Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 KMT5A-204ENST00000437519 1774 ntTSL 214.94□□□□□ -0.021e-7■□□□□ 10.5
UPF1Q92900 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.94□□□□□ -0.025e-6■□□□□ 10.5
UPF1Q92900 NUP54-202ENST00000502850 1604 ntTSL 1 (best)14.66□□□□□ -0.061e-7■□□□□ 10.5
UPF1Q92900 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.15e-6■□□□□ 10.5
UPF1Q92900 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.135e-6■□□□□ 10.5
UPF1Q92900 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.151e-7■□□□□ 10.5
UPF1Q92900 AC012321.1-201ENST00000561622 1588 ntBASIC13.67□□□□□ -0.222e-12■□□□□ 10.5
UPF1Q92900 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.35e-6■□□□□ 10.5
UPF1Q92900 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.35e-6■□□□□ 10.5
UPF1Q92900 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.435e-6■□□□□ 10.5
UPF1Q92900 ABCA2-218ENST00000487109 8031 ntTSL 1 (best)12.1□□□□□ -0.475e-6■□□□□ 10.5
UPF1Q92900 ABCA2-223ENST00000614293 8146 ntTSL 5 BASIC12.1□□□□□ -0.475e-6■□□□□ 10.5
UPF1Q92900 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.55e-6■□□□□ 10.5
UPF1Q92900 ABCA2-208ENST00000459850 8073 ntTSL 1 (best)11.9□□□□□ -0.55e-6■□□□□ 10.5
UPF1Q92900 SIN3A-201ENST00000360439 5050 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.675e-6■□□□□ 10.5
UPF1Q92900 ATXN7L3-208ENST00000590169 593 ntTSL 410.83□□□□□ -0.685e-6■□□□□ 10.5
UPF1Q92900 NUP54-206ENST00000508465 744 ntTSL 310.7□□□□□ -0.71e-7■□□□□ 10.5
UPF1Q92900 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC10.7□□□□□ -0.75e-6■□□□□ 10.5
UPF1Q92900 CAST-229ENST00000510098 1323 ntTSL 1 (best)9.7□□□□□ -0.865e-6■□□□□ 10.5
UPF1Q92900 ZDHHC3-202ENST00000339420 3226 ntTSL 29.64□□□□□ -0.875e-6■□□□□ 10.5
UPF1Q92900 ASAH1-248ENST00000637484 2304 ntTSL 59.57□□□□□ -0.885e-6■□□□□ 10.5
UPF1Q92900 NUP54-208ENST00000508604 1671 ntTSL 29.44□□□□□ -0.91e-7■□□□□ 10.5
UPF1Q92900 ALDH1L2-201ENST00000258494 7547 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.925e-6■□□□□ 10.5
UPF1Q92900 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC9.19□□□□□ -0.945e-6■□□□□ 10.5
UPF1Q92900 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC8.49□□□□□ -1.055e-6■□□□□ 10.5
UPF1Q92900 ATXN3-213ENST00000526245 352 ntTSL 38.39□□□□□ -1.075e-6■□□□□ 10.5
UPF1Q92900 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC7.84□□□□□ -1.155e-6■□□□□ 10.5
UPF1Q92900 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.7□□□□□ -1.185e-6■□□□□ 10.5
UPF1Q92900 KMT5A-208ENST00000485469 454 ntTSL 37.43□□□□□ -1.221e-7■□□□□ 10.5
UPF1Q92900 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.82□□□□□ -1.325e-6■□□□□ 10.5
UPF1Q92900 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.38□□□□□ -1.395e-6■□□□□ 10.5
UPF1Q92900 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.445e-6■□□□□ 10.5
UPF1Q92900 ANXA11-207ENST00000463340 377 ntTSL 35.76□□□□□ -1.495e-6■□□□□ 10.5
UPF1Q92900 CAST-209ENST00000437034 3377 ntTSL 1 (best)5.76□□□□□ -1.495e-6■□□□□ 10.5
UPF1Q92900 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.495e-6■□□□□ 10.5
UPF1Q92900 ALDH1L2-203ENST00000549335 7403 ntTSL 24.16□□□□□ -1.745e-6■□□□□ 10.5
UPF1Q92900 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.835e-6■□□□□ 10.5
UPF1Q92900 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC26.57■■□□□ 1.842e-6■□□□□ 10.4
UPF1Q92900 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC20.29■□□□□ 0.842e-6■□□□□ 10.4
UPF1Q92900 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.742e-6■□□□□ 10.4
UPF1Q92900 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.37■□□□□ 0.692e-6■□□□□ 10.4
UPF1Q92900 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.1■□□□□ 0.652e-6■□□□□ 10.4
UPF1Q92900 BBS5-205ENST00000472667 2705 ntTSL 218.89■□□□□ 0.612e-6■□□□□ 10.4
UPF1Q92900 BAP1-203ENST00000466093 1127 ntTSL 518.86■□□□□ 0.612e-6■□□□□ 10.4
UPF1Q92900 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.432e-6■□□□□ 10.4
UPF1Q92900 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.97■□□□□ 0.312e-6■□□□□ 10.4
UPF1Q92900 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.12e-6■□□□□ 10.4
UPF1Q92900 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.064e-6■□□□□ 10.4
UPF1Q92900 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.082e-6■□□□□ 10.4
UPF1Q92900 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.472e-6■□□□□ 10.4
UPF1Q92900 PLAGL2-201ENST00000246229 5705 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.632e-6■□□□□ 10.4
UPF1Q92900 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.482e-6■□□□□ 10.4
UPF1Q92900 LETMD1-236ENST00000553043 727 ntTSL 211.28□□□□□ -0.64e-9■□□□□ 10.4
UPF1Q92900 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.86■□□□□ 0.291e-8■□□□□ 10.4
UPF1Q92900 AL138756.1-203ENST00000563249 599 ntTSL 416.08■□□□□ 0.164e-8■□□□□ 10.4
UPF1Q92900 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.764e-7■□□□□ 10.4
UPF1Q92900 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.111e-14■□□□□ 10.4
UPF1Q92900 AL121845.2-202ENST00000476221 446 ntTSL 525.3■■□□□ 1.641e-14■□□□□ 10.4
UPF1Q92900 LIME1-210ENST00000621325 2410 ntTSL 223.25■■□□□ 1.311e-14■□□□□ 10.4
UPF1Q92900 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC22.02■■□□□ 1.121e-14■□□□□ 10.4
UPF1Q92900 LIME1-209ENST00000494776 391 ntTSL 522.02■■□□□ 1.121e-14■□□□□ 10.4
UPF1Q92900 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.21■□□□□ 0.181e-14■□□□□ 10.4
UPF1Q92900 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC21.45■■□□□ 1.027e-7■□□□□ 10.4
UPF1Q92900 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.117e-7■□□□□ 10.4
UPF1Q92900 NDE1-211ENST00000576502 1131 ntTSL 219.44■□□□□ 0.71e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-206ENST00000453771 1892 ntTSL 513.27□□□□□ -0.283e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.153e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.343e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.353e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.393e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-213ENST00000638800 7078 ntTSL 55.94□□□□□ -1.463e-7■□□□□ 10.4
UPF1Q92900 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.493e-7■□□□□ 10.4
UPF1Q92900 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.18□□□□□ -1.583e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-212ENST00000495527 8404 ntTSL 1 (best)4.86□□□□□ -1.633e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-215ENST00000640465 4365 ntTSL 1 (best)4.61□□□□□ -1.673e-7■□□□□ 10.4
UPF1Q92900 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.683e-7■□□□□ 10.4
UPF1Q92900 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.571e-12■□□□□ 10.4
UPF1Q92900 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.031e-12■□□□□ 10.4
UPF1Q92900 CLIC1-207ENST00000375780 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.21e-12■□□□□ 10.4
UPF1Q92900 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.111e-12■□□□□ 10.4
UPF1Q92900 CLIC1-210ENST00000616760 1098 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.111e-12■□□□□ 10.4
UPF1Q92900 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.872e-7■□□□□ 10.4
UPF1Q92900 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.28■□□□□ 0.842e-7■□□□□ 10.4
UPF1Q92900 CSNK1D-221ENST00000582844 957 ntTSL 530.82■■■□□ 2.524e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-213ENST00000580446 612 ntTSL 323.62■■□□□ 1.374e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-223ENST00000584472 586 ntTSL 422.36■■□□□ 1.174e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-211ENST00000579316 692 ntTSL 222.33■■□□□ 1.174e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-219ENST00000581660 611 ntTSL 522.33■■□□□ 1.174e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-212ENST00000580061 578 ntTSL 320.54■□□□□ 0.884e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-209ENST00000578904 1269 ntTSL 318.56■□□□□ 0.564e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-207ENST00000578194 567 ntTSL 417.21■□□□□ 0.354e-6■□□□□ 10.4
UPF1Q92900 CSNK1D-226ENST00000585026 563 ntTSL 516.25■□□□□ 0.194e-6■□□□□ 10.4
UPF1Q92900 CD81-206ENST00000481386 898 ntTSL 228.93■■■□□ 2.228e-8■□□□□ 10.4
UPF1Q92900 CD81-212ENST00000526072 1172 ntTSL 5 BASIC26.79■■□□□ 1.888e-8■□□□□ 10.4
UPF1Q92900 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.198e-8■□□□□ 10.4
UPF1Q92900 CD81-216ENST00000531840 5235 ntTSL 1 (best)19.26■□□□□ 0.678e-8■□□□□ 10.4
UPF1Q92900 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.334e-10■□□□□ 10.3
UPF1Q92900 CCNI-206ENST00000511943 576 ntTSL 38.32□□□□□ -1.084e-10■□□□□ 10.3
UPF1Q92900 ESPN-207ENST00000475228 813 ntTSL 524.93■■□□□ 1.583e-9■□□□□ 10.3
UPF1Q92900 PANK3-201ENST00000239231 10506 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.454e-8■□□□□ 10.3
Retrieved 100 of 15,879 protein–RNA pairs in 79.6 ms