RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PELP1Q8IZL8 1130 aaKnown RBP7.72□□□□□ -1.17
SCN1A-202ENST00000375405 DCAF8L2P0C7V8 631 aa7.71□□□□□ -1.18
SCN1A-202ENST00000375405 MYT1Q01538 1121 aa7.53□□□□□ -1.2
SCN1A-202ENST00000375405 ERICH6Q7L0X2 663 aa7.52□□□□□ -1.21
SCN1A-202ENST00000375405 EHMT2Q96KQ7 1210 aa7.35□□□□□ -1.23
SCN1A-202ENST00000375405 CCER1Q8TC90 406 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-202ENST00000375405 FAM9AQ8IZU1 332 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-202ENST00000375405 DAXXQ9UER7 740 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-202ENST00000375405 CHIC1Q5VXU3 224 aa7.13□□□□□ -1.27
SCN1A-202ENST00000375405 APLP2Q06481 763 aa7.12□□□□□ -1.27
SCN1A-202ENST00000375405 MYT1LQ9UL68 1186 aa7.09□□□□□ -1.27
SCN1A-202ENST00000375405 TTBK1Q5TCY1 1321 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-202ENST00000375405 ATP1B4Q9UN42 357 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-202ENST00000375405 SLC4A1APQ9BWU0 796 aaKnown RBP7.02□□□□□ -1.29
SCN1A-202ENST00000375405 YTHDC1Q96MU7 727 aaKnown RBP7.02□□□□□ -1.29
SCN1A-202ENST00000375405 SUPT5HO00267 1087 aaKnown RBP6.98□□□□□ -1.29
SCN1A-202ENST00000375405 RANGAP1P46060 587 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-202ENST00000375405 SLC24A1O60721 1099 aa6.97□□□□□ -1.29
SCN1A-202ENST00000375405 NEFLP07196 543 aa6.96□□□□□ -1.3
SCN1A-202ENST00000375405 POLR3GLQ9BT43 218 aa6.93□□□□□ -1.3
SCN1A-202ENST00000375405 BCL11AQ9H165 835 aa6.93□□□□□ -1.3
SCN1A-202ENST00000375405 CNGB1Q14028 1251 aaPredicted RBP6.92□□□□□ -1.3
SCN1A-202ENST00000375405 NCBP3Q53F19 620 aaKnown RBP6.9□□□□□ -1.3
SCN1A-202ENST00000375405 ZNF316A6NFI3 1004 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-202ENST00000375405 CLSPNQ9HAW4 1339 aa6.89□□□□□ -1.31
SCN1A-202ENST00000375405 SHROOM4Q9ULL8 1493 aa6.84□□□□□ -1.31
SCN1A-202ENST00000375405 TULP1O00294 542 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-202ENST00000375405 CDK11BP21127 795 aaKnown RBP6.78□□□□□ -1.32
SCN1A-202ENST00000375405 CDK11AQ9UQ88 783 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-202ENST00000375405 CENPBP07199 599 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-202ENST00000375405 ZBTB47Q9UFB7 747 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-202ENST00000375405 PCGF6Q9BYE7 350 aa6.76□□□□□ -1.33
SCN1A-202ENST00000375405 RTL5Q5HYW3 569 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-202ENST00000375405 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-202ENST00000375405 HNRNPUL2Q1KMD3 747 aaKnown RBP6.71□□□□□ -1.34
SCN1A-202ENST00000375405 A0A0G2JS52 829 aa6.7□□□□□ -1.34
SCN1A-202ENST00000375405 BCANQ96GW7 911 aa6.7□□□□□ -1.34
SCN1A-202ENST00000375405 KRI1Q8N9T8 703 aaKnown RBP6.66□□□□□ -1.34
SCN1A-202ENST00000375405 PLPPR3Q6T4P5 718 aa6.66□□□□□ -1.34
SCN1A-202ENST00000375405 PRM3Q9NNZ6 103 aa6.65□□□□□ -1.34
SCN1A-202ENST00000375405 SCAF1Q9H7N4 1312 aaKnown RBP6.58□□□□□ -1.36
SCN1A-202ENST00000375405 PPARGC1BQ86YN6 1023 aaKnown RBP6.57□□□□□ -1.36
SCN1A-202ENST00000375405 EIF5BO60841 1220 aaKnown RBP6.55□□□□□ -1.36
SCN1A-202ENST00000375405 CANXP27824 592 aaKnown RBP6.54□□□□□ -1.36
SCN1A-202ENST00000375405 ITGAEP38570 1179 aa6.53□□□□□ -1.36
SCN1A-202ENST00000375405 ANP32BQ92688 251 aaKnown RBP6.53□□□□□ -1.36
SCN1A-202ENST00000375405 CLSTN1O94985 981 aa6.52□□□□□ -1.37
SCN1A-202ENST00000375405 NEFMP07197 916 aa6.51□□□□□ -1.37
SCN1A-202ENST00000375405 HSP90AA1P07900 732 aaKnown RBP6.5□□□□□ -1.37
SCN1A-202ENST00000375405 PLEKHG5O94827 1062 aa6.49□□□□□ -1.37
SCN1A-202ENST00000375405 FBXO3Q9UK99 471 aa6.49□□□□□ -1.37
SCN1A-202ENST00000375405 UBTFP17480 764 aaKnown RBP6.47□□□□□ -1.37
SCN1A-202ENST00000375405 NPM2Q86SE8 214 aaKnown RBP6.45□□□□□ -1.38
SCN1A-202ENST00000375405 ARXQ96QS3 562 aa6.44□□□□□ -1.38
SCN1A-202ENST00000375405 ZEB1P37275 1124 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-202ENST00000375405 NPHP1O15259 732 aa6.42□□□□□ -1.38
SCN1A-202ENST00000375405 TAOK2Q9UL54 1235 aa6.42□□□□□ -1.38
SCN1A-202ENST00000375405 AMER1Q5JTC6 1135 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-202ENST00000375405 GLIPR1L2Q4G1C9 344 aa6.4□□□□□ -1.39
SCN1A-202ENST00000375405 ESF1Q9H501 851 aaKnown RBP6.39□□□□□ -1.39
SCN1A-202ENST00000375405 ZBTB7CA1YPR0 619 aa6.39□□□□□ -1.39
SCN1A-202ENST00000375405 TRIM44Q96DX7 344 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-202ENST00000375405 SENP3Q9H4L4 574 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-202ENST00000375405 FKBP8Q14318 412 aa6.37□□□□□ -1.39
SCN1A-202ENST00000375405 ANO8Q9HCE9 1232 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-202ENST00000375405 TPRNQ4KMQ1 711 aa6.36□□□□□ -1.39
SCN1A-202ENST00000375405 ZNF326Q5BKZ1 582 aaKnown RBP6.36□□□□□ -1.39
SCN1A-202ENST00000375405 PDE4CQ08493 712 aa6.35□□□□□ -1.39
SCN1A-202ENST00000375405 DIEXFQ68CQ4 756 aaKnown RBP6.34□□□□□ -1.39
SCN1A-202ENST00000375405 HAP1P54257 671 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-202ENST00000375405 HRCP23327 699 aa6.33□□□□□ -1.4
SCN1A-202ENST00000375405 STAG3Q9UJ98 1225 aa6.33□□□□□ -1.4
SCN1A-202ENST00000375405 TRIM41Q8WV44 630 aa6.32□□□□□ -1.4
SCN1A-202ENST00000375405 ISY1Q9ULR0 285 aaKnown RBP6.32□□□□□ -1.4
SCN1A-202ENST00000375405 TRIM26Q12899 539 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-202ENST00000375405 CNKSR2Q8WXI2 1034 aa6.3□□□□□ -1.4
SCN1A-202ENST00000375405 ZRSR1Q15695 479 aaKnown RBP6.3□□□□□ -1.4
SCN1A-202ENST00000375405 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-202ENST00000375405 C14orf37Q86TY3 774 aa6.29□□□□□ -1.4
SCN1A-202ENST00000375405 TNNT2P45379 298 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-202ENST00000375405 TRIM52Q96A61 297 aa6.27□□□□□ -1.4
SCN1A-202ENST00000375405 GOLGA2Q08379 1002 aa6.27□□□□□ -1.41
SCN1A-202ENST00000375405 NBR1Q14596 966 aa6.26□□□□□ -1.41
SCN1A-202ENST00000375405 NOC3LQ8WTT2 800 aaKnown RBP6.26□□□□□ -1.41
SCN1A-202ENST00000375405 UPF2Q9HAU5 1272 aaKnown RBP6.25□□□□□ -1.41
SCN1A-202ENST00000375405 GTF3C3Q9Y5Q9 886 aa6.25□□□□□ -1.41
SCN1A-202ENST00000375405 WWC1Q8IX03 1113 aa6.24□□□□□ -1.41
SCN1A-202ENST00000375405 DNTTIP2Q5QJE6 756 aaKnown RBP6.23□□□□□ -1.41
SCN1A-202ENST00000375405 ANP32AP39687 249 aaKnown RBP6.23□□□□□ -1.41
SCN1A-202ENST00000375405 CHGAP10645 457 aaKnown RBP6.23□□□□□ -1.41
SCN1A-202ENST00000375405 VSIG10Q8N0Z9 540 aa6.23□□□□□ -1.41
SCN1A-202ENST00000375405 AK7Q96M32 723 aa6.22□□□□□ -1.41
SCN1A-202ENST00000375405 LOC105371045A0A1W2PR82 267 aa6.22□□□□□ -1.41
SCN1A-202ENST00000375405 WDR70Q9NW82 654 aa6.21□□□□□ -1.42
SCN1A-202ENST00000375405 FBLN2P98095 1184 aa6.2□□□□□ -1.42
SCN1A-202ENST00000375405 A0A0U1RQG5 324 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-202ENST00000375405 NCLP19338 710 aaKnown RBP6.2□□□□□ -1.42
SCN1A-202ENST00000375405 CALRP27797 417 aaKnown RBP6.19□□□□□ -1.42
SCN1A-202ENST00000375405 NAP1L2Q9ULW6 460 aaPredicted RBP6.19□□□□□ -1.42
SCN1A-202ENST00000375405 PTMAP06454 111 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms