RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DCAF8L2P0C7V8 631 aa13.67□□□□□ -0.22
VPS13A-202ENST00000357409 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
VPS13A-202ENST00000357409 SUPT5HO00267 1087 aaKnown RBP12.53□□□□□ -0.4
VPS13A-202ENST00000357409 TTBK1Q5TCY1 1321 aaPredicted RBP12.36□□□□□ -0.43
VPS13A-202ENST00000357409 SHROOM4Q9ULL8 1493 aa12.27□□□□□ -0.44
VPS13A-202ENST00000357409 RANGAP1P46060 587 aaPredicted RBP12.22□□□□□ -0.45
VPS13A-202ENST00000357409 FAM9AQ8IZU1 332 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-202ENST00000357409 ATP1B4Q9UN42 357 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-202ENST00000357409 CHIC1Q5VXU3 224 aa11.75□□□□□ -0.53
VPS13A-202ENST00000357409 PPARGC1BQ86YN6 1023 aaKnown RBP11.75□□□□□ -0.53
VPS13A-202ENST00000357409 CNGB1Q14028 1251 aaPredicted RBP11.73□□□□□ -0.53
VPS13A-202ENST00000357409 PCGF6Q9BYE7 350 aa11.7□□□□□ -0.54
VPS13A-202ENST00000357409 APLP2Q06481 763 aa11.64□□□□□ -0.55
VPS13A-202ENST00000357409 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
VPS13A-202ENST00000357409 POLR3GLQ9BT43 218 aa11.48□□□□□ -0.57
VPS13A-202ENST00000357409 YTHDC1Q96MU7 727 aaKnown RBP11.48□□□□□ -0.57
VPS13A-202ENST00000357409 ITGAEP38570 1179 aa11.42□□□□□ -0.58
VPS13A-202ENST00000357409 MYT1Q01538 1121 aa11.36□□□□□ -0.59
VPS13A-202ENST00000357409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-202ENST00000357409 HNRNPUL2Q1KMD3 747 aaKnown RBP11.36□□□□□ -0.59
VPS13A-202ENST00000357409 ERICH6Q7L0X2 663 aa11.35□□□□□ -0.59
VPS13A-202ENST00000357409 CCER1Q8TC90 406 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-202ENST00000357409 UBTFP17480 764 aaKnown RBP11.32□□□□□ -0.6
VPS13A-202ENST00000357409 SLC4A1APQ9BWU0 796 aaKnown RBP11.31□□□□□ -0.6
VPS13A-202ENST00000357409 BCL11AQ9H165 835 aa11.24□□□□□ -0.61
VPS13A-202ENST00000357409 PLPPR3Q6T4P5 718 aa11.22□□□□□ -0.61
VPS13A-202ENST00000357409 TRIM41Q8WV44 630 aa11.22□□□□□ -0.61
VPS13A-202ENST00000357409 PELP1Q8IZL8 1130 aaKnown RBP11.2□□□□□ -0.62
VPS13A-202ENST00000357409 SLC24A1O60721 1099 aa11.07□□□□□ -0.64
VPS13A-202ENST00000357409 LOC105371045A0A1W2PR82 267 aa11.03□□□□□ -0.64
VPS13A-202ENST00000357409 ARID3CA6NKF2 412 aa10.98□□□□□ -0.65
VPS13A-202ENST00000357409 SENP3Q9H4L4 574 aaPredicted RBP10.97□□□□□ -0.65
VPS13A-202ENST00000357409 PLEKHG5O94827 1062 aa10.94□□□□□ -0.66
VPS13A-202ENST00000357409 FBLN2P98095 1184 aa10.93□□□□□ -0.66
VPS13A-202ENST00000357409 BCANQ96GW7 911 aa10.89□□□□□ -0.67
VPS13A-202ENST00000357409 NEFLP07196 543 aa10.89□□□□□ -0.67
VPS13A-202ENST00000357409 CENPBP07199 599 aaPredicted RBP10.88□□□□□ -0.67
VPS13A-202ENST00000357409 PABPN1Q86U42 306 aaKnown RBP eCLIP10.87□□□□□ -0.672e-6■□□□□ 9.6
VPS13A-202ENST00000357409 NEUROD1Q13562 356 aa10.85□□□□□ -0.67
VPS13A-202ENST00000357409 ZNF326Q5BKZ1 582 aaKnown RBP10.82□□□□□ -0.68
VPS13A-202ENST00000357409 TRIM52Q96A61 297 aa10.8□□□□□ -0.68
VPS13A-202ENST00000357409 FAM50AQ14320 339 aaKnown RBP10.79□□□□□ -0.68
VPS13A-202ENST00000357409 CLSPNQ9HAW4 1339 aa10.78□□□□□ -0.68
VPS13A-202ENST00000357409 P3H3Q8IVL6 736 aa10.78□□□□□ -0.68
VPS13A-202ENST00000357409 DAXXQ9UER7 740 aaPredicted RBP10.77□□□□□ -0.69
VPS13A-202ENST00000357409 NISCHQ9Y2I1 1504 aa10.77□□□□□ -0.69
VPS13A-202ENST00000357409 A0A0G2JS52 829 aa10.68□□□□□ -0.7
VPS13A-202ENST00000357409 SALL2Q9Y467 1007 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-202ENST00000357409 SCAF1Q9H7N4 1312 aaKnown RBP10.65□□□□□ -0.7
VPS13A-202ENST00000357409 CHGAP10645 457 aaKnown RBP10.63□□□□□ -0.71
VPS13A-202ENST00000357409 SENP3-EIF4A1A0A087X0R7 540 aa10.63□□□□□ -0.71
VPS13A-202ENST00000357409 ZNF777Q9ULD5 760 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-202ENST00000357409 ZBTB7CA1YPR0 619 aa10.58□□□□□ -0.72
VPS13A-202ENST00000357409 HRCP23327 699 aa10.55□□□□□ -0.72
VPS13A-202ENST00000357409 ZEB1P37275 1124 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-202ENST00000357409 ZNF316A6NFI3 1004 aaPredicted RBP10.52□□□□□ -0.73
VPS13A-202ENST00000357409 TRIM26Q12899 539 aaPredicted RBP10.51□□□□□ -0.73
VPS13A-202ENST00000357409 NPM2Q86SE8 214 aaKnown RBP10.47□□□□□ -0.73
VPS13A-202ENST00000357409 TULP1O00294 542 aaPredicted RBP10.46□□□□□ -0.74
VPS13A-202ENST00000357409 STAG3Q9UJ98 1225 aa10.43□□□□□ -0.74
VPS13A-202ENST00000357409 ARXQ96QS3 562 aa10.43□□□□□ -0.74
VPS13A-202ENST00000357409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.42□□□□□ -0.744e-6■■□□□ 11.8
VPS13A-202ENST00000357409 DIEXFQ68CQ4 756 aaKnown RBP10.4□□□□□ -0.74
VPS13A-202ENST00000357409 HIRIP3Q9BW71 556 aaPredicted RBP10.4□□□□□ -0.74
VPS13A-202ENST00000357409 TAOK2Q9UL54 1235 aa10.4□□□□□ -0.74
VPS13A-202ENST00000357409 CANXP27824 592 aaKnown RBP10.4□□□□□ -0.74
VPS13A-202ENST00000357409 ZBTB47Q9UFB7 747 aaPredicted RBP10.4□□□□□ -0.75
VPS13A-202ENST00000357409 TPRNQ4KMQ1 711 aa10.36□□□□□ -0.75
VPS13A-202ENST00000357409 ESF1Q9H501 851 aaKnown RBP10.36□□□□□ -0.75
VPS13A-202ENST00000357409 C14orf37Q86TY3 774 aa10.35□□□□□ -0.75
VPS13A-202ENST00000357409 ABCC9O60706 1549 aa10.34□□□□□ -0.75
VPS13A-202ENST00000357409 CHIC2Q9UKJ5 165 aa10.34□□□□□ -0.75
VPS13A-202ENST00000357409 KDM2AQ9Y2K7 1162 aa10.33□□□□□ -0.76
VPS13A-202ENST00000357409 AMER1Q5JTC6 1135 aaPredicted RBP10.33□□□□□ -0.76
VPS13A-202ENST00000357409 RTL5Q5HYW3 569 aaPredicted RBP10.31□□□□□ -0.76
VPS13A-202ENST00000357409 NCBP3Q53F19 620 aaKnown RBP10.3□□□□□ -0.76
VPS13A-202ENST00000357409 GTF3C3Q9Y5Q9 886 aa10.29□□□□□ -0.76
VPS13A-202ENST00000357409 FAM9BQ8IZU0 186 aa10.28□□□□□ -0.76
VPS13A-202ENST00000357409 IRX6P78412 446 aaPredicted RBP10.27□□□□□ -0.77
VPS13A-202ENST00000357409 KCNH8Q96L42 1107 aa10.25□□□□□ -0.77
VPS13A-202ENST00000357409 ANP32CO43423 234 aa10.24□□□□□ -0.77
VPS13A-202ENST00000357409 NEFMP07197 916 aa10.24□□□□□ -0.77
VPS13A-202ENST00000357409 LMOD2Q6P5Q4 547 aa10.22□□□□□ -0.77
VPS13A-202ENST00000357409 TRHP20396 242 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-202ENST00000357409 NPM1P06748 294 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS13A-202ENST00000357409 PPM1GO15355 546 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-202ENST00000357409 DDX10Q13206 875 aaKnown RBP10.17□□□□□ -0.78
VPS13A-202ENST00000357409 HAP1P54257 671 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-202ENST00000357409 SOX12O15370 315 aa10.17□□□□□ -0.78
VPS13A-202ENST00000357409 CDK11AQ9UQ88 783 aaPredicted RBP10.17□□□□□ -0.78
VPS13A-202ENST00000357409 ARID4BQ4LE39 1312 aaPredicted RBP10.16□□□□□ -0.78
VPS13A-202ENST00000357409 EIF5BO60841 1220 aaKnown RBP10.16□□□□□ -0.78
VPS13A-202ENST00000357409 RGL3Q3MIN7 710 aa10.16□□□□□ -0.78
VPS13A-202ENST00000357409 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.15□□□□□ -0.79
VPS13A-202ENST00000357409 FKBP8Q14318 412 aa10.14□□□□□ -0.79
VPS13A-202ENST00000357409 MLECQ14165 292 aa10.13□□□□□ -0.79
VPS13A-202ENST00000357409 NBR1Q14596 966 aa10.13□□□□□ -0.79
VPS13A-202ENST00000357409 HSP90AA1P07900 732 aaKnown RBP10.1□□□□□ -0.79
VPS13A-202ENST00000357409 LAS1LQ9Y4W2 734 aaKnown RBP10.09□□□□□ -0.79
VPS13A-202ENST00000357409 TMC1Q8TDI8 760 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms