RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 DCAF8L2P0C7V8 631 aa10.67□□□□□ -0.7
SCN1A-217ENST00000637988 FAM9AQ8IZU1 332 aaPredicted RBP10.12□□□□□ -0.79
SCN1A-217ENST00000637988 APLP2Q06481 763 aa9.76□□□□□ -0.85
SCN1A-217ENST00000637988 PELP1Q8IZL8 1130 aaKnown RBP9.73□□□□□ -0.85
SCN1A-217ENST00000637988 SUPT5HO00267 1087 aaKnown RBP9.63□□□□□ -0.87
SCN1A-217ENST00000637988 NISCHQ9Y2I1 1504 aa9.63□□□□□ -0.87
SCN1A-217ENST00000637988 EHMT2Q96KQ7 1210 aa9.51□□□□□ -0.89
SCN1A-217ENST00000637988 SHROOM4Q9ULL8 1493 aa9.43□□□□□ -0.9
SCN1A-217ENST00000637988 ATP1B4Q9UN42 357 aaPredicted RBP9.42□□□□□ -0.9
SCN1A-217ENST00000637988 MYT1LQ9UL68 1186 aa9.37□□□□□ -0.91
SCN1A-217ENST00000637988 CCER1Q8TC90 406 aaPredicted RBP9.32□□□□□ -0.92
SCN1A-217ENST00000637988 RANGAP1P46060 587 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-217ENST00000637988 ERICH6Q7L0X2 663 aa9.24□□□□□ -0.93
SCN1A-217ENST00000637988 TTBK1Q5TCY1 1321 aaPredicted RBP9.17□□□□□ -0.94
SCN1A-217ENST00000637988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.15□□□□□ -0.94
SCN1A-217ENST00000637988 HNRNPUL2Q1KMD3 747 aaKnown RBP9.15□□□□□ -0.94
SCN1A-217ENST00000637988 UBTFP17480 764 aaKnown RBP9.11□□□□□ -0.95
SCN1A-217ENST00000637988 CHIC1Q5VXU3 224 aa9.1□□□□□ -0.95
SCN1A-217ENST00000637988 NEFLP07196 543 aa9.04□□□□□ -0.96
SCN1A-217ENST00000637988 SLC4A1APQ9BWU0 796 aaKnown RBP9.04□□□□□ -0.96
SCN1A-217ENST00000637988 TRIM41Q8WV44 630 aa9.03□□□□□ -0.96
SCN1A-217ENST00000637988 DAXXQ9UER7 740 aaPredicted RBP9.01□□□□□ -0.97
SCN1A-217ENST00000637988 PCGF6Q9BYE7 350 aa8.98□□□□□ -0.97
SCN1A-217ENST00000637988 CENPBP07199 599 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-217ENST00000637988 POLR3GLQ9BT43 218 aa8.93□□□□□ -0.98
SCN1A-217ENST00000637988 ZEB1P37275 1124 aaPredicted RBP8.92□□□□□ -0.98
SCN1A-217ENST00000637988 BCANQ96GW7 911 aa8.88□□□□□ -0.99
SCN1A-217ENST00000637988 YTHDC1Q96MU7 727 aaKnown RBP8.84□□□□□ -0.99
SCN1A-217ENST00000637988 ESF1Q9H501 851 aaKnown RBP8.83□□□□□ -1
SCN1A-217ENST00000637988 SLC24A1O60721 1099 aa8.82□□□□□ -1
SCN1A-217ENST00000637988 ZBTB47Q9UFB7 747 aaPredicted RBP8.81□□□□□ -1
SCN1A-217ENST00000637988 ITGAEP38570 1179 aa8.78□□□□□ -1
SCN1A-217ENST00000637988 FBLN2P98095 1184 aa8.76□□□□□ -1.01
SCN1A-217ENST00000637988 CLSPNQ9HAW4 1339 aa8.76□□□□□ -1.01
SCN1A-217ENST00000637988 NEFMP07197 916 aa8.76□□□□□ -1.01
SCN1A-217ENST00000637988 ZNF316A6NFI3 1004 aaPredicted RBP8.72□□□□□ -1.01
SCN1A-217ENST00000637988 CNGB1Q14028 1251 aaPredicted RBP8.69□□□□□ -1.02
SCN1A-217ENST00000637988 NPM1P06748 294 aaKnown RBP eCLIP8.67□□□□□ -1.02
SCN1A-217ENST00000637988 STAG3Q9UJ98 1225 aa8.65□□□□□ -1.02
SCN1A-217ENST00000637988 TRIM52Q96A61 297 aa8.64□□□□□ -1.03
SCN1A-217ENST00000637988 PLPPR3Q6T4P5 718 aa8.63□□□□□ -1.03
SCN1A-217ENST00000637988 FAM50AQ14320 339 aaKnown RBP8.61□□□□□ -1.03
SCN1A-217ENST00000637988 ABCC9O60706 1549 aa8.59□□□□□ -1.03
SCN1A-217ENST00000637988 MYT1Q01538 1121 aa8.58□□□□□ -1.04
SCN1A-217ENST00000637988 CANXP27824 592 aaKnown RBP8.57□□□□□ -1.04
SCN1A-217ENST00000637988 SCAF1Q9H7N4 1312 aaKnown RBP8.55□□□□□ -1.04
SCN1A-217ENST00000637988 PPARGC1BQ86YN6 1023 aaKnown RBP8.55□□□□□ -1.04
SCN1A-217ENST00000637988 PABPN1Q86U42 306 aaKnown RBP eCLIP8.54□□□□□ -1.04
SCN1A-217ENST00000637988 NPM2Q86SE8 214 aaKnown RBP8.53□□□□□ -1.04
SCN1A-217ENST00000637988 CDK11AQ9UQ88 783 aaPredicted RBP8.52□□□□□ -1.04
SCN1A-217ENST00000637988 A0A0G2JS52 829 aa8.52□□□□□ -1.05
SCN1A-217ENST00000637988 ZNF326Q5BKZ1 582 aaKnown RBP8.52□□□□□ -1.05
SCN1A-217ENST00000637988 RTL5Q5HYW3 569 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-217ENST00000637988 BCL11AQ9H165 835 aa8.5□□□□□ -1.05
SCN1A-217ENST00000637988 CDK11BP21127 795 aaKnown RBP8.47□□□□□ -1.05
SCN1A-217ENST00000637988 HAP1P54257 671 aaPredicted RBP8.45□□□□□ -1.06
SCN1A-217ENST00000637988 CHGAP10645 457 aaKnown RBP8.45□□□□□ -1.06
SCN1A-217ENST00000637988 C14orf37Q86TY3 774 aa8.44□□□□□ -1.06
SCN1A-217ENST00000637988 TRIM26Q12899 539 aaPredicted RBP8.44□□□□□ -1.06
SCN1A-217ENST00000637988 ZNF777Q9ULD5 760 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-217ENST00000637988 NEUROD1Q13562 356 aa8.41□□□□□ -1.06
SCN1A-217ENST00000637988 ARID4BQ4LE39 1312 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-217ENST00000637988 ANP32CO43423 234 aa8.37□□□□□ -1.07
SCN1A-217ENST00000637988 ARID3CA6NKF2 412 aa8.36□□□□□ -1.07
SCN1A-217ENST00000637988 NPHP1O15259 732 aa8.36□□□□□ -1.07
SCN1A-217ENST00000637988 PPP1R15AO75807 674 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-217ENST00000637988 ANP32BQ92688 251 aaKnown RBP8.35□□□□□ -1.07
SCN1A-217ENST00000637988 HSP90AA1P07900 732 aaKnown RBP8.34□□□□□ -1.07
SCN1A-217ENST00000637988 ZBTB7CA1YPR0 619 aa8.33□□□□□ -1.08
SCN1A-217ENST00000637988 TRHP20396 242 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-217ENST00000637988 CHMP7Q8WUX9 453 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-217ENST00000637988 UPF2Q9HAU5 1272 aaKnown RBP8.29□□□□□ -1.08
SCN1A-217ENST00000637988 P3H3Q8IVL6 736 aa8.28□□□□□ -1.08
SCN1A-217ENST00000637988 MYH16Q9H6N6 1097 aa8.27□□□□□ -1.09
SCN1A-217ENST00000637988 ARXQ96QS3 562 aa8.26□□□□□ -1.09
SCN1A-217ENST00000637988 PLEKHG5O94827 1062 aa8.26□□□□□ -1.09
SCN1A-217ENST00000637988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.26□□□□□ -1.091e-6■■■□□ 16.7
SCN1A-217ENST00000637988 ERCC6Q03468 1493 aa8.26□□□□□ -1.09
SCN1A-217ENST00000637988 TSPY4P0CV99 314 aa8.23□□□□□ -1.09
SCN1A-217ENST00000637988 TSPY10P0CW01 314 aa8.23□□□□□ -1.09
SCN1A-217ENST00000637988 AEBP2Q6ZN18 517 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-217ENST00000637988 SCRIBQ14160 1630 aa8.21□□□□□ -1.1
SCN1A-217ENST00000637988 EIF4G2P78344 907 aaKnown RBP eCLIP8.2□□□□□ -1.1
SCN1A-217ENST00000637988 TMX4Q9H1E5 349 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-217ENST00000637988 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-217ENST00000637988 TULP1O00294 542 aaPredicted RBP8.19□□□□□ -1.1
SCN1A-217ENST00000637988 GOLGA2Q08379 1002 aa8.19□□□□□ -1.1
SCN1A-217ENST00000637988 WDR43Q15061 677 aaKnown RBP eCLIP8.19□□□□□ -1.1
SCN1A-217ENST00000637988 ANP32AP39687 249 aaKnown RBP8.18□□□□□ -1.1
SCN1A-217ENST00000637988 LMOD2Q6P5Q4 547 aa8.17□□□□□ -1.1
SCN1A-217ENST00000637988 HRCP23327 699 aa8.17□□□□□ -1.1
SCN1A-217ENST00000637988 HDGFP51858 240 aaKnown RBP8.16□□□□□ -1.1
SCN1A-217ENST00000637988 DIEXFQ68CQ4 756 aaKnown RBP8.16□□□□□ -1.1
SCN1A-217ENST00000637988 DCAF8L1A6NGE4 600 aa8.16□□□□□ -1.1
SCN1A-217ENST00000637988 TONSLQ96HA7 1378 aa8.16□□□□□ -1.1
SCN1A-217ENST00000637988 LOC105371045A0A1W2PR82 267 aa8.15□□□□□ -1.1
SCN1A-217ENST00000637988 RB1CC1Q8TDY2 1594 aa8.15□□□□□ -1.1
SCN1A-217ENST00000637988 KCNH8Q96L42 1107 aa8.14□□□□□ -1.11
SCN1A-217ENST00000637988 ZRSR1Q15695 479 aaKnown RBP8.13□□□□□ -1.11
SCN1A-217ENST00000637988 ACIN1Q9UKV3 1341 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms