RNA–Protein interactions for RNA: ENST00000552085.1

SNRPF-204, Transcript of small nuclear ribonucleoprotein polypeptide F, humanhuman

TSL 3 BASIC

Gene SNRPF, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPF-204ENST00000552085 NISCHQ9Y2I1 1504 aa32.63■■■□□ 2.81
SNRPF-204ENST00000552085 ABCC9O60706 1549 aa30.74■■■□□ 2.51
SNRPF-204ENST00000552085 CCDC180Q9P1Z9 1646 aa29.81■■■□□ 2.36
SNRPF-204ENST00000552085 DNAJC5BQ9UF47 199 aa29.74■■■□□ 2.35
SNRPF-204ENST00000552085 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
SNRPF-204ENST00000552085 PABPN1Q86U42 306 aaKnown RBP eCLIP28.42■■■□□ 2.14
SNRPF-204ENST00000552085 NACADO15069 1562 aa28.39■■■□□ 2.14
SNRPF-204ENST00000552085 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
SNRPF-204ENST00000552085 DNAJC5Q9H3Z4 198 aa28.09■■■□□ 2.09
SNRPF-204ENST00000552085 BICRAQ9NZM4 1560 aa28.04■■■□□ 2.08
SNRPF-204ENST00000552085 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
SNRPF-204ENST00000552085 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
SNRPF-204ENST00000552085 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
SNRPF-204ENST00000552085 MYO15BQ96JP2 1530 aa27.64■■■□□ 2.02
SNRPF-204ENST00000552085 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
SNRPF-204ENST00000552085 EIF4G1Q04637 1599 aaKnown RBP27.43■■□□□ 1.98
SNRPF-204ENST00000552085 SCRIBQ14160 1630 aa27.05■■□□□ 1.92
SNRPF-204ENST00000552085 CUX2O14529 1486 aa26.94■■□□□ 1.9
SNRPF-204ENST00000552085 DCAF1Q9Y4B6 1507 aa26.9■■□□□ 1.9
SNRPF-204ENST00000552085 ZCCHC6Q5VYS8 1495 aaKnown RBP26.81■■□□□ 1.88
SNRPF-204ENST00000552085 ERCC6Q03468 1493 aa26.62■■□□□ 1.85
SNRPF-204ENST00000552085 TRIM41Q8WV44 630 aa26.41■■□□□ 1.82
SNRPF-204ENST00000552085 NCAPD3P42695 1498 aa26.18■■□□□ 1.78
SNRPF-204ENST00000552085 NESP48681 1621 aa26.12■■□□□ 1.77
SNRPF-204ENST00000552085 THOC2Q8NI27 1593 aaKnown RBP26.11■■□□□ 1.77
SNRPF-204ENST00000552085 ATAD2BQ9ULI0 1458 aa25.96■■□□□ 1.75
SNRPF-204ENST00000552085 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
SNRPF-204ENST00000552085 SMARCA2P51531 1590 aa25.86■■□□□ 1.73
SNRPF-204ENST00000552085 KIF21AQ7Z4S6 1674 aa25.82■■□□□ 1.72
SNRPF-204ENST00000552085 LAMC3Q9Y6N6 1575 aa25.8■■□□□ 1.72
SNRPF-204ENST00000552085 SMARCA4P51532 1647 aa25.7■■□□□ 1.71
SNRPF-204ENST00000552085 BAZ1BQ9UIG0 1483 aaKnown RBP25.66■■□□□ 1.7
SNRPF-204ENST00000552085 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
SNRPF-204ENST00000552085 PDS5BQ9NTI5 1447 aa25.64■■□□□ 1.7
SNRPF-204ENST00000552085 OSCARQ8IYS5 282 aa25.5■■□□□ 1.67
SNRPF-204ENST00000552085 MRC2Q9UBG0 1479 aa25.5■■□□□ 1.67
SNRPF-204ENST00000552085 WDR62O43379 1518 aa25.48■■□□□ 1.67
SNRPF-204ENST00000552085 PEG3Q9GZU2 1588 aa25.46■■□□□ 1.67
SNRPF-204ENST00000552085 RIMBP3CA6NJZ7 1639 aa25.36■■□□□ 1.65
SNRPF-204ENST00000552085 RIMBP3BA6NNM3 1639 aa25.36■■□□□ 1.65
SNRPF-204ENST00000552085 RIMBP3Q9UFD9 1639 aa25.36■■□□□ 1.65
SNRPF-204ENST00000552085 CADPSQ9ULU8 1353 aa25.32■■□□□ 1.64
SNRPF-204ENST00000552085 CEP164Q9UPV0 1460 aa25.19■■□□□ 1.62
SNRPF-204ENST00000552085 AEBP2Q6ZN18 517 aaPredicted RBP25.14■■□□□ 1.62
SNRPF-204ENST00000552085 ARHGEF11O15085 1522 aa25.13■■□□□ 1.61
SNRPF-204ENST00000552085 MROH2BQ7Z745 1585 aa25.13■■□□□ 1.61
SNRPF-204ENST00000552085 FANCD2Q9BXW9 1451 aa25.06■■□□□ 1.6
SNRPF-204ENST00000552085 TRHP20396 242 aaPredicted RBP25.04■■□□□ 1.6
SNRPF-204ENST00000552085 CYB5RLQ6IPT4 315 aa24.97■■□□□ 1.59
SNRPF-204ENST00000552085 URB2Q14146 1524 aaKnown RBP24.93■■□□□ 1.58
SNRPF-204ENST00000552085 CFTRP13569 1480 aa24.83■■□□□ 1.56
SNRPF-204ENST00000552085 WIZO95785 1651 aa24.82■■□□□ 1.56
SNRPF-204ENST00000552085 ARAP1Q96P48 1450 aa24.81■■□□□ 1.56
SNRPF-204ENST00000552085 ZNF608Q9ULD9 1512 aaPredicted RBP24.78■■□□□ 1.56
SNRPF-204ENST00000552085 IFT140Q96RY7 1462 aa24.71■■□□□ 1.55
SNRPF-204ENST00000552085 CHD1O14646 1710 aa24.7■■□□□ 1.54
SNRPF-204ENST00000552085 PRDM2Q13029 1718 aa24.64■■□□□ 1.53
SNRPF-204ENST00000552085 EIF4G3O43432 1585 aaKnown RBP24.63■■□□□ 1.53
SNRPF-204ENST00000552085 RSF1Q96T23 1441 aaPredicted RBP24.63■■□□□ 1.53
SNRPF-204ENST00000552085 TOPBP1Q92547 1522 aa24.48■■□□□ 1.51
SNRPF-204ENST00000552085 FBLN2P98095 1184 aa24.44■■□□□ 1.5
SNRPF-204ENST00000552085 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.52e-6■■□□□ 11.9
SNRPF-204ENST00000552085 TOP2AP11388 1531 aaKnown RBP24.4■■□□□ 1.5
SNRPF-204ENST00000552085 TARBP1Q13395 1621 aaKnown RBP24.36■■□□□ 1.49
SNRPF-204ENST00000552085 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
SNRPF-204ENST00000552085 CLASP1Q7Z460 1538 aa24.33■■□□□ 1.49
SNRPF-204ENST00000552085 DNMBPQ6XZF7 1577 aa24.31■■□□□ 1.48
SNRPF-204ENST00000552085 SYNJ1O43426 1573 aa24.23■■□□□ 1.47
SNRPF-204ENST00000552085 ILDR1Q86SU0 546 aaPredicted RBP24.16■■□□□ 1.46
SNRPF-204ENST00000552085 POLA1P09884 1462 aaPredicted RBP24.15■■□□□ 1.46
SNRPF-204ENST00000552085 SNAPC4Q5SXM2 1469 aa24.15■■□□□ 1.46
SNRPF-204ENST00000552085 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
SNRPF-204ENST00000552085 CCDC88BA6NC98 1476 aa24.12■■□□□ 1.45
SNRPF-204ENST00000552085 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
SNRPF-204ENST00000552085 TDRD9Q8NDG6 1382 aaKnown RBP24.09■■□□□ 1.45
SNRPF-204ENST00000552085 RAD54L2Q9Y4B4 1467 aa24.07■■□□□ 1.44
SNRPF-204ENST00000552085 WDR97A6NE52 1622 aa24.06■■□□□ 1.44
SNRPF-204ENST00000552085 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
SNRPF-204ENST00000552085 SOGA1O94964 1423 aa24.01■■□□□ 1.43
SNRPF-204ENST00000552085 SYNJ2O15056 1496 aa23.98■■□□□ 1.43
SNRPF-204ENST00000552085 KIF13AQ9H1H9 1805 aa23.98■■□□□ 1.43
SNRPF-204ENST00000552085 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
SNRPF-204ENST00000552085 ERCC6L2Q5T890 1561 aa23.87■■□□□ 1.41
SNRPF-204ENST00000552085 FGD5Q6ZNL6 1462 aa23.86■■□□□ 1.41
SNRPF-204ENST00000552085 PBRM1Q86U86 1689 aa23.86■■□□□ 1.41
SNRPF-204ENST00000552085 KDM4FA0A1W2PPD8 638 aa23.81■■□□□ 1.4
SNRPF-204ENST00000552085 CEP170Q5SW79 1584 aa23.73■■□□□ 1.39
SNRPF-204ENST00000552085 CUX1P39880 1505 aa23.68■■□□□ 1.38
SNRPF-204ENST00000552085 SHROOM2Q13796 1616 aa23.66■■□□□ 1.38
SNRPF-204ENST00000552085 KDM6BO15054 1643 aa23.64■■□□□ 1.38
SNRPF-204ENST00000552085 GRIN2AQ12879 1464 aa23.63■■□□□ 1.37
SNRPF-204ENST00000552085 ABCA5Q8WWZ7 1642 aa23.62■■□□□ 1.37
SNRPF-204ENST00000552085 FAM69CQ0P6D2 419 aa23.62■■□□□ 1.37
SNRPF-204ENST00000552085 ABCC10Q5T3U5 1492 aa23.62■■□□□ 1.37
SNRPF-204ENST00000552085 NUP160Q12769 1436 aa23.59■■□□□ 1.37
SNRPF-204ENST00000552085 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
SNRPF-204ENST00000552085 DIP2BQ9P265 1576 aa23.56■■□□□ 1.36
SNRPF-204ENST00000552085 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
SNRPF-204ENST00000552085 MAPKBP1O60336 1514 aa23.51■■□□□ 1.35
SNRPF-204ENST00000552085 ADAMTS12P58397 1594 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms