15.13■□□□□ 0.01
VPS13A-205ENST00000376636 MRS2Q9HD23 443 aa15.13■□□□□ 0.01
VPS13A-205ENST00000376636 ZNF777Q9ULD5 760 aaPredicted RBP15.12■□□□□ 0.01
VPS13A-205ENST00000376636 PLCB2Q00722 1185 aa15.11■□□□□ 0.01
VPS13A-205ENST00000376636 TNNT3P45378 269 aaPredicted RBP15.1■□□□□ 0.01
VPS13A-205ENST00000376636 KIAA2012Q0VF49 1180 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms