RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SLC24A1O60721 1099 aa6.51□□□□□ -1.37
SCN1A-221ENST00000641996 MYT1Q01538 1121 aa6.42□□□□□ -1.38
SCN1A-221ENST00000641996 PELP1Q8IZL8 1130 aaKnown RBP6.37□□□□□ -1.39
SCN1A-221ENST00000641996 EHMT2Q96KQ7 1210 aa6.21□□□□□ -1.42
SCN1A-221ENST00000641996 ERICH6Q7L0X2 663 aa6.18□□□□□ -1.42
SCN1A-221ENST00000641996 TTBK1Q5TCY1 1321 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-221ENST00000641996 RANGAP1P46060 587 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-221ENST00000641996 PRKCSHP14314 528 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-221ENST00000641996 PLPPR3Q6T4P5 718 aa5.88□□□□□ -1.47
SCN1A-221ENST00000641996 KAT6BQ8WYB5 2073 aa5.87□□□□□ -1.47
SCN1A-221ENST00000641996 DAXXQ9UER7 740 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-221ENST00000641996 EIF5BO60841 1220 aaKnown RBP5.85□□□□□ -1.47
SCN1A-221ENST00000641996 RTN4Q9NQC3 1192 aaKnown RBP5.74□□□□□ -1.49
SCN1A-221ENST00000641996 BCL11AQ9H165 835 aa5.71□□□□□ -1.5
SCN1A-221ENST00000641996 TULP1O00294 542 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-221ENST00000641996 HAP1P54257 671 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-221ENST00000641996 APLP2Q06481 763 aa5.63□□□□□ -1.51
SCN1A-221ENST00000641996 FAM9AQ8IZU1 332 aaPredicted RBP5.63□□□□□ -1.51
SCN1A-221ENST00000641996 PODXL2Q9NZ53 605 aa5.61□□□□□ -1.51
SCN1A-221ENST00000641996 POLR3GLQ9BT43 218 aa5.6□□□□□ -1.51
SCN1A-221ENST00000641996 PLEKHG5O94827 1062 aa5.6□□□□□ -1.51
SCN1A-221ENST00000641996 NCBP3Q53F19 620 aaKnown RBP5.59□□□□□ -1.51
SCN1A-221ENST00000641996 DCAF8L2P0C7V8 631 aa5.59□□□□□ -1.51
SCN1A-221ENST00000641996 TIMELESSQ9UNS1 1208 aa5.54□□□□□ -1.52
SCN1A-221ENST00000641996 CENPBP07199 599 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-221ENST00000641996 C14orf37Q86TY3 774 aa5.51□□□□□ -1.53
SCN1A-221ENST00000641996 KLHL34Q8N239 644 aa5.51□□□□□ -1.53
SCN1A-221ENST00000641996 TPRNQ4KMQ1 711 aa5.51□□□□□ -1.53
SCN1A-221ENST00000641996 HOMEZQ8IX15 550 aa5.51□□□□□ -1.53
SCN1A-221ENST00000641996 NPM2Q86SE8 214 aaKnown RBP5.5□□□□□ -1.53
SCN1A-221ENST00000641996 AMER1Q5JTC6 1135 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-221ENST00000641996 NEFLP07196 543 aa5.46□□□□□ -1.54
SCN1A-221ENST00000641996 A0A0U1RQG5 324 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-221ENST00000641996 SUPT5HO00267 1087 aaKnown RBP5.43□□□□□ -1.54
SCN1A-221ENST00000641996 ARXQ96QS3 562 aa5.43□□□□□ -1.54
SCN1A-221ENST00000641996 MYT1LQ9UL68 1186 aa5.42□□□□□ -1.54
SCN1A-221ENST00000641996 CCDC136Q96JN2 1154 aa5.42□□□□□ -1.54
SCN1A-221ENST00000641996 KCNA4P22459 653 aa5.4□□□□□ -1.54
SCN1A-221ENST00000641996 ZEB1P37275 1124 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-221ENST00000641996 CDK11BP21127 795 aaKnown RBP5.39□□□□□ -1.55
SCN1A-221ENST00000641996 CDK11AQ9UQ88 783 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-221ENST00000641996 PDE4CQ08493 712 aa5.37□□□□□ -1.55
SCN1A-221ENST00000641996 PKNOX2Q96KN3 472 aa5.37□□□□□ -1.55
SCN1A-221ENST00000641996 TAOK2Q9UL54 1235 aa5.37□□□□□ -1.55
SCN1A-221ENST00000641996 ARID3AQ99856 593 aa5.36□□□□□ -1.55
SCN1A-221ENST00000641996 CFAP44Q96MT7 982 aa5.36□□□□□ -1.55
SCN1A-221ENST00000641996 AEBP2Q6ZN18 517 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-221ENST00000641996 GLIPR1L2Q4G1C9 344 aa5.34□□□□□ -1.55
SCN1A-221ENST00000641996 PDIA4P13667 645 aaKnown RBP5.34□□□□□ -1.55
SCN1A-221ENST00000641996 CHIC1Q5VXU3 224 aa5.31□□□□□ -1.56
SCN1A-221ENST00000641996 CLSPNQ9HAW4 1339 aa5.31□□□□□ -1.56
SCN1A-221ENST00000641996 BCANQ96GW7 911 aa5.3□□□□□ -1.56
SCN1A-221ENST00000641996 GTF3C3Q9Y5Q9 886 aa5.3□□□□□ -1.56
SCN1A-221ENST00000641996 ZNF526Q8TF50 670 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-221ENST00000641996 DHX37Q8IY37 1157 aaKnown RBP5.27□□□□□ -1.57
SCN1A-221ENST00000641996 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-221ENST00000641996 RTL5Q5HYW3 569 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-221ENST00000641996 IRX6P78412 446 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-221ENST00000641996 YTHDC1Q96MU7 727 aaKnown RBP5.24□□□□□ -1.57
SCN1A-221ENST00000641996 PAXIP1Q6ZW49 1069 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-221ENST00000641996 CHMP4AQ9BY43 222 aa5.22□□□□□ -1.57
SCN1A-221ENST00000641996 SCAF1Q9H7N4 1312 aaKnown RBP5.22□□□□□ -1.57
SCN1A-221ENST00000641996 TRIM26Q12899 539 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-221ENST00000641996 ANO8Q9HCE9 1232 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-221ENST00000641996 NAP1L5Q96NT1 182 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-221ENST00000641996 BCL11BQ9C0K0 894 aaPredicted RBP5.2□□□□□ -1.58
SCN1A-221ENST00000641996 TAF7LQ5H9L4 462 aa5.18□□□□□ -1.58
SCN1A-221ENST00000641996 CSRNP3Q8WYN3 585 aa5.17□□□□□ -1.58
SCN1A-221ENST00000641996 UBE2Q2Q8WVN8 375 aa5.17□□□□□ -1.58
SCN1A-221ENST00000641996 ZNF326Q5BKZ1 582 aaKnown RBP5.17□□□□□ -1.58
SCN1A-221ENST00000641996 ARID4BQ4LE39 1312 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-221ENST00000641996 ANP32EQ9BTT0 268 aa5.17□□□□□ -1.58
SCN1A-221ENST00000641996 DEKP35659 375 aaKnown RBP5.16□□□□□ -1.58
SCN1A-221ENST00000641996 CCER1Q8TC90 406 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-221ENST00000641996 SLC4A1APQ9BWU0 796 aaKnown RBP5.12□□□□□ -1.59
SCN1A-221ENST00000641996 CCDC9Q9Y3X0 531 aaKnown RBP5.12□□□□□ -1.59
SCN1A-221ENST00000641996 BRD2P25440 801 aaKnown RBP5.11□□□□□ -1.59
SCN1A-221ENST00000641996 UBTFP17480 764 aaKnown RBP5.1□□□□□ -1.59
SCN1A-221ENST00000641996 HRCP23327 699 aa5.09□□□□□ -1.59
SCN1A-221ENST00000641996 PPARGC1BQ86YN6 1023 aaKnown RBP5.09□□□□□ -1.59
SCN1A-221ENST00000641996 HSP90B1P14625 803 aaKnown RBP5.08□□□□□ -1.6
SCN1A-221ENST00000641996 USP35Q9P2H5 1018 aa5.08□□□□□ -1.6
SCN1A-221ENST00000641996 VSIG10Q8N0Z9 540 aa5.07□□□□□ -1.6
SCN1A-221ENST00000641996 LOC105371045A0A1W2PR82 267 aa5.07□□□□□ -1.6
SCN1A-221ENST00000641996 PATL2C9JE40 543 aaKnown RBP5.06□□□□□ -1.6
SCN1A-221ENST00000641996 SHROOM4Q9ULL8 1493 aa5.06□□□□□ -1.6
SCN1A-221ENST00000641996 NBR1Q14596 966 aa5.05□□□□□ -1.6
SCN1A-221ENST00000641996 WWC1Q8IX03 1113 aa5.05□□□□□ -1.6
SCN1A-221ENST00000641996 SALL2Q9Y467 1007 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-221ENST00000641996 HMGB1P09429 215 aaKnown RBP5.04□□□□□ -1.6
SCN1A-221ENST00000641996 FBXO3Q9UK99 471 aa5.04□□□□□ -1.6
SCN1A-221ENST00000641996 PLCB2Q00722 1185 aa5.03□□□□□ -1.6
SCN1A-221ENST00000641996 PPM1GO15355 546 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-221ENST00000641996 PTMSP20962 102 aa5.02□□□□□ -1.61
SCN1A-221ENST00000641996 NCLP19338 710 aaKnown RBP5.02□□□□□ -1.61
SCN1A-221ENST00000641996 RBM10P98175 930 aaKnown RBP5.01□□□□□ -1.61
SCN1A-221ENST00000641996 TMEM132AQ24JP5 1023 aa5.01□□□□□ -1.61
SCN1A-221ENST00000641996 FKBP8Q14318 412 aa5.01□□□□□ -1.61
SCN1A-221ENST00000641996 ZBTB7CA1YPR0 619 aa5□□□□□ -1.61
SCN1A-221ENST00000641996 SAMD1Q6SPF0 538 aaPredicted RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms