RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NISCHQ9Y2I1 1504 aa8.9□□□□□ -0.98
SCN1A-201ENST00000303395 MYT1Q01538 1121 aa8.82□□□□□ -1
SCN1A-201ENST00000303395 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
SCN1A-201ENST00000303395 ZEB1P37275 1124 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-201ENST00000303395 TTBK1Q5TCY1 1321 aaPredicted RBP8.27□□□□□ -1.09
SCN1A-201ENST00000303395 CENPBP07199 599 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-201ENST00000303395 CCER1Q8TC90 406 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-201ENST00000303395 ERICH6Q7L0X2 663 aa8.05□□□□□ -1.12
SCN1A-201ENST00000303395 CLSPNQ9HAW4 1339 aa8.04□□□□□ -1.12
SCN1A-201ENST00000303395 DCAF8L2P0C7V8 631 aa8□□□□□ -1.13
SCN1A-201ENST00000303395 FAM9AQ8IZU1 332 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-201ENST00000303395 YTHDC1Q96MU7 727 aaKnown RBP7.89□□□□□ -1.15
SCN1A-201ENST00000303395 MYT1LQ9UL68 1186 aa7.83□□□□□ -1.16
SCN1A-201ENST00000303395 HRCP23327 699 aa7.81□□□□□ -1.16
SCN1A-201ENST00000303395 APLP2Q06481 763 aa7.78□□□□□ -1.16
SCN1A-201ENST00000303395 TRIM26Q12899 539 aaPredicted RBP7.76□□□□□ -1.17
SCN1A-201ENST00000303395 CCDC180Q9P1Z9 1646 aa7.76□□□□□ -1.17
SCN1A-201ENST00000303395 DCAF1Q9Y4B6 1507 aa7.74□□□□□ -1.17
SCN1A-201ENST00000303395 ACIN1Q9UKV3 1341 aaKnown RBP7.72□□□□□ -1.17
SCN1A-201ENST00000303395 DAXXQ9UER7 740 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-201ENST00000303395 SUPT5HO00267 1087 aaKnown RBP7.69□□□□□ -1.18
SCN1A-201ENST00000303395 NEFLP07196 543 aa7.66□□□□□ -1.18
SCN1A-201ENST00000303395 EEA1Q15075 1411 aa7.55□□□□□ -1.2
SCN1A-201ENST00000303395 PCGF6Q9BYE7 350 aa7.54□□□□□ -1.2
SCN1A-201ENST00000303395 ZCCHC6Q5VYS8 1495 aaKnown RBP7.54□□□□□ -1.2
SCN1A-201ENST00000303395 TRIM41Q8WV44 630 aa7.53□□□□□ -1.2
SCN1A-201ENST00000303395 SHROOM4Q9ULL8 1493 aa7.52□□□□□ -1.21
SCN1A-201ENST00000303395 MYO15BQ96JP2 1530 aa7.49□□□□□ -1.21
SCN1A-201ENST00000303395 CHIC1Q5VXU3 224 aa7.47□□□□□ -1.21
SCN1A-201ENST00000303395 ZNF316A6NFI3 1004 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-201ENST00000303395 EHMT2Q96KQ7 1210 aa7.41□□□□□ -1.22
SCN1A-201ENST00000303395 RTL5Q5HYW3 569 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-201ENST00000303395 ARID4BQ4LE39 1312 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-201ENST00000303395 GLIPR1L2Q4G1C9 344 aa7.33□□□□□ -1.24
SCN1A-201ENST00000303395 ATP1B4Q9UN42 357 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-201ENST00000303395 EIF5BO60841 1220 aaKnown RBP7.32□□□□□ -1.24
SCN1A-201ENST00000303395 ERICH6BQ5W0A0 696 aa7.32□□□□□ -1.24
SCN1A-201ENST00000303395 TIMELESSQ9UNS1 1208 aa7.32□□□□□ -1.24
SCN1A-201ENST00000303395 DIEXFQ68CQ4 756 aaKnown RBP7.31□□□□□ -1.24
SCN1A-201ENST00000303395 ZBTB47Q9UFB7 747 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-201ENST00000303395 ANP32EQ9BTT0 268 aa7.29□□□□□ -1.24
SCN1A-201ENST00000303395 SLC4A1APQ9BWU0 796 aaKnown RBP7.26□□□□□ -1.25
SCN1A-201ENST00000303395 NACADO15069 1562 aa7.25□□□□□ -1.25
SCN1A-201ENST00000303395 CDK11BP21127 795 aaKnown RBP7.24□□□□□ -1.25
SCN1A-201ENST00000303395 CDK11AQ9UQ88 783 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-201ENST00000303395 NEUROD1Q13562 356 aa7.23□□□□□ -1.25
SCN1A-201ENST00000303395 UBTFP17480 764 aaKnown RBP7.23□□□□□ -1.25
SCN1A-201ENST00000303395 NEFMP07197 916 aa7.2□□□□□ -1.26
SCN1A-201ENST00000303395 RB1CC1Q8TDY2 1594 aa7.2□□□□□ -1.26
SCN1A-201ENST00000303395 POLR3GLQ9BT43 218 aa7.17□□□□□ -1.26
SCN1A-201ENST00000303395 ANP32BQ92688 251 aaKnown RBP7.17□□□□□ -1.26
SCN1A-201ENST00000303395 ABCC9O60706 1549 aa7.17□□□□□ -1.26
SCN1A-201ENST00000303395 ANP32AP39687 249 aaKnown RBP7.15□□□□□ -1.26
SCN1A-201ENST00000303395 GOLGA3Q08378 1498 aa7.15□□□□□ -1.26
SCN1A-201ENST00000303395 WRNQ14191 1432 aaPredicted RBP eCLIP7.15□□□□□ -1.27
SCN1A-201ENST00000303395 ANP32CO43423 234 aa7.15□□□□□ -1.27
SCN1A-201ENST00000303395 SLC24A1O60721 1099 aa7.15□□□□□ -1.27
SCN1A-201ENST00000303395 RANGAP1P46060 587 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-201ENST00000303395 TNIKQ9UKE5 1360 aa7.14□□□□□ -1.27
SCN1A-201ENST00000303395 CEP164Q9UPV0 1460 aa7.14□□□□□ -1.27
SCN1A-201ENST00000303395 BAZ1AQ9NRL2 1556 aaPredicted RBP7.13□□□□□ -1.27
SCN1A-201ENST00000303395 GTF3C3Q9Y5Q9 886 aa7.09□□□□□ -1.27
SCN1A-201ENST00000303395 BAZ1BQ9UIG0 1483 aaKnown RBP7.09□□□□□ -1.27
SCN1A-201ENST00000303395 CSRNP3Q8WYN3 585 aa7.09□□□□□ -1.28
SCN1A-201ENST00000303395 NCLP19338 710 aaKnown RBP7.08□□□□□ -1.28
SCN1A-201ENST00000303395 DDRGK1Q96HY6 314 aa7.08□□□□□ -1.28
SCN1A-201ENST00000303395 RSF1Q96T23 1441 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-201ENST00000303395 CCER2I3L3R5 266 aa7.06□□□□□ -1.28
SCN1A-201ENST00000303395 CFAP44Q96MT7 982 aa7.06□□□□□ -1.28
SCN1A-201ENST00000303395 PPM1GO15355 546 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-201ENST00000303395 FHAD1B1AJZ9 1412 aa7.05□□□□□ -1.28
SCN1A-201ENST00000303395 PTMSP20962 102 aa7.05□□□□□ -1.28
SCN1A-201ENST00000303395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-201ENST00000303395 HNRNPUL2Q1KMD3 747 aaKnown RBP7.04□□□□□ -1.28
SCN1A-201ENST00000303395 USP35Q9P2H5 1018 aa7.03□□□□□ -1.28
SCN1A-201ENST00000303395 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.02□□□□□ -1.28
SCN1A-201ENST00000303395 UPF2Q9HAU5 1272 aaKnown RBP7.01□□□□□ -1.29
SCN1A-201ENST00000303395 CANXP27824 592 aaKnown RBP7.01□□□□□ -1.29
SCN1A-201ENST00000303395 CLIP1P30622 1438 aa7.01□□□□□ -1.29
SCN1A-201ENST00000303395 HSP90AA1P07900 732 aaKnown RBP7.01□□□□□ -1.29
SCN1A-201ENST00000303395 CEP162Q5TB80 1403 aa7□□□□□ -1.29
SCN1A-201ENST00000303395 CHMP4BQ9H444 224 aaKnown RBP6.99□□□□□ -1.29
SCN1A-201ENST00000303395 TONSLQ96HA7 1378 aa6.99□□□□□ -1.29
SCN1A-201ENST00000303395 CNGB1Q14028 1251 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-201ENST00000303395 BCL11AQ9H165 835 aa6.99□□□□□ -1.29
SCN1A-201ENST00000303395 TRIM44Q96DX7 344 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-201ENST00000303395 NGEFQ8N5V2 710 aa6.97□□□□□ -1.29
SCN1A-201ENST00000303395 VPS8Q8N3P4 1428 aa6.97□□□□□ -1.29
SCN1A-201ENST00000303395 PHLDB1Q86UU1 1377 aa6.96□□□□□ -1.29
SCN1A-201ENST00000303395 BECN1Q14457 450 aa6.95□□□□□ -1.3
SCN1A-201ENST00000303395 TNNT2P45379 298 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-201ENST00000303395 ROCK2O75116 1388 aaKnown RBP6.95□□□□□ -1.3
SCN1A-201ENST00000303395 AAMPQ13685 434 aa6.94□□□□□ -1.3
SCN1A-201ENST00000303395 KTN1Q86UP2 1357 aaKnown RBP6.94□□□□□ -1.3
SCN1A-201ENST00000303395 BCANQ96GW7 911 aa6.94□□□□□ -1.3
SCN1A-201ENST00000303395 KIF27Q86VH2 1401 aa6.94□□□□□ -1.3
SCN1A-201ENST00000303395 SMARCA2P51531 1590 aa6.93□□□□□ -1.3
SCN1A-201ENST00000303395 MS4A1P11836 297 aa6.93□□□□□ -1.3
SCN1A-201ENST00000303395 CDCA8Q53HL2 280 aa6.93□□□□□ -1.3
SCN1A-201ENST00000303395 IL27Q8NEV9 243 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms