RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 PELP1Q8IZL8 1130 aaKnown RBP10.07□□□□□ -0.8
SCN1A-212ENST00000636194 DCAF8L2P0C7V8 631 aa9.61□□□□□ -0.87
SCN1A-212ENST00000636194 ERICH6Q7L0X2 663 aa9.6□□□□□ -0.87
SCN1A-212ENST00000636194 FAM9AQ8IZU1 332 aaPredicted RBP9.57□□□□□ -0.88
SCN1A-212ENST00000636194 CCER1Q8TC90 406 aaPredicted RBP9.57□□□□□ -0.88
SCN1A-212ENST00000636194 MYT1Q01538 1121 aa9.37□□□□□ -0.91
SCN1A-212ENST00000636194 YTHDC1Q96MU7 727 aaKnown RBP9.35□□□□□ -0.91
SCN1A-212ENST00000636194 APLP2Q06481 763 aa9.31□□□□□ -0.92
SCN1A-212ENST00000636194 DAXXQ9UER7 740 aaPredicted RBP9.14□□□□□ -0.95
SCN1A-212ENST00000636194 NEFLP07196 543 aa9.08□□□□□ -0.96
SCN1A-212ENST00000636194 CENPBP07199 599 aaPredicted RBP9.05□□□□□ -0.96
SCN1A-212ENST00000636194 TTBK1Q5TCY1 1321 aaPredicted RBP8.97□□□□□ -0.97
SCN1A-212ENST00000636194 SUPT5HO00267 1087 aaKnown RBP8.87□□□□□ -0.99
SCN1A-212ENST00000636194 EHMT2Q96KQ7 1210 aa8.84□□□□□ -0.99
SCN1A-212ENST00000636194 ZNF316A6NFI3 1004 aaPredicted RBP8.82□□□□□ -1
SCN1A-212ENST00000636194 ZEB1P37275 1124 aaPredicted RBP8.79□□□□□ -1
SCN1A-212ENST00000636194 RTL5Q5HYW3 569 aaPredicted RBP8.74□□□□□ -1.01
SCN1A-212ENST00000636194 ATP1B4Q9UN42 357 aaPredicted RBP8.73□□□□□ -1.01
SCN1A-212ENST00000636194 MYT1LQ9UL68 1186 aa8.7□□□□□ -1.02
SCN1A-212ENST00000636194 CLSPNQ9HAW4 1339 aa8.69□□□□□ -1.02
SCN1A-212ENST00000636194 ZBTB47Q9UFB7 747 aaPredicted RBP8.66□□□□□ -1.02
SCN1A-212ENST00000636194 PCGF6Q9BYE7 350 aa8.63□□□□□ -1.03
SCN1A-212ENST00000636194 NEFMP07197 916 aa8.61□□□□□ -1.03
SCN1A-212ENST00000636194 SLC4A1APQ9BWU0 796 aaKnown RBP8.6□□□□□ -1.03
SCN1A-212ENST00000636194 CDK11BP21127 795 aaKnown RBP8.56□□□□□ -1.04
SCN1A-212ENST00000636194 CDK11AQ9UQ88 783 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-212ENST00000636194 GLIPR1L2Q4G1C9 344 aa8.52□□□□□ -1.04
SCN1A-212ENST00000636194 RANGAP1P46060 587 aaPredicted RBP8.52□□□□□ -1.04
SCN1A-212ENST00000636194 ANP32BQ92688 251 aaKnown RBP8.52□□□□□ -1.05
SCN1A-212ENST00000636194 POLR3GLQ9BT43 218 aa8.51□□□□□ -1.05
SCN1A-212ENST00000636194 CHIC1Q5VXU3 224 aa8.49□□□□□ -1.05
SCN1A-212ENST00000636194 SHROOM4Q9ULL8 1493 aa8.48□□□□□ -1.05
SCN1A-212ENST00000636194 SLC24A1O60721 1099 aa8.47□□□□□ -1.05
SCN1A-212ENST00000636194 UBTFP17480 764 aaKnown RBP8.46□□□□□ -1.06
SCN1A-212ENST00000636194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-212ENST00000636194 HNRNPUL2Q1KMD3 747 aaKnown RBP8.43□□□□□ -1.06
SCN1A-212ENST00000636194 NISCHQ9Y2I1 1504 aa8.41□□□□□ -1.06
SCN1A-212ENST00000636194 EIF5BO60841 1220 aaKnown RBP8.36□□□□□ -1.07
SCN1A-212ENST00000636194 CANXP27824 592 aaKnown RBP8.35□□□□□ -1.07
SCN1A-212ENST00000636194 BCL11AQ9H165 835 aa8.35□□□□□ -1.07
SCN1A-212ENST00000636194 CNGB1Q14028 1251 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-212ENST00000636194 TRIM41Q8WV44 630 aa8.33□□□□□ -1.08
SCN1A-212ENST00000636194 HSP90AA1P07900 732 aaKnown RBP8.32□□□□□ -1.08
SCN1A-212ENST00000636194 TNNT2P45379 298 aaPredicted RBP8.26□□□□□ -1.09
SCN1A-212ENST00000636194 BCANQ96GW7 911 aa8.26□□□□□ -1.09
SCN1A-212ENST00000636194 UPF2Q9HAU5 1272 aaKnown RBP8.26□□□□□ -1.09
SCN1A-212ENST00000636194 ANP32AP39687 249 aaKnown RBP8.23□□□□□ -1.09
SCN1A-212ENST00000636194 NCBP3Q53F19 620 aaKnown RBP8.22□□□□□ -1.09
SCN1A-212ENST00000636194 ITGAEP38570 1179 aa8.18□□□□□ -1.1
SCN1A-212ENST00000636194 TRIM44Q96DX7 344 aaPredicted RBP8.18□□□□□ -1.1
SCN1A-212ENST00000636194 ESF1Q9H501 851 aaKnown RBP8.17□□□□□ -1.1
SCN1A-212ENST00000636194 NPM2Q86SE8 214 aaKnown RBP8.16□□□□□ -1.1
SCN1A-212ENST00000636194 TULP1O00294 542 aaPredicted RBP8.16□□□□□ -1.1
SCN1A-212ENST00000636194 ZRSR1Q15695 479 aaKnown RBP8.13□□□□□ -1.11
SCN1A-212ENST00000636194 PRM3Q9NNZ6 103 aa8.13□□□□□ -1.11
SCN1A-212ENST00000636194 KRI1Q8N9T8 703 aaKnown RBP8.1□□□□□ -1.11
SCN1A-212ENST00000636194 ANP32CO43423 234 aa8.09□□□□□ -1.11
SCN1A-212ENST00000636194 MYH16Q9H6N6 1097 aa8.07□□□□□ -1.12
SCN1A-212ENST00000636194 TRIM26Q12899 539 aaPredicted RBP8.06□□□□□ -1.12
SCN1A-212ENST00000636194 L1TD1Q5T7N2 865 aaKnown RBP8.06□□□□□ -1.12
SCN1A-212ENST00000636194 NCLP19338 710 aaKnown RBP8.06□□□□□ -1.12
SCN1A-212ENST00000636194 ANP32EQ9BTT0 268 aa8.06□□□□□ -1.12
SCN1A-212ENST00000636194 TRIM52Q96A61 297 aa8.06□□□□□ -1.12
SCN1A-212ENST00000636194 GOLGA6L6A8MZA4 724 aa8.04□□□□□ -1.12
SCN1A-212ENST00000636194 CALRP27797 417 aaKnown RBP8.03□□□□□ -1.12
SCN1A-212ENST00000636194 NRDCO43847 1150 aa8.02□□□□□ -1.13
SCN1A-212ENST00000636194 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.02□□□□□ -1.13
SCN1A-212ENST00000636194 STAG3Q9UJ98 1225 aa8.01□□□□□ -1.13
SCN1A-212ENST00000636194 CLSTN1O94985 981 aa8.01□□□□□ -1.13
SCN1A-212ENST00000636194 A0A0G2JS52 829 aa8.01□□□□□ -1.13
SCN1A-212ENST00000636194 ZNF326Q5BKZ1 582 aaKnown RBP8□□□□□ -1.13
SCN1A-212ENST00000636194 GOLGA6L22H0YM25 854 aa8□□□□□ -1.13
SCN1A-212ENST00000636194 FAM50AQ14320 339 aaKnown RBP8□□□□□ -1.13
SCN1A-212ENST00000636194 ARXQ96QS3 562 aa8□□□□□ -1.13
SCN1A-212ENST00000636194 DIEXFQ68CQ4 756 aaKnown RBP7.99□□□□□ -1.13
SCN1A-212ENST00000636194 DNTTIP2Q5QJE6 756 aaKnown RBP7.97□□□□□ -1.13
SCN1A-212ENST00000636194 SCAF1Q9H7N4 1312 aaKnown RBP7.96□□□□□ -1.13
SCN1A-212ENST00000636194 KAT6BQ8WYB5 2073 aa7.96□□□□□ -1.13
SCN1A-212ENST00000636194 CASC1Q6TDU7 716 aa7.96□□□□□ -1.14
SCN1A-212ENST00000636194 KIAA2012Q0VF49 1180 aa7.95□□□□□ -1.14
SCN1A-212ENST00000636194 HRCP23327 699 aa7.95□□□□□ -1.14
SCN1A-212ENST00000636194 NPHP1O15259 732 aa7.94□□□□□ -1.14
SCN1A-212ENST00000636194 CHAF1AQ13111 956 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-212ENST00000636194 NOC3LQ8WTT2 800 aaKnown RBP7.94□□□□□ -1.14
SCN1A-212ENST00000636194 AMER1Q5JTC6 1135 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-212ENST00000636194 BECN1Q14457 450 aa7.93□□□□□ -1.14
SCN1A-212ENST00000636194 PTMAP06454 111 aaKnown RBP7.93□□□□□ -1.14
SCN1A-212ENST00000636194 USP35Q9P2H5 1018 aa7.92□□□□□ -1.14
SCN1A-212ENST00000636194 PPARGC1BQ86YN6 1023 aaKnown RBP7.9□□□□□ -1.14
SCN1A-212ENST00000636194 NEUROD1Q13562 356 aa7.89□□□□□ -1.15
SCN1A-212ENST00000636194 GOLGA2Q08379 1002 aa7.89□□□□□ -1.15
SCN1A-212ENST00000636194 HAP1P54257 671 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-212ENST00000636194 EIF4G2P78344 907 aaKnown RBP eCLIP7.86□□□□□ -1.15
SCN1A-212ENST00000636194 A0A0U1RQG5 324 aaPredicted RBP7.86□□□□□ -1.15
SCN1A-212ENST00000636194 PNNQ9H307 717 aaKnown RBP7.85□□□□□ -1.15
SCN1A-212ENST00000636194 DDRGK1Q96HY6 314 aa7.84□□□□□ -1.15
SCN1A-212ENST00000636194 TNNT3P45378 269 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-212ENST00000636194 NPM1P06748 294 aaKnown RBP eCLIP7.83□□□□□ -1.16
SCN1A-212ENST00000636194 WDR43Q15061 677 aaKnown RBP eCLIP7.82□□□□□ -1.16
SCN1A-212ENST00000636194 ERICH6BQ5W0A0 696 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms