RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DCAF8L2P0C7V8 631 aa9.34□□□□□ -0.91
SCN1A-218ENST00000640036 FAM9AQ8IZU1 332 aaPredicted RBP8.62□□□□□ -1.03
SCN1A-218ENST00000640036 NISCHQ9Y2I1 1504 aa8.61□□□□□ -1.03
SCN1A-218ENST00000640036 SUPT5HO00267 1087 aaKnown RBP8.1□□□□□ -1.11
SCN1A-218ENST00000640036 APLP2Q06481 763 aa8.08□□□□□ -1.12
SCN1A-218ENST00000640036 MYT1LQ9UL68 1186 aa8.04□□□□□ -1.12
SCN1A-218ENST00000640036 SHROOM4Q9ULL8 1493 aa8.03□□□□□ -1.12
SCN1A-218ENST00000640036 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-218ENST00000640036 ABCC9O60706 1549 aa7.93□□□□□ -1.14
SCN1A-218ENST00000640036 PELP1Q8IZL8 1130 aaKnown RBP7.92□□□□□ -1.14
SCN1A-218ENST00000640036 EHMT2Q96KQ7 1210 aa7.9□□□□□ -1.15
SCN1A-218ENST00000640036 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-218ENST00000640036 HNRNPUL2Q1KMD3 747 aaKnown RBP7.87□□□□□ -1.15
SCN1A-218ENST00000640036 TTBK1Q5TCY1 1321 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-218ENST00000640036 RANGAP1P46060 587 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-218ENST00000640036 PABPN1Q86U42 306 aaKnown RBP eCLIP7.81□□□□□ -1.16
SCN1A-218ENST00000640036 FBLN2P98095 1184 aa7.77□□□□□ -1.17
SCN1A-218ENST00000640036 NPM1P06748 294 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCN1A-218ENST00000640036 CHIC1Q5VXU3 224 aa7.72□□□□□ -1.17
SCN1A-218ENST00000640036 ESF1Q9H501 851 aaKnown RBP7.69□□□□□ -1.18
SCN1A-218ENST00000640036 UBTFP17480 764 aaKnown RBP7.68□□□□□ -1.18
SCN1A-218ENST00000640036 TRIM41Q8WV44 630 aa7.61□□□□□ -1.19
SCN1A-218ENST00000640036 AEBP2Q6ZN18 517 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-218ENST00000640036 TRHP20396 242 aaPredicted RBP7.59□□□□□ -1.2
SCN1A-218ENST00000640036 BCANQ96GW7 911 aa7.59□□□□□ -1.2
SCN1A-218ENST00000640036 PLPPR3Q6T4P5 718 aa7.55□□□□□ -1.2
SCN1A-218ENST00000640036 CCER1Q8TC90 406 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-218ENST00000640036 SLC4A1APQ9BWU0 796 aaKnown RBP7.49□□□□□ -1.21
SCN1A-218ENST00000640036 YTHDC1Q96MU7 727 aaKnown RBP7.48□□□□□ -1.21
SCN1A-218ENST00000640036 MYT1Q01538 1121 aa7.47□□□□□ -1.21
SCN1A-218ENST00000640036 ERCC6Q03468 1493 aa7.45□□□□□ -1.22
SCN1A-218ENST00000640036 STAG3Q9UJ98 1225 aa7.44□□□□□ -1.22
SCN1A-218ENST00000640036 CHMP7Q8WUX9 453 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-218ENST00000640036 ARID4BQ4LE39 1312 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-218ENST00000640036 CDK11AQ9UQ88 783 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-218ENST00000640036 RB1CC1Q8TDY2 1594 aa7.36□□□□□ -1.23
SCN1A-218ENST00000640036 ITGAEP38570 1179 aa7.32□□□□□ -1.24
SCN1A-218ENST00000640036 POLR3GLQ9BT43 218 aa7.32□□□□□ -1.24
SCN1A-218ENST00000640036 C14orf37Q86TY3 774 aa7.3□□□□□ -1.24
SCN1A-218ENST00000640036 SCAF1Q9H7N4 1312 aaKnown RBP7.3□□□□□ -1.24
SCN1A-218ENST00000640036 SLC24A1O60721 1099 aa7.29□□□□□ -1.24
SCN1A-218ENST00000640036 ERICH6Q7L0X2 663 aa7.29□□□□□ -1.24
SCN1A-218ENST00000640036 SCRIBQ14160 1630 aa7.28□□□□□ -1.24
SCN1A-218ENST00000640036 HAP1P54257 671 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-218ENST00000640036 A0A0G2JS52 829 aa7.25□□□□□ -1.25
SCN1A-218ENST00000640036 CHGAP10645 457 aaKnown RBP7.25□□□□□ -1.25
SCN1A-218ENST00000640036 ARID3CA6NKF2 412 aa7.24□□□□□ -1.25
SCN1A-218ENST00000640036 ZNF777Q9ULD5 760 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-218ENST00000640036 TRIM52Q96A61 297 aa7.23□□□□□ -1.25
SCN1A-218ENST00000640036 NEFMP07197 916 aa7.22□□□□□ -1.25
SCN1A-218ENST00000640036 FAM50AQ14320 339 aaKnown RBP7.22□□□□□ -1.25
SCN1A-218ENST00000640036 NPM2Q86SE8 214 aaKnown RBP7.21□□□□□ -1.26
SCN1A-218ENST00000640036 PCGF6Q9BYE7 350 aa7.2□□□□□ -1.26
SCN1A-218ENST00000640036 DCAF8L1A6NGE4 600 aa7.19□□□□□ -1.26
SCN1A-218ENST00000640036 CCDC180Q9P1Z9 1646 aa7.18□□□□□ -1.26
SCN1A-218ENST00000640036 KCNH8Q96L42 1107 aa7.18□□□□□ -1.26
SCN1A-218ENST00000640036 PPP1R15AO75807 674 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-218ENST00000640036 P3H3Q8IVL6 736 aa7.17□□□□□ -1.26
SCN1A-218ENST00000640036 NACADO15069 1562 aa7.15□□□□□ -1.26
SCN1A-218ENST00000640036 FOXD1Q16676 465 aa7.13□□□□□ -1.27
SCN1A-218ENST00000640036 TSPY4P0CV99 314 aa7.12□□□□□ -1.27
SCN1A-218ENST00000640036 TSPY10P0CW01 314 aa7.12□□□□□ -1.27
SCN1A-218ENST00000640036 SENP3Q9H4L4 574 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-218ENST00000640036 OSCARQ8IYS5 282 aa7.1□□□□□ -1.27
SCN1A-218ENST00000640036 PLEKHD1A6NEE1 506 aa7.1□□□□□ -1.27
SCN1A-218ENST00000640036 CNGB1Q14028 1251 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-218ENST00000640036 PHF23Q9BUL5 403 aaPredicted RBP7.1□□□□□ -1.27
SCN1A-218ENST00000640036 HDGFP51858 240 aaKnown RBP7.09□□□□□ -1.28
SCN1A-218ENST00000640036 CYB5RLQ6IPT4 315 aa7.09□□□□□ -1.28
SCN1A-218ENST00000640036 ZNF326Q5BKZ1 582 aaKnown RBP7.08□□□□□ -1.28
SCN1A-218ENST00000640036 ZBTB47Q9UFB7 747 aaPredicted RBP7.08□□□□□ -1.28
SCN1A-218ENST00000640036 PLEKHG5O94827 1062 aa7.08□□□□□ -1.28
SCN1A-218ENST00000640036 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.07□□□□□ -1.281e-6■■■□□ 16.7
SCN1A-218ENST00000640036 MLECQ14165 292 aa7.07□□□□□ -1.28
SCN1A-218ENST00000640036 PDS5BQ9NTI5 1447 aa7.06□□□□□ -1.28
SCN1A-218ENST00000640036 CECR2Q9BXF3 1484 aa7.05□□□□□ -1.28
SCN1A-218ENST00000640036 BAZ1BQ9UIG0 1483 aaKnown RBP7.05□□□□□ -1.28
SCN1A-218ENST00000640036 ZBTB7CA1YPR0 619 aa7.04□□□□□ -1.28
SCN1A-218ENST00000640036 LMOD2Q6P5Q4 547 aa7.04□□□□□ -1.28
SCN1A-218ENST00000640036 CENPBP07199 599 aaPredicted RBP7.04□□□□□ -1.28
SCN1A-218ENST00000640036 NPHP1O15259 732 aa7.03□□□□□ -1.28
SCN1A-218ENST00000640036 DAXXQ9UER7 740 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-218ENST00000640036 PPARGC1BQ86YN6 1023 aaKnown RBP7.03□□□□□ -1.28
SCN1A-218ENST00000640036 NEFLP07196 543 aa7.01□□□□□ -1.29
SCN1A-218ENST00000640036 MEX3CQ5U5Q3 659 aaKnown RBP6.98□□□□□ -1.29
SCN1A-218ENST00000640036 CCDC9Q9Y3X0 531 aaKnown RBP6.98□□□□□ -1.29
SCN1A-218ENST00000640036 ZEB1P37275 1124 aaPredicted RBP6.95□□□□□ -1.3
SCN1A-218ENST00000640036 ARXQ96QS3 562 aa6.95□□□□□ -1.3
SCN1A-218ENST00000640036 CSRNP3Q8WYN3 585 aa6.95□□□□□ -1.3
SCN1A-218ENST00000640036 EID1Q9Y6B2 187 aa6.93□□□□□ -1.3
SCN1A-218ENST00000640036 CARMIL2Q6F5E8 1435 aa6.93□□□□□ -1.3
SCN1A-218ENST00000640036 MTUS2Q5JR59 1369 aa6.92□□□□□ -1.3
SCN1A-218ENST00000640036 CLSPNQ9HAW4 1339 aa6.92□□□□□ -1.3
SCN1A-218ENST00000640036 NEUROD1Q13562 356 aa6.91□□□□□ -1.3
SCN1A-218ENST00000640036 SF3B2Q13435 895 aaKnown RBP6.91□□□□□ -1.3
SCN1A-218ENST00000640036 TMX4Q9H1E5 349 aaPredicted RBP6.91□□□□□ -1.3
SCN1A-218ENST00000640036 FAM69CQ0P6D2 419 aa6.89□□□□□ -1.31
SCN1A-218ENST00000640036 KANK1Q14678 1352 aa6.88□□□□□ -1.31
SCN1A-218ENST00000640036 CFDP1Q9UEE9 299 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-218ENST00000640036 POGKQ9P215 609 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms