RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 MYT1Q01538 1121 aa11.69□□□□□ -0.54
UBR4-204ENST00000375254 PELP1Q8IZL8 1130 aaKnown RBP11.48□□□□□ -0.57
UBR4-204ENST00000375254 TTBK1Q5TCY1 1321 aaPredicted RBP10.78□□□□□ -0.68
UBR4-204ENST00000375254 CCER1Q8TC90 406 aaPredicted RBP10.61□□□□□ -0.71
UBR4-204ENST00000375254 YTHDC1Q96MU7 727 aaKnown RBP10.51□□□□□ -0.73
UBR4-204ENST00000375254 CENPBP07199 599 aaPredicted RBP10.49□□□□□ -0.73
UBR4-204ENST00000375254 ZEB1P37275 1124 aaPredicted RBP10.43□□□□□ -0.74
UBR4-204ENST00000375254 ERICH6Q7L0X2 663 aa10.41□□□□□ -0.74
UBR4-204ENST00000375254 NEFLP07196 543 aa9.99□□□□□ -0.81
UBR4-204ENST00000375254 MYT1LQ9UL68 1186 aa9.95□□□□□ -0.82
UBR4-204ENST00000375254 PCGF6Q9BYE7 350 aa9.92□□□□□ -0.82
UBR4-204ENST00000375254 GLIPR1L2Q4G1C9 344 aa9.91□□□□□ -0.82
UBR4-204ENST00000375254 HRCP23327 699 aa9.86□□□□□ -0.83
UBR4-204ENST00000375254 DAXXQ9UER7 740 aaPredicted RBP9.85□□□□□ -0.83
UBR4-204ENST00000375254 RTL5Q5HYW3 569 aaPredicted RBP9.79□□□□□ -0.84
UBR4-204ENST00000375254 RANGAP1P46060 587 aaPredicted RBP9.75□□□□□ -0.85
UBR4-204ENST00000375254 APLP2Q06481 763 aa9.75□□□□□ -0.85
UBR4-204ENST00000375254 SUPT5HO00267 1087 aaKnown RBP9.66□□□□□ -0.86
UBR4-204ENST00000375254 CLSPNQ9HAW4 1339 aa9.65□□□□□ -0.87
UBR4-204ENST00000375254 TRIM26Q12899 539 aaPredicted RBP9.62□□□□□ -0.87
UBR4-204ENST00000375254 FAM9AQ8IZU1 332 aaPredicted RBP9.57□□□□□ -0.88
UBR4-204ENST00000375254 DCAF8L2P0C7V8 631 aa9.55□□□□□ -0.88
UBR4-204ENST00000375254 CDK11AQ9UQ88 783 aaPredicted RBP9.52□□□□□ -0.89
UBR4-204ENST00000375254 ZNF316A6NFI3 1004 aaPredicted RBP9.5□□□□□ -0.89
UBR4-204ENST00000375254 EIF5BO60841 1220 aaKnown RBP9.45□□□□□ -0.9
UBR4-204ENST00000375254 NCLP19338 710 aaKnown RBP9.45□□□□□ -0.9
UBR4-204ENST00000375254 GTF3C3Q9Y5Q9 886 aa9.45□□□□□ -0.9
UBR4-204ENST00000375254 DIEXFQ68CQ4 756 aaKnown RBP9.45□□□□□ -0.9
UBR4-204ENST00000375254 ACIN1Q9UKV3 1341 aaKnown RBP9.43□□□□□ -0.9
UBR4-204ENST00000375254 TNNT2P45379 298 aaPredicted RBP9.43□□□□□ -0.9
UBR4-204ENST00000375254 ANP32BQ92688 251 aaKnown RBP9.37□□□□□ -0.91
UBR4-204ENST00000375254 ANP32EQ9BTT0 268 aa9.34□□□□□ -0.91
UBR4-204ENST00000375254 ANP32AP39687 249 aaKnown RBP9.32□□□□□ -0.92
UBR4-204ENST00000375254 SLC24A1O60721 1099 aa9.3□□□□□ -0.92
UBR4-204ENST00000375254 ERICH6BQ5W0A0 696 aa9.27□□□□□ -0.93
UBR4-204ENST00000375254 TRIM44Q96DX7 344 aaPredicted RBP9.26□□□□□ -0.93
UBR4-204ENST00000375254 BCL11AQ9H165 835 aa9.2□□□□□ -0.94
UBR4-204ENST00000375254 ZBTB47Q9UFB7 747 aaPredicted RBP9.17□□□□□ -0.94
UBR4-204ENST00000375254 PTMSP20962 102 aa9.16□□□□□ -0.94
UBR4-204ENST00000375254 TRIM41Q8WV44 630 aa9.15□□□□□ -0.95
UBR4-204ENST00000375254 EHMT2Q96KQ7 1210 aa9.15□□□□□ -0.95
UBR4-204ENST00000375254 ZNF326Q5BKZ1 582 aaKnown RBP9.13□□□□□ -0.95
UBR4-204ENST00000375254 PPARGC1BQ86YN6 1023 aaKnown RBP9.12□□□□□ -0.95
UBR4-204ENST00000375254 POLR3GLQ9BT43 218 aa9.09□□□□□ -0.95
UBR4-204ENST00000375254 ANP32CO43423 234 aa9.08□□□□□ -0.96
UBR4-204ENST00000375254 CDK11BP21127 795 aaKnown RBP9.04□□□□□ -0.96
UBR4-204ENST00000375254 PPM1GO15355 546 aaPredicted RBP9.03□□□□□ -0.96
UBR4-204ENST00000375254 SCAF1Q9H7N4 1312 aaKnown RBP9.03□□□□□ -0.96
UBR4-204ENST00000375254 DDRGK1Q96HY6 314 aa9.03□□□□□ -0.96
UBR4-204ENST00000375254 UPF2Q9HAU5 1272 aaKnown RBP9.02□□□□□ -0.97
UBR4-204ENST00000375254 UBTFP17480 764 aaKnown RBP8.99□□□□□ -0.97
UBR4-204ENST00000375254 RSPH6AQ9H0K4 717 aa8.99□□□□□ -0.97
UBR4-204ENST00000375254 NEUROD1Q13562 356 aa8.98□□□□□ -0.97
UBR4-204ENST00000375254 NEFMP07197 916 aa8.98□□□□□ -0.97
UBR4-204ENST00000375254 ARID4BQ4LE39 1312 aaPredicted RBP8.98□□□□□ -0.97
UBR4-204ENST00000375254 HSP90AA1P07900 732 aaKnown RBP8.96□□□□□ -0.98
UBR4-204ENST00000375254 BCANQ96GW7 911 aa8.94□□□□□ -0.98
UBR4-204ENST00000375254 BECN1Q14457 450 aa8.93□□□□□ -0.98
UBR4-204ENST00000375254 FKBP8Q14318 412 aa8.93□□□□□ -0.98
UBR4-204ENST00000375254 NBR1Q14596 966 aa8.91□□□□□ -0.98
UBR4-204ENST00000375254 L1TD1Q5T7N2 865 aaKnown RBP8.89□□□□□ -0.99
UBR4-204ENST00000375254 GOLGA6L22H0YM25 854 aa8.87□□□□□ -0.99
UBR4-204ENST00000375254 USP35Q9P2H5 1018 aa8.86□□□□□ -0.99
UBR4-204ENST00000375254 DEKP35659 375 aaKnown RBP8.86□□□□□ -0.99
UBR4-204ENST00000375254 NAP1L5Q96NT1 182 aaPredicted RBP8.86□□□□□ -0.99
UBR4-204ENST00000375254 LAS1LQ9Y4W2 734 aaKnown RBP8.86□□□□□ -0.99
UBR4-204ENST00000375254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.85□□□□□ -0.99
UBR4-204ENST00000375254 NISCHQ9Y2I1 1504 aa8.85□□□□□ -0.99
UBR4-204ENST00000375254 CALRP27797 417 aaKnown RBP8.85□□□□□ -0.99
UBR4-204ENST00000375254 TNNT3P45378 269 aaPredicted RBP8.85□□□□□ -0.99
UBR4-204ENST00000375254 CHIC1Q5VXU3 224 aa8.84□□□□□ -0.99
UBR4-204ENST00000375254 CNGB1Q14028 1251 aaPredicted RBP8.83□□□□□ -1
UBR4-204ENST00000375254 HSP90AA2PQ14568 343 aaPredicted RBP8.82□□□□□ -1
UBR4-204ENST00000375254 NOP58Q9Y2X3 529 aaKnown RBP8.82□□□□□ -1
UBR4-204ENST00000375254 CCDC136Q96JN2 1154 aa8.81□□□□□ -1
UBR4-204ENST00000375254 SHROOM4Q9ULL8 1493 aa8.81□□□□□ -1
UBR4-204ENST00000375254 LOC105371045A0A1W2PR82 267 aa8.81□□□□□ -1
UBR4-204ENST00000375254 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.79□□□□□ -1
UBR4-204ENST00000375254 PNNQ9H307 717 aaKnown RBP8.78□□□□□ -1
UBR4-204ENST00000375254 NPM2Q86SE8 214 aaKnown RBP8.78□□□□□ -1
UBR4-204ENST00000375254 CHAF1AQ13111 956 aaPredicted RBP8.77□□□□□ -1
UBR4-204ENST00000375254 GOLGA6L3A6NEY3 463 aa8.76□□□□□ -1.01
UBR4-204ENST00000375254 HNRNPUL2Q1KMD3 747 aaKnown RBP8.76□□□□□ -1.01
UBR4-204ENST00000375254 MTERF4Q7Z6M4 381 aaKnown RBP8.76□□□□□ -1.01
UBR4-204ENST00000375254 PODXL2Q9NZ53 605 aa8.74□□□□□ -1.01
UBR4-204ENST00000375254 ATP1B4Q9UN42 357 aaPredicted RBP8.73□□□□□ -1.01
UBR4-204ENST00000375254 MAP7D2Q96T17 732 aa8.73□□□□□ -1.01
UBR4-204ENST00000375254 PPP4R2Q9NY27 417 aa8.73□□□□□ -1.01
UBR4-204ENST00000375254 RBM19Q9Y4C8 960 aaKnown RBP8.72□□□□□ -1.01
UBR4-204ENST00000375254 VSIG10Q8N0Z9 540 aa8.72□□□□□ -1.01
UBR4-204ENST00000375254 DNTTIP2Q5QJE6 756 aaKnown RBP8.71□□□□□ -1.01
UBR4-204ENST00000375254 PTMAP06454 111 aaKnown RBP8.71□□□□□ -1.02
UBR4-204ENST00000375254 NRDCO43847 1150 aa8.71□□□□□ -1.02
UBR4-204ENST00000375254 A0A0U1RQG5 324 aaPredicted RBP8.7□□□□□ -1.02
UBR4-204ENST00000375254 APPP05067 770 aa8.7□□□□□ -1.02
UBR4-204ENST00000375254 MSNP26038 577 aaKnown RBP8.69□□□□□ -1.02
UBR4-204ENST00000375254 CANXP27824 592 aaKnown RBP8.68□□□□□ -1.02
UBR4-204ENST00000375254 PKNOX2Q96KN3 472 aa8.68□□□□□ -1.02
UBR4-204ENST00000375254 PRKCSHP14314 528 aaPredicted RBP8.68□□□□□ -1.02
UBR4-204ENST00000375254 CSRNP3Q8WYN3 585 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms