RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
SCN1A-216ENST00000637968 MYT1Q01538 1121 aa10.21□□□□□ -0.77
SCN1A-216ENST00000637968 TTBK1Q5TCY1 1321 aaPredicted RBP9.66□□□□□ -0.86
SCN1A-216ENST00000637968 HRCP23327 699 aa9.4□□□□□ -0.9
SCN1A-216ENST00000637968 ERICH6Q7L0X2 663 aa9.33□□□□□ -0.92
SCN1A-216ENST00000637968 CENPBP07199 599 aaPredicted RBP9.16□□□□□ -0.94
SCN1A-216ENST00000637968 SCAF1Q9H7N4 1312 aaKnown RBP9.09□□□□□ -0.95
SCN1A-216ENST00000637968 PPARGC1BQ86YN6 1023 aaKnown RBP9.08□□□□□ -0.96
SCN1A-216ENST00000637968 BCL11AQ9H165 835 aa9.08□□□□□ -0.96
SCN1A-216ENST00000637968 PRKCSHP14314 528 aaPredicted RBP9.07□□□□□ -0.96
SCN1A-216ENST00000637968 PCGF6Q9BYE7 350 aa9.07□□□□□ -0.96
SCN1A-216ENST00000637968 DCAF8L2P0C7V8 631 aa9.01□□□□□ -0.97
SCN1A-216ENST00000637968 NISCHQ9Y2I1 1504 aa9□□□□□ -0.97
SCN1A-216ENST00000637968 ZEB1P37275 1124 aaPredicted RBP8.96□□□□□ -0.98
SCN1A-216ENST00000637968 ACIN1Q9UKV3 1341 aaKnown RBP8.89□□□□□ -0.99
SCN1A-216ENST00000637968 GTF3C3Q9Y5Q9 886 aa8.89□□□□□ -0.99
SCN1A-216ENST00000637968 SLC24A1O60721 1099 aa8.88□□□□□ -0.99
SCN1A-216ENST00000637968 FAM9AQ8IZU1 332 aaPredicted RBP8.83□□□□□ -1
SCN1A-216ENST00000637968 APLP2Q06481 763 aa8.8□□□□□ -1
SCN1A-216ENST00000637968 ANP32EQ9BTT0 268 aa8.76□□□□□ -1.01
SCN1A-216ENST00000637968 NEUROD1Q13562 356 aa8.72□□□□□ -1.01
SCN1A-216ENST00000637968 EIF5BO60841 1220 aaKnown RBP8.65□□□□□ -1.03
SCN1A-216ENST00000637968 TRIM26Q12899 539 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-216ENST00000637968 YTHDC1Q96MU7 727 aaKnown RBP8.58□□□□□ -1.04
SCN1A-216ENST00000637968 CSRNP3Q8WYN3 585 aa8.56□□□□□ -1.04
SCN1A-216ENST00000637968 CCER1Q8TC90 406 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-216ENST00000637968 DAXXQ9UER7 740 aaPredicted RBP8.53□□□□□ -1.04
SCN1A-216ENST00000637968 DIEXFQ68CQ4 756 aaKnown RBP8.53□□□□□ -1.04
SCN1A-216ENST00000637968 MYT1LQ9UL68 1186 aa8.51□□□□□ -1.05
SCN1A-216ENST00000637968 SUPT5HO00267 1087 aaKnown RBP8.49□□□□□ -1.05
SCN1A-216ENST00000637968 CLSPNQ9HAW4 1339 aa8.46□□□□□ -1.06
SCN1A-216ENST00000637968 GLIPR1L2Q4G1C9 344 aa8.38□□□□□ -1.07
SCN1A-216ENST00000637968 ANO8Q9HCE9 1232 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-216ENST00000637968 DCAF1Q9Y4B6 1507 aa8.37□□□□□ -1.07
SCN1A-216ENST00000637968 UBE2Q2Q8WVN8 375 aa8.36□□□□□ -1.07
SCN1A-216ENST00000637968 ERICH6BQ5W0A0 696 aa8.34□□□□□ -1.07
SCN1A-216ENST00000637968 PODXL2Q9NZ53 605 aa8.34□□□□□ -1.07
SCN1A-216ENST00000637968 NEFLP07196 543 aa8.33□□□□□ -1.08
SCN1A-216ENST00000637968 PKNOX2Q96KN3 472 aa8.32□□□□□ -1.08
SCN1A-216ENST00000637968 TSHZ2Q9NRE2 1034 aa8.31□□□□□ -1.08
SCN1A-216ENST00000637968 RTL5Q5HYW3 569 aaPredicted RBP8.3□□□□□ -1.08
SCN1A-216ENST00000637968 CCDC180Q9P1Z9 1646 aa8.3□□□□□ -1.08
SCN1A-216ENST00000637968 CHIC1Q5VXU3 224 aa8.27□□□□□ -1.09
SCN1A-216ENST00000637968 CCDC136Q96JN2 1154 aa8.27□□□□□ -1.09
SCN1A-216ENST00000637968 DEKP35659 375 aaKnown RBP8.26□□□□□ -1.09
SCN1A-216ENST00000637968 SUPT16HQ9Y5B9 1047 aaKnown RBP8.23□□□□□ -1.09
SCN1A-216ENST00000637968 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-216ENST00000637968 SALL2Q9Y467 1007 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-216ENST00000637968 ZNF316A6NFI3 1004 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-216ENST00000637968 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.22□□□□□ -1.09
SCN1A-216ENST00000637968 BCANQ96GW7 911 aa8.2□□□□□ -1.1
SCN1A-216ENST00000637968 PLEKHG5O94827 1062 aa8.19□□□□□ -1.1
SCN1A-216ENST00000637968 MYO15BQ96JP2 1530 aa8.19□□□□□ -1.1
SCN1A-216ENST00000637968 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-216ENST00000637968 LOC105371045A0A1W2PR82 267 aa8.17□□□□□ -1.1
SCN1A-216ENST00000637968 SHROOM4Q9ULL8 1493 aa8.15□□□□□ -1.1
SCN1A-216ENST00000637968 RBM19Q9Y4C8 960 aaKnown RBP8.15□□□□□ -1.1
SCN1A-216ENST00000637968 RTN4Q9NQC3 1192 aaKnown RBP8.15□□□□□ -1.1
SCN1A-216ENST00000637968 CDK11AQ9UQ88 783 aaPredicted RBP8.14□□□□□ -1.11
SCN1A-216ENST00000637968 MIER1Q8N108 512 aa8.1□□□□□ -1.11
SCN1A-216ENST00000637968 NBR1Q14596 966 aa8.1□□□□□ -1.11
SCN1A-216ENST00000637968 FKBP8Q14318 412 aa8.08□□□□□ -1.12
SCN1A-216ENST00000637968 TRIM41Q8WV44 630 aa8.06□□□□□ -1.12
SCN1A-216ENST00000637968 VSIG10Q8N0Z9 540 aa8.05□□□□□ -1.12
SCN1A-216ENST00000637968 A0A0U1RQG5 324 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-216ENST00000637968 PDE4CQ08493 712 aa8.02□□□□□ -1.13
SCN1A-216ENST00000637968 FANCIQ9NVI1 1328 aa8□□□□□ -1.13
SCN1A-216ENST00000637968 RSPH6AQ9H0K4 717 aa8□□□□□ -1.13
SCN1A-216ENST00000637968 EHMT2Q96KQ7 1210 aa7.99□□□□□ -1.13
SCN1A-216ENST00000637968 ANP32AP39687 249 aaKnown RBP7.98□□□□□ -1.13
SCN1A-216ENST00000637968 NOP58Q9Y2X3 529 aaKnown RBP7.97□□□□□ -1.13
SCN1A-216ENST00000637968 ABCC9O60706 1549 aa7.96□□□□□ -1.13
SCN1A-216ENST00000637968 ITGAEP38570 1179 aa7.96□□□□□ -1.14
SCN1A-216ENST00000637968 IL27Q8NEV9 243 aa7.95□□□□□ -1.14
SCN1A-216ENST00000637968 PDIA4P13667 645 aaKnown RBP7.94□□□□□ -1.14
SCN1A-216ENST00000637968 ZBTB47Q9UFB7 747 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-216ENST00000637968 ZMYND15Q9H091 742 aa7.93□□□□□ -1.14
SCN1A-216ENST00000637968 TIMELESSQ9UNS1 1208 aa7.93□□□□□ -1.14
SCN1A-216ENST00000637968 NEFMP07197 916 aa7.92□□□□□ -1.14
SCN1A-216ENST00000637968 MSH5O43196 834 aa7.91□□□□□ -1.14
SCN1A-216ENST00000637968 HSP90AA2PQ14568 343 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-216ENST00000637968 ZNF326Q5BKZ1 582 aaKnown RBP7.87□□□□□ -1.15
SCN1A-216ENST00000637968 HSP90AA1P07900 732 aaKnown RBP7.85□□□□□ -1.15
SCN1A-216ENST00000637968 NAP1L5Q96NT1 182 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-216ENST00000637968 NCLP19338 710 aaKnown RBP7.82□□□□□ -1.16
SCN1A-216ENST00000637968 RBM10P98175 930 aaKnown RBP7.82□□□□□ -1.16
SCN1A-216ENST00000637968 PPM1GO15355 546 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-216ENST00000637968 FGD1P98174 961 aa7.82□□□□□ -1.16
SCN1A-216ENST00000637968 TAF7LQ5H9L4 462 aa7.82□□□□□ -1.16
SCN1A-216ENST00000637968 USP35Q9P2H5 1018 aa7.8□□□□□ -1.16
SCN1A-216ENST00000637968 BCL11BQ9C0K0 894 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-216ENST00000637968 PABPN1Q86U42 306 aaKnown RBP eCLIP7.79□□□□□ -1.16
SCN1A-216ENST00000637968 NCBP3Q53F19 620 aaKnown RBP7.78□□□□□ -1.16
SCN1A-216ENST00000637968 RRP9O43818 475 aaKnown RBP7.77□□□□□ -1.17
SCN1A-216ENST00000637968 ARXQ96QS3 562 aa7.75□□□□□ -1.17
SCN1A-216ENST00000637968 AAMPQ13685 434 aa7.75□□□□□ -1.17
SCN1A-216ENST00000637968 TNNT2P45379 298 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-216ENST00000637968 CNGB1Q14028 1251 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-216ENST00000637968 NPM2Q86SE8 214 aaKnown RBP7.75□□□□□ -1.17
SCN1A-216ENST00000637968 IPO9Q96P70 1041 aaKnown RBP7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms