RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 DCAF8L2P0C7V8 631 aa9.43□□□□□ -0.9
SCN1A-209ENST00000635750 PELP1Q8IZL8 1130 aaKnown RBP9.04□□□□□ -0.96
SCN1A-209ENST00000635750 FAM9AQ8IZU1 332 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-209ENST00000635750 APLP2Q06481 763 aa8.76□□□□□ -1.01
SCN1A-209ENST00000635750 SUPT5HO00267 1087 aaKnown RBP8.69□□□□□ -1.02
SCN1A-209ENST00000635750 ERICH6Q7L0X2 663 aa8.64□□□□□ -1.03
SCN1A-209ENST00000635750 CCER1Q8TC90 406 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-209ENST00000635750 EHMT2Q96KQ7 1210 aa8.63□□□□□ -1.03
SCN1A-209ENST00000635750 ATP1B4Q9UN42 357 aaPredicted RBP8.42□□□□□ -1.06
SCN1A-209ENST00000635750 SHROOM4Q9ULL8 1493 aa8.42□□□□□ -1.06
SCN1A-209ENST00000635750 NEFLP07196 543 aa8.35□□□□□ -1.07
SCN1A-209ENST00000635750 TTBK1Q5TCY1 1321 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-209ENST00000635750 CENPBP07199 599 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-209ENST00000635750 RANGAP1P46060 587 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-209ENST00000635750 DAXXQ9UER7 740 aaPredicted RBP8.31□□□□□ -1.08
SCN1A-209ENST00000635750 MYT1LQ9UL68 1186 aa8.3□□□□□ -1.08
SCN1A-209ENST00000635750 PCGF6Q9BYE7 350 aa8.26□□□□□ -1.09
SCN1A-209ENST00000635750 YTHDC1Q96MU7 727 aaKnown RBP8.25□□□□□ -1.09
SCN1A-209ENST00000635750 NISCHQ9Y2I1 1504 aa8.22□□□□□ -1.09
SCN1A-209ENST00000635750 ZEB1P37275 1124 aaPredicted RBP8.21□□□□□ -1.1
SCN1A-209ENST00000635750 MYT1Q01538 1121 aa8.16□□□□□ -1.1
SCN1A-209ENST00000635750 UBTFP17480 764 aaKnown RBP8.16□□□□□ -1.1
SCN1A-209ENST00000635750 SLC4A1APQ9BWU0 796 aaKnown RBP8.13□□□□□ -1.11
SCN1A-209ENST00000635750 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.11□□□□□ -1.11
SCN1A-209ENST00000635750 HNRNPUL2Q1KMD3 747 aaKnown RBP8.11□□□□□ -1.11
SCN1A-209ENST00000635750 CHIC1Q5VXU3 224 aa8.11□□□□□ -1.11
SCN1A-209ENST00000635750 POLR3GLQ9BT43 218 aa8.11□□□□□ -1.11
SCN1A-209ENST00000635750 TRIM41Q8WV44 630 aa8.09□□□□□ -1.11
SCN1A-209ENST00000635750 ZNF316A6NFI3 1004 aaPredicted RBP8.05□□□□□ -1.12
SCN1A-209ENST00000635750 CLSPNQ9HAW4 1339 aa8.03□□□□□ -1.12
SCN1A-209ENST00000635750 ZBTB47Q9UFB7 747 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-209ENST00000635750 RTL5Q5HYW3 569 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-209ENST00000635750 CNGB1Q14028 1251 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-209ENST00000635750 SLC24A1O60721 1099 aa7.93□□□□□ -1.14
SCN1A-209ENST00000635750 ITGAEP38570 1179 aa7.93□□□□□ -1.14
SCN1A-209ENST00000635750 BCANQ96GW7 911 aa7.86□□□□□ -1.15
SCN1A-209ENST00000635750 NEFMP07197 916 aa7.85□□□□□ -1.15
SCN1A-209ENST00000635750 PPARGC1BQ86YN6 1023 aaKnown RBP7.81□□□□□ -1.16
SCN1A-209ENST00000635750 CANXP27824 592 aaKnown RBP7.79□□□□□ -1.16
SCN1A-209ENST00000635750 BCL11AQ9H165 835 aa7.77□□□□□ -1.17
SCN1A-209ENST00000635750 TRIM52Q96A61 297 aa7.76□□□□□ -1.17
SCN1A-209ENST00000635750 ESF1Q9H501 851 aaKnown RBP7.74□□□□□ -1.17
SCN1A-209ENST00000635750 TRIM26Q12899 539 aaPredicted RBP7.74□□□□□ -1.17
SCN1A-209ENST00000635750 FAM50AQ14320 339 aaKnown RBP7.73□□□□□ -1.17
SCN1A-209ENST00000635750 CDK11BP21127 795 aaKnown RBP7.71□□□□□ -1.17
SCN1A-209ENST00000635750 CDK11AQ9UQ88 783 aaPredicted RBP7.71□□□□□ -1.17
SCN1A-209ENST00000635750 ANP32BQ92688 251 aaKnown RBP7.71□□□□□ -1.17
SCN1A-209ENST00000635750 ZNF326Q5BKZ1 582 aaKnown RBP7.67□□□□□ -1.18
SCN1A-209ENST00000635750 FBLN2P98095 1184 aa7.66□□□□□ -1.18
SCN1A-209ENST00000635750 HSP90AA1P07900 732 aaKnown RBP7.65□□□□□ -1.19
SCN1A-209ENST00000635750 STAG3Q9UJ98 1225 aa7.65□□□□□ -1.19
SCN1A-209ENST00000635750 ANP32CO43423 234 aa7.64□□□□□ -1.19
SCN1A-209ENST00000635750 NEUROD1Q13562 356 aa7.63□□□□□ -1.19
SCN1A-209ENST00000635750 HRCP23327 699 aa7.61□□□□□ -1.19
SCN1A-209ENST00000635750 PLPPR3Q6T4P5 718 aa7.6□□□□□ -1.19
SCN1A-209ENST00000635750 NPM2Q86SE8 214 aaKnown RBP7.59□□□□□ -1.19
SCN1A-209ENST00000635750 UPF2Q9HAU5 1272 aaKnown RBP7.59□□□□□ -1.19
SCN1A-209ENST00000635750 ANP32AP39687 249 aaKnown RBP7.58□□□□□ -1.2
SCN1A-209ENST00000635750 SCAF1Q9H7N4 1312 aaKnown RBP7.58□□□□□ -1.2
SCN1A-209ENST00000635750 A0A0G2JS52 829 aa7.57□□□□□ -1.2
SCN1A-209ENST00000635750 DIEXFQ68CQ4 756 aaKnown RBP7.56□□□□□ -1.2
SCN1A-209ENST00000635750 NPM1P06748 294 aaKnown RBP eCLIP7.55□□□□□ -1.2
SCN1A-209ENST00000635750 CHGAP10645 457 aaKnown RBP7.52□□□□□ -1.21
SCN1A-209ENST00000635750 GLIPR1L2Q4G1C9 344 aa7.52□□□□□ -1.21
SCN1A-209ENST00000635750 ZNF777Q9ULD5 760 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-209ENST00000635750 MYH16Q9H6N6 1097 aa7.47□□□□□ -1.21
SCN1A-209ENST00000635750 EIF5BO60841 1220 aaKnown RBP7.46□□□□□ -1.22
SCN1A-209ENST00000635750 HAP1P54257 671 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-209ENST00000635750 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-209ENST00000635750 TULP1O00294 542 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-209ENST00000635750 C14orf37Q86TY3 774 aa7.44□□□□□ -1.22
SCN1A-209ENST00000635750 LOC105371045A0A1W2PR82 267 aa7.43□□□□□ -1.22
SCN1A-209ENST00000635750 ZBTB7CA1YPR0 619 aa7.43□□□□□ -1.22
SCN1A-209ENST00000635750 ZRSR1Q15695 479 aaKnown RBP7.43□□□□□ -1.22
SCN1A-209ENST00000635750 NPHP1O15259 732 aa7.43□□□□□ -1.22
SCN1A-209ENST00000635750 NCLP19338 710 aaKnown RBP7.42□□□□□ -1.22
SCN1A-209ENST00000635750 ARID3CA6NKF2 412 aa7.42□□□□□ -1.22
SCN1A-209ENST00000635750 WDR43Q15061 677 aaKnown RBP eCLIP7.4□□□□□ -1.23
SCN1A-209ENST00000635750 ARXQ96QS3 562 aa7.4□□□□□ -1.23
SCN1A-209ENST00000635750 PABPN1Q86U42 306 aaKnown RBP eCLIP7.39□□□□□ -1.23
SCN1A-209ENST00000635750 PLEKHG5O94827 1062 aa7.37□□□□□ -1.23
SCN1A-209ENST00000635750 NCBP3Q53F19 620 aaKnown RBP7.37□□□□□ -1.23
SCN1A-209ENST00000635750 P3H3Q8IVL6 736 aa7.37□□□□□ -1.23
SCN1A-209ENST00000635750 PPP1R15AO75807 674 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-209ENST00000635750 TRIM44Q96DX7 344 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-209ENST00000635750 CASC1Q6TDU7 716 aa7.35□□□□□ -1.23
SCN1A-209ENST00000635750 TNNT2P45379 298 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-209ENST00000635750 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.35□□□□□ -1.231e-6■■■□□ 16.7
SCN1A-209ENST00000635750 TMC1Q8TDI8 760 aa7.34□□□□□ -1.23
SCN1A-209ENST00000635750 TONSLQ96HA7 1378 aa7.34□□□□□ -1.23
SCN1A-209ENST00000635750 GOLGA6L22H0YM25 854 aa7.34□□□□□ -1.23
SCN1A-209ENST00000635750 GOLGA2Q08379 1002 aa7.33□□□□□ -1.24
SCN1A-209ENST00000635750 GTF3C3Q9Y5Q9 886 aa7.33□□□□□ -1.24
SCN1A-209ENST00000635750 CLSTN1O94985 981 aa7.32□□□□□ -1.24
SCN1A-209ENST00000635750 ANP32EQ9BTT0 268 aa7.32□□□□□ -1.24
SCN1A-209ENST00000635750 SALL2Q9Y467 1007 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-209ENST00000635750 ABCC9O60706 1549 aa7.32□□□□□ -1.24
SCN1A-209ENST00000635750 BECN1Q14457 450 aa7.32□□□□□ -1.24
SCN1A-209ENST00000635750 ARID4BQ4LE39 1312 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-209ENST00000635750 GOLGA6L6A8MZA4 724 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms