RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CHIC1Q5VXU3 224 aa15.33■□□□□ 0.04
VPS13A-207ENST00000419472 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
VPS13A-207ENST00000419472 PHF23Q9BUL5 403 aaPredicted RBP13.74□□□□□ -0.21
VPS13A-207ENST00000419472 PLPPR3Q6T4P5 718 aa12.81□□□□□ -0.36
VPS13A-207ENST00000419472 EHMT2Q96KQ7 1210 aa12.75□□□□□ -0.37
VPS13A-207ENST00000419472 KCNA4P22459 653 aa12.39□□□□□ -0.43
VPS13A-207ENST00000419472 SENP3Q9H4L4 574 aaPredicted RBP12.31□□□□□ -0.44
VPS13A-207ENST00000419472 ADRA2BP18089 450 aa12.23□□□□□ -0.45
VPS13A-207ENST00000419472 CSRNP3Q8WYN3 585 aa12.1□□□□□ -0.47
VPS13A-207ENST00000419472 SLC24A1O60721 1099 aa11.93□□□□□ -0.5
VPS13A-207ENST00000419472 PPP6R1Q9UPN7 881 aa11.88□□□□□ -0.51
VPS13A-207ENST00000419472 SLC4A1APQ9BWU0 796 aaKnown RBP11.85□□□□□ -0.51
VPS13A-207ENST00000419472 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
VPS13A-207ENST00000419472 ZBTB22O15209 634 aa11.48□□□□□ -0.57
VPS13A-207ENST00000419472 PPP4R3CPQ6ZMV5 832 aa11.48□□□□□ -0.57
VPS13A-207ENST00000419472 FOXD1Q16676 465 aa11.48□□□□□ -0.57
VPS13A-207ENST00000419472 AMER1Q5JTC6 1135 aaPredicted RBP11.38□□□□□ -0.59
VPS13A-207ENST00000419472 NPM3O75607 178 aaKnown RBP11.33□□□□□ -0.6
VPS13A-207ENST00000419472 NCBP3Q53F19 620 aaKnown RBP11.28□□□□□ -0.6
VPS13A-207ENST00000419472 PIAS4Q8N2W9 510 aaPredicted RBP11.03□□□□□ -0.64
VPS13A-207ENST00000419472 FOXD4L1Q9NU39 408 aa10.98□□□□□ -0.65
VPS13A-207ENST00000419472 CNKSR2Q8WXI2 1034 aa10.87□□□□□ -0.67
VPS13A-207ENST00000419472 FKBP8Q14318 412 aa10.86□□□□□ -0.67
VPS13A-207ENST00000419472 PRKCSHP14314 528 aaPredicted RBP10.67□□□□□ -0.7
VPS13A-207ENST00000419472 DNAJC5BQ9UF47 199 aa10.6□□□□□ -0.71
VPS13A-207ENST00000419472 SCAF1Q9H7N4 1312 aaKnown RBP10.57□□□□□ -0.72
VPS13A-207ENST00000419472 MAPK8IP2Q13387 824 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-207ENST00000419472 PLCB2Q00722 1185 aa10.54□□□□□ -0.72
VPS13A-207ENST00000419472 SLC4A2P04920 1241 aa10.51□□□□□ -0.73
VPS13A-207ENST00000419472 HAP1P54257 671 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-207ENST00000419472 RNF216Q9NWF9 866 aaPredicted RBP10.43□□□□□ -0.74
VPS13A-207ENST00000419472 TAOK2Q9UL54 1235 aa10.42□□□□□ -0.74
VPS13A-207ENST00000419472 BCANQ96GW7 911 aa10.38□□□□□ -0.75
VPS13A-207ENST00000419472 ATXN8OSP0DMR3 200 aa10.38□□□□□ -0.75
VPS13A-207ENST00000419472 MYCNP04198 464 aaPredicted RBP10.32□□□□□ -0.76
VPS13A-207ENST00000419472 TPRNQ4KMQ1 711 aa10.29□□□□□ -0.76
VPS13A-207ENST00000419472 DCAF8L2P0C7V8 631 aa10.23□□□□□ -0.77
VPS13A-207ENST00000419472 ATF5Q9Y2D1 282 aaPredicted RBP10.23□□□□□ -0.77
VPS13A-207ENST00000419472 HOXD11P31277 338 aaPredicted RBP10.15□□□□□ -0.78
VPS13A-207ENST00000419472 VSIG10Q8N0Z9 540 aa10.15□□□□□ -0.78
VPS13A-207ENST00000419472 KDM2AQ9Y2K7 1162 aa10.15□□□□□ -0.78
VPS13A-207ENST00000419472 FBLN2P98095 1184 aa10.12□□□□□ -0.79
VPS13A-207ENST00000419472 TIMELESSQ9UNS1 1208 aa10.12□□□□□ -0.79
VPS13A-207ENST00000419472 PKD2Q13563 968 aa10.03□□□□□ -0.8
VPS13A-207ENST00000419472 TULP1O00294 542 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-207ENST00000419472 MSH5O43196 834 aa10.01□□□□□ -0.81
VPS13A-207ENST00000419472 IFNLR1Q8IU57 520 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-207ENST00000419472 DMRT2Q9Y5R5 561 aa10.01□□□□□ -0.81
VPS13A-207ENST00000419472 FBXO3Q9UK99 471 aa10.01□□□□□ -0.81
VPS13A-207ENST00000419472 VASPP50552 380 aaPredicted RBP9.99□□□□□ -0.81
VPS13A-207ENST00000419472 DAXXQ9UER7 740 aaPredicted RBP9.97□□□□□ -0.81
VPS13A-207ENST00000419472 PAXIP1Q6ZW49 1069 aaPredicted RBP9.94□□□□□ -0.82
VPS13A-207ENST00000419472 CFAP44Q96MT7 982 aa9.92□□□□□ -0.82
VPS13A-207ENST00000419472 NPM1P06748 294 aaKnown RBP eCLIP9.92□□□□□ -0.82
VPS13A-207ENST00000419472 SPDYE4A6NLX3 237 aa9.89□□□□□ -0.83
VPS13A-207ENST00000419472 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.86□□□□□ -0.83
VPS13A-207ENST00000419472 TSHZ2Q9NRE2 1034 aa9.85□□□□□ -0.83
VPS13A-207ENST00000419472 BBXQ8WY36 941 aaPredicted RBP9.85□□□□□ -0.83
VPS13A-207ENST00000419472 GTF3C3Q9Y5Q9 886 aa9.84□□□□□ -0.83
VPS13A-207ENST00000419472 ARXQ96QS3 562 aa9.83□□□□□ -0.84
VPS13A-207ENST00000419472 PROM2Q8N271 834 aa9.82□□□□□ -0.84
VPS13A-207ENST00000419472 MKRN4PQ13434 485 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-207ENST00000419472 ZNF219Q9P2Y4 722 aaPredicted RBP9.76□□□□□ -0.85
VPS13A-207ENST00000419472 SAMD1Q6SPF0 538 aaPredicted RBP9.75□□□□□ -0.85
VPS13A-207ENST00000419472 U3KPZ7 1027 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-207ENST00000419472 ECM2O94769 699 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-207ENST00000419472 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.71□□□□□ -0.85
VPS13A-207ENST00000419472 SPRYD3Q8NCJ5 442 aa9.7□□□□□ -0.86
VPS13A-207ENST00000419472 RGL2O15211 777 aa9.69□□□□□ -0.86
VPS13A-207ENST00000419472 NBR1Q14596 966 aa9.69□□□□□ -0.86
VPS13A-207ENST00000419472 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-207ENST00000419472 HNRNPUL2Q1KMD3 747 aaKnown RBP9.68□□□□□ -0.86
VPS13A-207ENST00000419472 DCAF8L1A6NGE4 600 aa9.66□□□□□ -0.86
VPS13A-207ENST00000419472 TMEM132AQ24JP5 1023 aa9.64□□□□□ -0.87
VPS13A-207ENST00000419472 HOMEZQ8IX15 550 aa9.62□□□□□ -0.87
VPS13A-207ENST00000419472 KLHL34Q8N239 644 aa9.59□□□□□ -0.87
VPS13A-207ENST00000419472 DNAJC5Q9H3Z4 198 aa9.58□□□□□ -0.88
VPS13A-207ENST00000419472 SPOCK2Q92563 424 aa9.58□□□□□ -0.88
VPS13A-207ENST00000419472 CHGAP10645 457 aaKnown RBP9.57□□□□□ -0.88
VPS13A-207ENST00000419472 C14orf37Q86TY3 774 aa9.56□□□□□ -0.88
VPS13A-207ENST00000419472 ERICH6Q7L0X2 663 aa9.49□□□□□ -0.89
VPS13A-207ENST00000419472 NISCHQ9Y2I1 1504 aa9.43□□□□□ -0.9
VPS13A-207ENST00000419472 SUPT5HO00267 1087 aaKnown RBP9.41□□□□□ -0.9
VPS13A-207ENST00000419472 CIZ1Q9ULV3 898 aaPredicted RBP9.38□□□□□ -0.91
VPS13A-207ENST00000419472 PLCD3Q8N3E9 789 aa9.36□□□□□ -0.91
VPS13A-207ENST00000419472 PODXL2Q9NZ53 605 aa9.36□□□□□ -0.91
VPS13A-207ENST00000419472 POLA2Q14181 598 aa9.35□□□□□ -0.91
VPS13A-207ENST00000419472 NKX1-1Q15270 411 aaPredicted RBP9.35□□□□□ -0.91
VPS13A-207ENST00000419472 HS6ST3Q8IZP7 471 aa9.34□□□□□ -0.91
VPS13A-207ENST00000419472 TRHP20396 242 aaPredicted RBP9.31□□□□□ -0.92
VPS13A-207ENST00000419472 RNF25Q96BH1 459 aaPredicted RBP9.31□□□□□ -0.92
VPS13A-207ENST00000419472 MIER1Q8N108 512 aa9.29□□□□□ -0.92
VPS13A-207ENST00000419472 SPINK5Q9NQ38 1064 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-207ENST00000419472 GTPBP6O43824 516 aaPredicted RBP9.27□□□□□ -0.93
VPS13A-207ENST00000419472 APLP2Q06481 763 aa9.27□□□□□ -0.93
VPS13A-207ENST00000419472 BRPF1P55201 1214 aaPredicted RBP9.26□□□□□ -0.93
VPS13A-207ENST00000419472 UBTFP17480 764 aaKnown RBP9.23□□□□□ -0.93
VPS13A-207ENST00000419472 STAG3Q9UJ98 1225 aa9.22□□□□□ -0.93
VPS13A-207ENST00000419472 LMOD2Q6P5Q4 547 aa9.19□□□□□ -0.94
VPS13A-207ENST00000419472 RANGAP1P46060 587 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms