RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PELP1Q8IZL8 1130 aaKnown RBP9.96□□□□□ -0.81
SCN1A-203ENST00000409050 DCAF8L2P0C7V8 631 aa9.86□□□□□ -0.83
SCN1A-203ENST00000409050 NISCHQ9Y2I1 1504 aa9.72□□□□□ -0.85
SCN1A-203ENST00000409050 MYT1Q01538 1121 aa9.57□□□□□ -0.88
SCN1A-203ENST00000409050 FAM9AQ8IZU1 332 aaPredicted RBP9.5□□□□□ -0.89
SCN1A-203ENST00000409050 SUPT5HO00267 1087 aaKnown RBP9.5□□□□□ -0.89
SCN1A-203ENST00000409050 APLP2Q06481 763 aa9.49□□□□□ -0.89
SCN1A-203ENST00000409050 ZEB1P37275 1124 aaPredicted RBP9.48□□□□□ -0.89
SCN1A-203ENST00000409050 CCER1Q8TC90 406 aaPredicted RBP9.48□□□□□ -0.89
SCN1A-203ENST00000409050 CENPBP07199 599 aaPredicted RBP9.38□□□□□ -0.91
SCN1A-203ENST00000409050 ERICH6Q7L0X2 663 aa9.27□□□□□ -0.93
SCN1A-203ENST00000409050 SHROOM4Q9ULL8 1493 aa9.16□□□□□ -0.94
SCN1A-203ENST00000409050 NEFLP07196 543 aa9.15□□□□□ -0.95
SCN1A-203ENST00000409050 YTHDC1Q96MU7 727 aaKnown RBP9.09□□□□□ -0.95
SCN1A-203ENST00000409050 TRIM41Q8WV44 630 aa9.01□□□□□ -0.97
SCN1A-203ENST00000409050 PCGF6Q9BYE7 350 aa9.01□□□□□ -0.97
SCN1A-203ENST00000409050 TRIM26Q12899 539 aaPredicted RBP8.91□□□□□ -0.98
SCN1A-203ENST00000409050 DAXXQ9UER7 740 aaPredicted RBP8.89□□□□□ -0.99
SCN1A-203ENST00000409050 EHMT2Q96KQ7 1210 aa8.88□□□□□ -0.99
SCN1A-203ENST00000409050 UBTFP17480 764 aaKnown RBP8.88□□□□□ -0.99
SCN1A-203ENST00000409050 HRCP23327 699 aa8.78□□□□□ -1
SCN1A-203ENST00000409050 ATP1B4Q9UN42 357 aaPredicted RBP8.75□□□□□ -1.01
SCN1A-203ENST00000409050 TTBK1Q5TCY1 1321 aaPredicted RBP8.73□□□□□ -1.01
SCN1A-203ENST00000409050 RTL5Q5HYW3 569 aaPredicted RBP8.72□□□□□ -1.01
SCN1A-203ENST00000409050 CLSPNQ9HAW4 1339 aa8.7□□□□□ -1.02
SCN1A-203ENST00000409050 ZNF316A6NFI3 1004 aaPredicted RBP8.64□□□□□ -1.03
SCN1A-203ENST00000409050 RANGAP1P46060 587 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-203ENST00000409050 MYT1LQ9UL68 1186 aa8.61□□□□□ -1.03
SCN1A-203ENST00000409050 CHIC1Q5VXU3 224 aa8.56□□□□□ -1.04
SCN1A-203ENST00000409050 DIEXFQ68CQ4 756 aaKnown RBP8.54□□□□□ -1.04
SCN1A-203ENST00000409050 CDK11AQ9UQ88 783 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-203ENST00000409050 ZBTB47Q9UFB7 747 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-203ENST00000409050 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.5□□□□□ -1.05
SCN1A-203ENST00000409050 HNRNPUL2Q1KMD3 747 aaKnown RBP8.5□□□□□ -1.05
SCN1A-203ENST00000409050 ANP32CO43423 234 aa8.49□□□□□ -1.05
SCN1A-203ENST00000409050 ACIN1Q9UKV3 1341 aaKnown RBP8.48□□□□□ -1.05
SCN1A-203ENST00000409050 NEFMP07197 916 aa8.47□□□□□ -1.05
SCN1A-203ENST00000409050 POLR3GLQ9BT43 218 aa8.44□□□□□ -1.06
SCN1A-203ENST00000409050 ITGAEP38570 1179 aa8.41□□□□□ -1.06
SCN1A-203ENST00000409050 ANP32AP39687 249 aaKnown RBP8.41□□□□□ -1.06
SCN1A-203ENST00000409050 ANP32BQ92688 251 aaKnown RBP8.39□□□□□ -1.07
SCN1A-203ENST00000409050 GLIPR1L2Q4G1C9 344 aa8.39□□□□□ -1.07
SCN1A-203ENST00000409050 TRIM52Q96A61 297 aa8.36□□□□□ -1.07
SCN1A-203ENST00000409050 FAM50AQ14320 339 aaKnown RBP8.35□□□□□ -1.07
SCN1A-203ENST00000409050 EIF5BO60841 1220 aaKnown RBP8.34□□□□□ -1.07
SCN1A-203ENST00000409050 SLC4A1APQ9BWU0 796 aaKnown RBP8.33□□□□□ -1.08
SCN1A-203ENST00000409050 PPARGC1BQ86YN6 1023 aaKnown RBP8.32□□□□□ -1.08
SCN1A-203ENST00000409050 UPF2Q9HAU5 1272 aaKnown RBP8.32□□□□□ -1.08
SCN1A-203ENST00000409050 LOC105371045A0A1W2PR82 267 aa8.32□□□□□ -1.08
SCN1A-203ENST00000409050 CANXP27824 592 aaKnown RBP8.31□□□□□ -1.08
SCN1A-203ENST00000409050 DCAF1Q9Y4B6 1507 aa8.31□□□□□ -1.08
SCN1A-203ENST00000409050 ANP32EQ9BTT0 268 aa8.31□□□□□ -1.08
SCN1A-203ENST00000409050 GTF3C3Q9Y5Q9 886 aa8.3□□□□□ -1.08
SCN1A-203ENST00000409050 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.29□□□□□ -1.08
SCN1A-203ENST00000409050 CSRNP3Q8WYN3 585 aa8.25□□□□□ -1.09
SCN1A-203ENST00000409050 NEUROD1Q13562 356 aa8.23□□□□□ -1.09
SCN1A-203ENST00000409050 TONSLQ96HA7 1378 aa8.22□□□□□ -1.09
SCN1A-203ENST00000409050 EEA1Q15075 1411 aa8.21□□□□□ -1.1
SCN1A-203ENST00000409050 DDRGK1Q96HY6 314 aa8.19□□□□□ -1.1
SCN1A-203ENST00000409050 HSP90AA1P07900 732 aaKnown RBP8.18□□□□□ -1.1
SCN1A-203ENST00000409050 BECN1Q14457 450 aa8.14□□□□□ -1.11
SCN1A-203ENST00000409050 BCANQ96GW7 911 aa8.13□□□□□ -1.11
SCN1A-203ENST00000409050 ZNF326Q5BKZ1 582 aaKnown RBP8.13□□□□□ -1.11
SCN1A-203ENST00000409050 CNGB1Q14028 1251 aaPredicted RBP8.13□□□□□ -1.11
SCN1A-203ENST00000409050 SLC24A1O60721 1099 aa8.13□□□□□ -1.11
SCN1A-203ENST00000409050 GOLGA6L22H0YM25 854 aa8.11□□□□□ -1.11
SCN1A-203ENST00000409050 CHMP4BQ9H444 224 aaKnown RBP8.11□□□□□ -1.11
SCN1A-203ENST00000409050 MYH16Q9H6N6 1097 aa8.1□□□□□ -1.11
SCN1A-203ENST00000409050 CCDC136Q96JN2 1154 aa8.1□□□□□ -1.11
SCN1A-203ENST00000409050 RSF1Q96T23 1441 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-203ENST00000409050 CDCA8Q53HL2 280 aa8.1□□□□□ -1.11
SCN1A-203ENST00000409050 ESF1Q9H501 851 aaKnown RBP8.09□□□□□ -1.11
SCN1A-203ENST00000409050 TNNT2P45379 298 aaPredicted RBP8.09□□□□□ -1.11
SCN1A-203ENST00000409050 PPM1GO15355 546 aaPredicted RBP8.08□□□□□ -1.12
SCN1A-203ENST00000409050 NCLP19338 710 aaKnown RBP8.08□□□□□ -1.12
SCN1A-203ENST00000409050 FKBP8Q14318 412 aa8.08□□□□□ -1.12
SCN1A-203ENST00000409050 WDR43Q15061 677 aaKnown RBP eCLIP8.08□□□□□ -1.12
SCN1A-203ENST00000409050 CFAP44Q96MT7 982 aa8.08□□□□□ -1.12
SCN1A-203ENST00000409050 TMC1Q8TDI8 760 aa8.08□□□□□ -1.12
SCN1A-203ENST00000409050 HNRNPUQ00839 825 aaKnown RBP eCLIP8.07□□□□□ -1.12
SCN1A-203ENST00000409050 ZCCHC6Q5VYS8 1495 aaKnown RBP8.07□□□□□ -1.12
SCN1A-203ENST00000409050 CDK11BP21127 795 aaKnown RBP8.06□□□□□ -1.12
SCN1A-203ENST00000409050 TRIM44Q96DX7 344 aaPredicted RBP8.05□□□□□ -1.12
SCN1A-203ENST00000409050 TIMELESSQ9UNS1 1208 aa8.05□□□□□ -1.12
SCN1A-203ENST00000409050 CCDC180Q9P1Z9 1646 aa8.05□□□□□ -1.12
SCN1A-203ENST00000409050 MS4A1P11836 297 aa8.05□□□□□ -1.12
SCN1A-203ENST00000409050 ABCC9O60706 1549 aa8.05□□□□□ -1.12
SCN1A-203ENST00000409050 ERICH6BQ5W0A0 696 aa8.05□□□□□ -1.12
SCN1A-203ENST00000409050 NPM1P06748 294 aaKnown RBP eCLIP8.04□□□□□ -1.12
SCN1A-203ENST00000409050 TSPY4P0CV99 314 aa8.04□□□□□ -1.12
SCN1A-203ENST00000409050 TSPY10P0CW01 314 aa8.04□□□□□ -1.12
SCN1A-203ENST00000409050 NPM2Q86SE8 214 aaKnown RBP8.03□□□□□ -1.12
SCN1A-203ENST00000409050 EIF4G2P78344 907 aaKnown RBP eCLIP8.03□□□□□ -1.12
SCN1A-203ENST00000409050 CASC1Q6TDU7 716 aa8.02□□□□□ -1.13
SCN1A-203ENST00000409050 PTMSP20962 102 aa8.01□□□□□ -1.13
SCN1A-203ENST00000409050 STAG3Q9UJ98 1225 aa8.01□□□□□ -1.13
SCN1A-203ENST00000409050 GOLGA3Q08378 1498 aa8□□□□□ -1.13
SCN1A-203ENST00000409050 MTUS2Q5JR59 1369 aa8□□□□□ -1.13
SCN1A-203ENST00000409050 CFAP53Q96M91 514 aa8□□□□□ -1.13
SCN1A-203ENST00000409050 MRS2Q9HD23 443 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms