RNA–Protein interactions for RNA: ENST00000551316.1

SNRPF-203, Transcript of small nuclear ribonucleoprotein polypeptide F, humanhuman

TSL 2

Gene SNRPF, Length 787 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPF-203ENST00000551316 NISCHQ9Y2I1 1504 aa35.93■■■■□ 3.34
SNRPF-203ENST00000551316 ABCC9O60706 1549 aa33.99■■■■□ 3.03
SNRPF-203ENST00000551316 DNAJC5BQ9UF47 199 aa32.96■■■□□ 2.87
SNRPF-203ENST00000551316 CCDC180Q9P1Z9 1646 aa32.85■■■□□ 2.85
SNRPF-203ENST00000551316 RB1CC1Q8TDY2 1594 aa31.73■■■□□ 2.67
SNRPF-203ENST00000551316 UNC13AQ9UPW8 1703 aa31.39■■■□□ 2.62
SNRPF-203ENST00000551316 PABPN1Q86U42 306 aaKnown RBP eCLIP31.35■■■□□ 2.61
SNRPF-203ENST00000551316 NACADO15069 1562 aa31.19■■■□□ 2.58
SNRPF-203ENST00000551316 BICRAQ9NZM4 1560 aa31.09■■■□□ 2.57
SNRPF-203ENST00000551316 DNAJC5Q9H3Z4 198 aa30.92■■■□□ 2.54
SNRPF-203ENST00000551316 CC2D2AQ9P2K1 1620 aa30.69■■■□□ 2.5
SNRPF-203ENST00000551316 CECR2Q9BXF3 1484 aa30.67■■■□□ 2.5
SNRPF-203ENST00000551316 DCAF8L2P0C7V8 631 aa30.59■■■□□ 2.49
SNRPF-203ENST00000551316 MYO15BQ96JP2 1530 aa30.32■■■□□ 2.44
SNRPF-203ENST00000551316 EIF4G1Q04637 1599 aaKnown RBP30.31■■■□□ 2.44
SNRPF-203ENST00000551316 SHROOM4Q9ULL8 1493 aa30.22■■■□□ 2.43
SNRPF-203ENST00000551316 SCRIBQ14160 1630 aa29.94■■■□□ 2.38
SNRPF-203ENST00000551316 CUX2O14529 1486 aa29.65■■■□□ 2.34
SNRPF-203ENST00000551316 ZCCHC6Q5VYS8 1495 aaKnown RBP29.59■■■□□ 2.33
SNRPF-203ENST00000551316 DCAF1Q9Y4B6 1507 aa29.54■■■□□ 2.32
SNRPF-203ENST00000551316 ERCC6Q03468 1493 aa29.29■■■□□ 2.28
SNRPF-203ENST00000551316 TRIM41Q8WV44 630 aa29.12■■■□□ 2.25
SNRPF-203ENST00000551316 THOC2Q8NI27 1593 aaKnown RBP28.96■■■□□ 2.23
SNRPF-203ENST00000551316 NESP48681 1621 aa28.94■■■□□ 2.22
SNRPF-203ENST00000551316 NCAPD3P42695 1498 aa28.78■■■□□ 2.2
SNRPF-203ENST00000551316 SMARCA2P51531 1590 aa28.64■■■□□ 2.18
SNRPF-203ENST00000551316 KIF21AQ7Z4S6 1674 aa28.64■■■□□ 2.17
SNRPF-203ENST00000551316 ATAD2BQ9ULI0 1458 aa28.61■■■□□ 2.17
SNRPF-203ENST00000551316 HMGXB3Q12766 1538 aa28.56■■■□□ 2.16
SNRPF-203ENST00000551316 LAMC3Q9Y6N6 1575 aa28.39■■■□□ 2.14
SNRPF-203ENST00000551316 SMARCA4P51532 1647 aa28.39■■■□□ 2.13
SNRPF-203ENST00000551316 BAZ1AQ9NRL2 1556 aaPredicted RBP28.37■■■□□ 2.13
SNRPF-203ENST00000551316 BAZ1BQ9UIG0 1483 aaKnown RBP28.23■■■□□ 2.11
SNRPF-203ENST00000551316 WDR62O43379 1518 aa28.15■■■□□ 2.1
SNRPF-203ENST00000551316 PDS5BQ9NTI5 1447 aa28.1■■■□□ 2.09
SNRPF-203ENST00000551316 MRC2Q9UBG0 1479 aa28.1■■■□□ 2.09
SNRPF-203ENST00000551316 RIMBP3CA6NJZ7 1639 aa28.08■■■□□ 2.09
SNRPF-203ENST00000551316 RIMBP3BA6NNM3 1639 aa28.08■■■□□ 2.09
SNRPF-203ENST00000551316 RIMBP3Q9UFD9 1639 aa28.08■■■□□ 2.09
SNRPF-203ENST00000551316 PEG3Q9GZU2 1588 aa28.06■■■□□ 2.08
SNRPF-203ENST00000551316 OSCARQ8IYS5 282 aa27.9■■■□□ 2.06
SNRPF-203ENST00000551316 CADPSQ9ULU8 1353 aa27.81■■■□□ 2.04
SNRPF-203ENST00000551316 ARHGEF11O15085 1522 aa27.78■■■□□ 2.04
SNRPF-203ENST00000551316 MROH2BQ7Z745 1585 aa27.77■■■□□ 2.04
SNRPF-203ENST00000551316 CEP164Q9UPV0 1460 aa27.73■■■□□ 2.03
SNRPF-203ENST00000551316 FANCD2Q9BXW9 1451 aa27.6■■■□□ 2.01
SNRPF-203ENST00000551316 URB2Q14146 1524 aaKnown RBP27.57■■■□□ 2
SNRPF-203ENST00000551316 ARAP1Q96P48 1450 aa27.47■■□□□ 1.99
SNRPF-203ENST00000551316 TRHP20396 242 aaPredicted RBP27.46■■□□□ 1.99
SNRPF-203ENST00000551316 WIZO95785 1651 aa27.46■■□□□ 1.99
SNRPF-203ENST00000551316 AEBP2Q6ZN18 517 aaPredicted RBP27.44■■□□□ 1.98
SNRPF-203ENST00000551316 ZNF608Q9ULD9 1512 aaPredicted RBP27.44■■□□□ 1.98
SNRPF-203ENST00000551316 CYB5RLQ6IPT4 315 aa27.43■■□□□ 1.98
SNRPF-203ENST00000551316 CHD1O14646 1710 aa27.36■■□□□ 1.97
SNRPF-203ENST00000551316 CFTRP13569 1480 aa27.32■■□□□ 1.96
SNRPF-203ENST00000551316 EIF4G3O43432 1585 aaKnown RBP27.28■■□□□ 1.96
SNRPF-203ENST00000551316 PRDM2Q13029 1718 aa27.2■■□□□ 1.94
SNRPF-203ENST00000551316 IFT140Q96RY7 1462 aa27.17■■□□□ 1.94
SNRPF-203ENST00000551316 RSF1Q96T23 1441 aaPredicted RBP27.07■■□□□ 1.92
SNRPF-203ENST00000551316 TOPBP1Q92547 1522 aa27■■□□□ 1.91
SNRPF-203ENST00000551316 TARBP1Q13395 1621 aaKnown RBP26.95■■□□□ 1.91
SNRPF-203ENST00000551316 AQRO60306 1485 aaKnown RBP eCLIP26.93■■□□□ 1.92e-6■■■□□ 18.3
SNRPF-203ENST00000551316 CLASP1Q7Z460 1538 aa26.92■■□□□ 1.9
SNRPF-203ENST00000551316 TOP2AP11388 1531 aaKnown RBP26.9■■□□□ 1.9
SNRPF-203ENST00000551316 FBLN2P98095 1184 aa26.8■■□□□ 1.88
SNRPF-203ENST00000551316 DNMBPQ6XZF7 1577 aa26.8■■□□□ 1.88
SNRPF-203ENST00000551316 ILDR1Q86SU0 546 aaPredicted RBP26.68■■□□□ 1.86
SNRPF-203ENST00000551316 SNAPC4Q5SXM2 1469 aa26.67■■□□□ 1.86
SNRPF-203ENST00000551316 POLA1P09884 1462 aaPredicted RBP26.65■■□□□ 1.86
SNRPF-203ENST00000551316 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
SNRPF-203ENST00000551316 RAD54L2Q9Y4B4 1467 aa26.61■■□□□ 1.85
SNRPF-203ENST00000551316 ABCC8Q09428 1581 aa26.6■■□□□ 1.85
SNRPF-203ENST00000551316 GAPVD1Q14C86 1478 aa26.59■■□□□ 1.85
SNRPF-203ENST00000551316 KIF13AQ9H1H9 1805 aa26.58■■□□□ 1.84
SNRPF-203ENST00000551316 CCDC88BA6NC98 1476 aa26.56■■□□□ 1.84
SNRPF-203ENST00000551316 TDRD9Q8NDG6 1382 aaKnown RBP26.53■■□□□ 1.84
SNRPF-203ENST00000551316 ERCC6L2Q5T890 1561 aa26.53■■□□□ 1.84
SNRPF-203ENST00000551316 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
SNRPF-203ENST00000551316 WDR97A6NE52 1622 aa26.39■■□□□ 1.82
SNRPF-203ENST00000551316 PBRM1Q86U86 1689 aa26.39■■□□□ 1.82
SNRPF-203ENST00000551316 SYNJ2O15056 1496 aa26.37■■□□□ 1.81
SNRPF-203ENST00000551316 SOGA1O94964 1423 aa26.35■■□□□ 1.81
SNRPF-203ENST00000551316 CHMP7Q8WUX9 453 aaPredicted RBP26.35■■□□□ 1.81
SNRPF-203ENST00000551316 FGD5Q6ZNL6 1462 aa26.32■■□□□ 1.8
SNRPF-203ENST00000551316 GRIN2BQ13224 1484 aa26.3■■□□□ 1.8
SNRPF-203ENST00000551316 KDM4FA0A1W2PPD8 638 aa26.28■■□□□ 1.8
SNRPF-203ENST00000551316 CEP170Q5SW79 1584 aa26.22■■□□□ 1.79
SNRPF-203ENST00000551316 CUX1P39880 1505 aa26.17■■□□□ 1.78
SNRPF-203ENST00000551316 SHROOM2Q13796 1616 aa26.14■■□□□ 1.77
SNRPF-203ENST00000551316 ABCA5Q8WWZ7 1642 aa26.12■■□□□ 1.77
SNRPF-203ENST00000551316 KDM6BO15054 1643 aa26.09■■□□□ 1.77
SNRPF-203ENST00000551316 DIP2BQ9P265 1576 aa26.07■■□□□ 1.76
SNRPF-203ENST00000551316 GRIN2AQ12879 1464 aa26.04■■□□□ 1.76
SNRPF-203ENST00000551316 ADAMTS12P58397 1594 aa26■■□□□ 1.75
SNRPF-203ENST00000551316 ABCC10Q5T3U5 1492 aa26■■□□□ 1.75
SNRPF-203ENST00000551316 TSPOAP1O95153 1857 aa26■■□□□ 1.75
SNRPF-203ENST00000551316 NUP160Q12769 1436 aa25.98■■□□□ 1.75
SNRPF-203ENST00000551316 HECW2Q9P2P5 1572 aa25.97■■□□□ 1.75
SNRPF-203ENST00000551316 MAPKBP1O60336 1514 aa25.9■■□□□ 1.74
SNRPF-203ENST00000551316 FAM69CQ0P6D2 419 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms