RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 DCAF8L2P0C7V8 631 aa11.63□□□□□ -0.55
SCN1A-204ENST00000423058 PELP1Q8IZL8 1130 aaKnown RBP11.1□□□□□ -0.63
SCN1A-204ENST00000423058 FAM9AQ8IZU1 332 aaPredicted RBP11.03□□□□□ -0.64
SCN1A-204ENST00000423058 APLP2Q06481 763 aa10.82□□□□□ -0.68
SCN1A-204ENST00000423058 SUPT5HO00267 1087 aaKnown RBP10.75□□□□□ -0.69
SCN1A-204ENST00000423058 CCER1Q8TC90 406 aaPredicted RBP10.61□□□□□ -0.71
SCN1A-204ENST00000423058 EHMT2Q96KQ7 1210 aa10.55□□□□□ -0.72
SCN1A-204ENST00000423058 ERICH6Q7L0X2 663 aa10.54□□□□□ -0.72
SCN1A-204ENST00000423058 NISCHQ9Y2I1 1504 aa10.49□□□□□ -0.73
SCN1A-204ENST00000423058 SHROOM4Q9ULL8 1493 aa10.47□□□□□ -0.73
SCN1A-204ENST00000423058 MYT1Q01538 1121 aa10.41□□□□□ -0.74
SCN1A-204ENST00000423058 ATP1B4Q9UN42 357 aaPredicted RBP10.35□□□□□ -0.75
SCN1A-204ENST00000423058 CENPBP07199 599 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-204ENST00000423058 NEFLP07196 543 aa10.26□□□□□ -0.77
SCN1A-204ENST00000423058 TTBK1Q5TCY1 1321 aaPredicted RBP10.22□□□□□ -0.77
SCN1A-204ENST00000423058 ZEB1P37275 1124 aaPredicted RBP10.21□□□□□ -0.78
SCN1A-204ENST00000423058 RANGAP1P46060 587 aaPredicted RBP10.2□□□□□ -0.78
SCN1A-204ENST00000423058 MYT1LQ9UL68 1186 aa10.18□□□□□ -0.78
SCN1A-204ENST00000423058 DAXXQ9UER7 740 aaPredicted RBP10.18□□□□□ -0.78
SCN1A-204ENST00000423058 PCGF6Q9BYE7 350 aa10.16□□□□□ -0.78
SCN1A-204ENST00000423058 YTHDC1Q96MU7 727 aaKnown RBP10.13□□□□□ -0.79
SCN1A-204ENST00000423058 UBTFP17480 764 aaKnown RBP10.11□□□□□ -0.79
SCN1A-204ENST00000423058 TRIM41Q8WV44 630 aa10.07□□□□□ -0.8
SCN1A-204ENST00000423058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10□□□□□ -0.81
SCN1A-204ENST00000423058 HNRNPUL2Q1KMD3 747 aaKnown RBP10□□□□□ -0.81
SCN1A-204ENST00000423058 SLC4A1APQ9BWU0 796 aaKnown RBP9.95□□□□□ -0.82
SCN1A-204ENST00000423058 POLR3GLQ9BT43 218 aa9.92□□□□□ -0.82
SCN1A-204ENST00000423058 CHIC1Q5VXU3 224 aa9.9□□□□□ -0.82
SCN1A-204ENST00000423058 ZNF316A6NFI3 1004 aaPredicted RBP9.87□□□□□ -0.83
SCN1A-204ENST00000423058 CLSPNQ9HAW4 1339 aa9.84□□□□□ -0.83
SCN1A-204ENST00000423058 ZBTB47Q9UFB7 747 aaPredicted RBP9.81□□□□□ -0.84
SCN1A-204ENST00000423058 ITGAEP38570 1179 aa9.76□□□□□ -0.85
SCN1A-204ENST00000423058 RTL5Q5HYW3 569 aaPredicted RBP9.74□□□□□ -0.85
SCN1A-204ENST00000423058 SLC24A1O60721 1099 aa9.69□□□□□ -0.86
SCN1A-204ENST00000423058 NEFMP07197 916 aa9.69□□□□□ -0.86
SCN1A-204ENST00000423058 CNGB1Q14028 1251 aaPredicted RBP9.68□□□□□ -0.86
SCN1A-204ENST00000423058 BCANQ96GW7 911 aa9.65□□□□□ -0.86
SCN1A-204ENST00000423058 TRIM26Q12899 539 aaPredicted RBP9.64□□□□□ -0.87
SCN1A-204ENST00000423058 PPARGC1BQ86YN6 1023 aaKnown RBP9.6□□□□□ -0.87
SCN1A-204ENST00000423058 TRIM52Q96A61 297 aa9.58□□□□□ -0.88
SCN1A-204ENST00000423058 CANXP27824 592 aaKnown RBP9.57□□□□□ -0.88
SCN1A-204ENST00000423058 ESF1Q9H501 851 aaKnown RBP9.56□□□□□ -0.88
SCN1A-204ENST00000423058 FAM50AQ14320 339 aaKnown RBP9.56□□□□□ -0.88
SCN1A-204ENST00000423058 FBLN2P98095 1184 aa9.47□□□□□ -0.89
SCN1A-204ENST00000423058 ANP32BQ92688 251 aaKnown RBP9.47□□□□□ -0.89
SCN1A-204ENST00000423058 ANP32CO43423 234 aa9.45□□□□□ -0.9
SCN1A-204ENST00000423058 BCL11AQ9H165 835 aa9.45□□□□□ -0.9
SCN1A-204ENST00000423058 CDK11AQ9UQ88 783 aaPredicted RBP9.44□□□□□ -0.9
SCN1A-204ENST00000423058 ZNF326Q5BKZ1 582 aaKnown RBP9.44□□□□□ -0.9
SCN1A-204ENST00000423058 STAG3Q9UJ98 1225 aa9.43□□□□□ -0.9
SCN1A-204ENST00000423058 CDK11BP21127 795 aaKnown RBP9.43□□□□□ -0.9
SCN1A-204ENST00000423058 HRCP23327 699 aa9.42□□□□□ -0.9
SCN1A-204ENST00000423058 NEUROD1Q13562 356 aa9.41□□□□□ -0.9
SCN1A-204ENST00000423058 HSP90AA1P07900 732 aaKnown RBP9.39□□□□□ -0.91
SCN1A-204ENST00000423058 DIEXFQ68CQ4 756 aaKnown RBP9.37□□□□□ -0.91
SCN1A-204ENST00000423058 NPM1P06748 294 aaKnown RBP eCLIP9.37□□□□□ -0.91
SCN1A-204ENST00000423058 UPF2Q9HAU5 1272 aaKnown RBP9.36□□□□□ -0.91
SCN1A-204ENST00000423058 ANP32AP39687 249 aaKnown RBP9.34□□□□□ -0.91
SCN1A-204ENST00000423058 NPM2Q86SE8 214 aaKnown RBP9.33□□□□□ -0.92
SCN1A-204ENST00000423058 PLPPR3Q6T4P5 718 aa9.29□□□□□ -0.92
SCN1A-204ENST00000423058 SCAF1Q9H7N4 1312 aaKnown RBP9.28□□□□□ -0.92
SCN1A-204ENST00000423058 CHGAP10645 457 aaKnown RBP9.26□□□□□ -0.93
SCN1A-204ENST00000423058 ZNF777Q9ULD5 760 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-204ENST00000423058 ABCC9O60706 1549 aa9.25□□□□□ -0.93
SCN1A-204ENST00000423058 A0A0G2JS52 829 aa9.24□□□□□ -0.93
SCN1A-204ENST00000423058 PABPN1Q86U42 306 aaKnown RBP eCLIP9.23□□□□□ -0.93
SCN1A-204ENST00000423058 LOC105371045A0A1W2PR82 267 aa9.23□□□□□ -0.93
SCN1A-204ENST00000423058 MYH16Q9H6N6 1097 aa9.22□□□□□ -0.93
SCN1A-204ENST00000423058 GLIPR1L2Q4G1C9 344 aa9.22□□□□□ -0.93
SCN1A-204ENST00000423058 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.22□□□□□ -0.93
SCN1A-204ENST00000423058 HAP1P54257 671 aaPredicted RBP9.16□□□□□ -0.94
SCN1A-204ENST00000423058 C14orf37Q86TY3 774 aa9.15□□□□□ -0.94
SCN1A-204ENST00000423058 ARID3CA6NKF2 412 aa9.15□□□□□ -0.95
SCN1A-204ENST00000423058 WDR43Q15061 677 aaKnown RBP eCLIP9.15□□□□□ -0.95
SCN1A-204ENST00000423058 EIF5BO60841 1220 aaKnown RBP9.14□□□□□ -0.95
SCN1A-204ENST00000423058 TONSLQ96HA7 1378 aa9.14□□□□□ -0.95
SCN1A-204ENST00000423058 NCLP19338 710 aaKnown RBP9.13□□□□□ -0.95
SCN1A-204ENST00000423058 ZRSR1Q15695 479 aaKnown RBP9.12□□□□□ -0.95
SCN1A-204ENST00000423058 P3H3Q8IVL6 736 aa9.12□□□□□ -0.95
SCN1A-204ENST00000423058 NPHP1O15259 732 aa9.11□□□□□ -0.95
SCN1A-204ENST00000423058 PPP1R15AO75807 674 aaPredicted RBP9.1□□□□□ -0.95
SCN1A-204ENST00000423058 ZBTB7CA1YPR0 619 aa9.09□□□□□ -0.95
SCN1A-204ENST00000423058 TMC1Q8TDI8 760 aa9.09□□□□□ -0.95
SCN1A-204ENST00000423058 CASC1Q6TDU7 716 aa9.08□□□□□ -0.96
SCN1A-204ENST00000423058 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.08□□□□□ -0.961e-6■■■□□ 16.7
SCN1A-204ENST00000423058 ACIN1Q9UKV3 1341 aaKnown RBP9.07□□□□□ -0.96
SCN1A-204ENST00000423058 TSPY4P0CV99 314 aa9.07□□□□□ -0.96
SCN1A-204ENST00000423058 TSPY10P0CW01 314 aa9.07□□□□□ -0.96
SCN1A-204ENST00000423058 ANP32EQ9BTT0 268 aa9.06□□□□□ -0.96
SCN1A-204ENST00000423058 ARXQ96QS3 562 aa9.05□□□□□ -0.96
SCN1A-204ENST00000423058 GOLGA6L22H0YM25 854 aa9.04□□□□□ -0.96
SCN1A-204ENST00000423058 GTF3C3Q9Y5Q9 886 aa9.04□□□□□ -0.96
SCN1A-204ENST00000423058 TULP1O00294 542 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-204ENST00000423058 BECN1Q14457 450 aa9.04□□□□□ -0.96
SCN1A-204ENST00000423058 ARID4BQ4LE39 1312 aaPredicted RBP9.04□□□□□ -0.96
SCN1A-204ENST00000423058 GOLGA2Q08379 1002 aa9.01□□□□□ -0.97
SCN1A-204ENST00000423058 CCDC136Q96JN2 1154 aa9.01□□□□□ -0.97
SCN1A-204ENST00000423058 EIF4G2P78344 907 aaKnown RBP eCLIP9.01□□□□□ -0.97
SCN1A-204ENST00000423058 TNNT2P45379 298 aaPredicted RBP9.01□□□□□ -0.97
SCN1A-204ENST00000423058 CHMP7Q8WUX9 453 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms