RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FAM9AQ8IZU1 332 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-219ENST00000641575 PELP1Q8IZL8 1130 aaKnown RBP4.57□□□□□ -1.68
SCN1A-219ENST00000641575 MYT1Q01538 1121 aa4.53□□□□□ -1.68
SCN1A-219ENST00000641575 DCAF8L2P0C7V8 631 aa4.38□□□□□ -1.71
SCN1A-219ENST00000641575 ERICH6Q7L0X2 663 aa4.35□□□□□ -1.71
SCN1A-219ENST00000641575 TTBK1Q5TCY1 1321 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-219ENST00000641575 CCER1Q8TC90 406 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-219ENST00000641575 YTHDC1Q96MU7 727 aaKnown RBP4.25□□□□□ -1.73
SCN1A-219ENST00000641575 APLP2Q06481 763 aa4.24□□□□□ -1.73
SCN1A-219ENST00000641575 CENPBP07199 599 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-219ENST00000641575 NEFMP07197 916 aa4.13□□□□□ -1.75
SCN1A-219ENST00000641575 NEFLP07196 543 aa4.12□□□□□ -1.75
SCN1A-219ENST00000641575 KAT6BQ8WYB5 2073 aa4.12□□□□□ -1.75
SCN1A-219ENST00000641575 MYT1LQ9UL68 1186 aa4.1□□□□□ -1.75
SCN1A-219ENST00000641575 GON4LQ3T8J9 2241 aa4.09□□□□□ -1.75
SCN1A-219ENST00000641575 DAXXQ9UER7 740 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-219ENST00000641575 RTL5Q5HYW3 569 aaPredicted RBP4.05□□□□□ -1.76
SCN1A-219ENST00000641575 FOXD1Q16676 465 aa4.04□□□□□ -1.76
SCN1A-219ENST00000641575 ZEB1P37275 1124 aaPredicted RBP4.03□□□□□ -1.76
SCN1A-219ENST00000641575 DCAF8L1A6NGE4 600 aa4□□□□□ -1.77
SCN1A-219ENST00000641575 GLIPR1L2Q4G1C9 344 aa4□□□□□ -1.77
SCN1A-219ENST00000641575 ZNF316A6NFI3 1004 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-219ENST00000641575 RANGAP1P46060 587 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-219ENST00000641575 ATRXP46100 2492 aa3.98□□□□□ -1.77
SCN1A-219ENST00000641575 ESF1Q9H501 851 aaKnown RBP3.98□□□□□ -1.77
SCN1A-219ENST00000641575 ANO8Q9HCE9 1232 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-219ENST00000641575 KRI1Q8N9T8 703 aaKnown RBP3.96□□□□□ -1.78
SCN1A-219ENST00000641575 CDK11BP21127 795 aaKnown RBP3.96□□□□□ -1.78
SCN1A-219ENST00000641575 CDK11AQ9UQ88 783 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-219ENST00000641575 CSRNP3Q8WYN3 585 aa3.95□□□□□ -1.78
SCN1A-219ENST00000641575 ZBTB47Q9UFB7 747 aaPredicted RBP3.95□□□□□ -1.78
SCN1A-219ENST00000641575 NISCHQ9Y2I1 1504 aa3.95□□□□□ -1.78
SCN1A-219ENST00000641575 PCGF6Q9BYE7 350 aa3.94□□□□□ -1.78
SCN1A-219ENST00000641575 NPM2Q86SE8 214 aaKnown RBP3.94□□□□□ -1.78
SCN1A-219ENST00000641575 ATP1B4Q9UN42 357 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-219ENST00000641575 CLSPNQ9HAW4 1339 aa3.92□□□□□ -1.78
SCN1A-219ENST00000641575 TRIM26Q12899 539 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-219ENST00000641575 EIF5BO60841 1220 aaKnown RBP3.91□□□□□ -1.78
SCN1A-219ENST00000641575 AEBP2Q6ZN18 517 aaPredicted RBP3.9□□□□□ -1.78
SCN1A-219ENST00000641575 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-219ENST00000641575 HNRNPUL2Q1KMD3 747 aaKnown RBP3.9□□□□□ -1.79
SCN1A-219ENST00000641575 EHMT2Q96KQ7 1210 aa3.89□□□□□ -1.79
SCN1A-219ENST00000641575 SUPT5HO00267 1087 aaKnown RBP3.89□□□□□ -1.79
SCN1A-219ENST00000641575 NPM1P06748 294 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCN1A-219ENST00000641575 SLC4A1APQ9BWU0 796 aaKnown RBP3.88□□□□□ -1.79
SCN1A-219ENST00000641575 BCANQ96GW7 911 aa3.87□□□□□ -1.79
SCN1A-219ENST00000641575 KNL1Q8NG31 2342 aa3.85□□□□□ -1.79
SCN1A-219ENST00000641575 SLC24A1O60721 1099 aa3.85□□□□□ -1.79
SCN1A-219ENST00000641575 TNNT2P45379 298 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-219ENST00000641575 TMX4Q9H1E5 349 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-219ENST00000641575 BAZ2BQ9UIF8 2168 aaKnown RBP3.82□□□□□ -1.8
SCN1A-219ENST00000641575 ANP32BQ92688 251 aaKnown RBP3.82□□□□□ -1.8
SCN1A-219ENST00000641575 POLR3GLQ9BT43 218 aa3.82□□□□□ -1.8
SCN1A-219ENST00000641575 EIF4G2P78344 907 aaKnown RBP eCLIP3.82□□□□□ -1.8
SCN1A-219ENST00000641575 GOLGA4Q13439 2230 aaKnown RBP3.82□□□□□ -1.8
SCN1A-219ENST00000641575 CHIC1Q5VXU3 224 aa3.8□□□□□ -1.8
SCN1A-219ENST00000641575 HAP1P54257 671 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-219ENST00000641575 MAP3K9P80192 1104 aa3.79□□□□□ -1.8
SCN1A-219ENST00000641575 ANP32EQ9BTT0 268 aa3.79□□□□□ -1.8
SCN1A-219ENST00000641575 STAG3Q9UJ98 1225 aa3.79□□□□□ -1.8
SCN1A-219ENST00000641575 HMGB2P26583 209 aaKnown RBP3.78□□□□□ -1.8
SCN1A-219ENST00000641575 ANP32AP39687 249 aaKnown RBP3.78□□□□□ -1.8
SCN1A-219ENST00000641575 NPHP1O15259 732 aa3.78□□□□□ -1.8
SCN1A-219ENST00000641575 HRCP23327 699 aa3.77□□□□□ -1.81
SCN1A-219ENST00000641575 ZNF710Q8N1W2 664 aa3.76□□□□□ -1.81
SCN1A-219ENST00000641575 FKBP8Q14318 412 aa3.76□□□□□ -1.81
SCN1A-219ENST00000641575 GOLGA2Q08379 1002 aa3.75□□□□□ -1.81
SCN1A-219ENST00000641575 MYO10Q9HD67 2058 aa3.75□□□□□ -1.81
SCN1A-219ENST00000641575 SHROOM4Q9ULL8 1493 aa3.75□□□□□ -1.81
SCN1A-219ENST00000641575 ARID1AO14497 2285 aa3.74□□□□□ -1.81
SCN1A-219ENST00000641575 NCLP19338 710 aaKnown RBP3.74□□□□□ -1.81
SCN1A-219ENST00000641575 ZNF326Q5BKZ1 582 aaKnown RBP3.73□□□□□ -1.81
SCN1A-219ENST00000641575 MYO7AQ13402 2215 aa3.73□□□□□ -1.81
SCN1A-219ENST00000641575 SCAF1Q9H7N4 1312 aaKnown RBP3.73□□□□□ -1.81
SCN1A-219ENST00000641575 CNTRLQ7Z7A1 2325 aa3.73□□□□□ -1.81
SCN1A-219ENST00000641575 TRIM44Q96DX7 344 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-219ENST00000641575 GTF3C3Q9Y5Q9 886 aa3.72□□□□□ -1.81
SCN1A-219ENST00000641575 WDHD1O75717 1129 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-219ENST00000641575 HMGB3O15347 200 aaKnown RBP3.71□□□□□ -1.81
SCN1A-219ENST00000641575 HDGFP51858 240 aaKnown RBP3.71□□□□□ -1.81
SCN1A-219ENST00000641575 MAP1BP46821 2468 aaKnown RBP3.71□□□□□ -1.81
SCN1A-219ENST00000641575 CROCCQ5TZA2 2017 aa3.7□□□□□ -1.82
SCN1A-219ENST00000641575 UBTFP17480 764 aaKnown RBP3.7□□□□□ -1.82
SCN1A-219ENST00000641575 HSP90AA1P07900 732 aaKnown RBP3.7□□□□□ -1.82
SCN1A-219ENST00000641575 L1TD1Q5T7N2 865 aaKnown RBP3.7□□□□□ -1.82
SCN1A-219ENST00000641575 DIEXFQ68CQ4 756 aaKnown RBP3.7□□□□□ -1.82
SCN1A-219ENST00000641575 ACIN1Q9UKV3 1341 aaKnown RBP3.7□□□□□ -1.82
SCN1A-219ENST00000641575 NBR1Q14596 966 aa3.69□□□□□ -1.82
SCN1A-219ENST00000641575 A0A0G2JS52 829 aa3.69□□□□□ -1.82
SCN1A-219ENST00000641575 CANXP27824 592 aaKnown RBP3.69□□□□□ -1.82
SCN1A-219ENST00000641575 RP1L1Q8IWN7 2480 aaPredicted RBP3.69□□□□□ -1.82
SCN1A-219ENST00000641575 C14orf37Q86TY3 774 aa3.68□□□□□ -1.82
SCN1A-219ENST00000641575 CALRP27797 417 aaKnown RBP3.68□□□□□ -1.82
SCN1A-219ENST00000641575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.68□□□□□ -1.821e-6■■■□□ 16.7
SCN1A-219ENST00000641575 CUL9Q8IWT3 2517 aa3.68□□□□□ -1.82
SCN1A-219ENST00000641575 NAP1L5Q96NT1 182 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-219ENST00000641575 PPP4R2Q9NY27 417 aa3.67□□□□□ -1.82
SCN1A-219ENST00000641575 MYH10P35580 1976 aa3.67□□□□□ -1.82
SCN1A-219ENST00000641575 FBLN2P98095 1184 aa3.67□□□□□ -1.82
SCN1A-219ENST00000641575 WASHC2AQ641Q2 1341 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms