RNA–Protein interactions for RNA: ENST00000584755.1

UBBP4-202, Transcript of ubiquitin B pseudogene 4, humanhuman

TSL 1 (best) BASIC

Gene UBBP4, Length 1,459 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-202ENST00000584755 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
UBBP4-202ENST00000584755 CCDC180Q9P1Z9 1646 aa28.23■■■□□ 2.11
UBBP4-202ENST00000584755 ZCCHC6Q5VYS8 1495 aaKnown RBP27.07■■□□□ 1.92
UBBP4-202ENST00000584755 DCAF1Q9Y4B6 1507 aa26.73■■□□□ 1.87
UBBP4-202ENST00000584755 ABCC9O60706 1549 aa26.68■■□□□ 1.86
UBBP4-202ENST00000584755 MYO15BQ96JP2 1530 aa26.5■■□□□ 1.83
UBBP4-202ENST00000584755 DCAF8L2P0C7V8 631 aa26.44■■□□□ 1.82
UBBP4-202ENST00000584755 NACADO15069 1562 aa26.31■■□□□ 1.8
UBBP4-202ENST00000584755 RB1CC1Q8TDY2 1594 aa26.09■■□□□ 1.77
UBBP4-202ENST00000584755 SHROOM4Q9ULL8 1493 aa26■■□□□ 1.75
UBBP4-202ENST00000584755 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
UBBP4-202ENST00000584755 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
UBBP4-202ENST00000584755 BICRAQ9NZM4 1560 aa25.32■■□□□ 1.64
UBBP4-202ENST00000584755 PABPN1Q86U42 306 aaKnown RBP eCLIP25.09■■□□□ 1.61
UBBP4-202ENST00000584755 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
UBBP4-202ENST00000584755 SUPT5HO00267 1087 aaKnown RBP24.94■■□□□ 1.58
UBBP4-202ENST00000584755 RSF1Q96T23 1441 aaPredicted RBP24.93■■□□□ 1.58
UBBP4-202ENST00000584755 BAZ1AQ9NRL2 1556 aaPredicted RBP24.9■■□□□ 1.58
UBBP4-202ENST00000584755 MROH2BQ7Z745 1585 aa24.86■■□□□ 1.57
UBBP4-202ENST00000584755 SMARCA4P51532 1647 aa24.81■■□□□ 1.56
UBBP4-202ENST00000584755 WIZO95785 1651 aa24.63■■□□□ 1.53
UBBP4-202ENST00000584755 PEG3Q9GZU2 1588 aa24.58■■□□□ 1.53
UBBP4-202ENST00000584755 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
UBBP4-202ENST00000584755 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
UBBP4-202ENST00000584755 TOP2AP11388 1531 aaKnown RBP24.43■■□□□ 1.5
UBBP4-202ENST00000584755 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
UBBP4-202ENST00000584755 NCAPD3P42695 1498 aa24.28■■□□□ 1.48
UBBP4-202ENST00000584755 BAZ1BQ9UIG0 1483 aaKnown RBP24.25■■□□□ 1.47
UBBP4-202ENST00000584755 HMGXB3Q12766 1538 aa24.25■■□□□ 1.47
UBBP4-202ENST00000584755 CC2D2AQ9P2K1 1620 aa24.2■■□□□ 1.46
UBBP4-202ENST00000584755 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
UBBP4-202ENST00000584755 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
UBBP4-202ENST00000584755 CFTRP13569 1480 aa23.69■■□□□ 1.38
UBBP4-202ENST00000584755 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
UBBP4-202ENST00000584755 CADPSQ9ULU8 1353 aa23.61■■□□□ 1.37
UBBP4-202ENST00000584755 PRDM2Q13029 1718 aa23.57■■□□□ 1.36
UBBP4-202ENST00000584755 ABCC8Q09428 1581 aa23.54■■□□□ 1.36
UBBP4-202ENST00000584755 TRIM41Q8WV44 630 aa23.51■■□□□ 1.35
UBBP4-202ENST00000584755 LAMC3Q9Y6N6 1575 aa23.47■■□□□ 1.35
UBBP4-202ENST00000584755 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.34
UBBP4-202ENST00000584755 NESP48681 1621 aa23.4■■□□□ 1.34
UBBP4-202ENST00000584755 SYNJ1O43426 1573 aa23.36■■□□□ 1.33
UBBP4-202ENST00000584755 FANCD2Q9BXW9 1451 aa23.33■■□□□ 1.32
UBBP4-202ENST00000584755 TOP2BQ02880 1626 aa23.32■■□□□ 1.32
UBBP4-202ENST00000584755 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
UBBP4-202ENST00000584755 CUX1P39880 1505 aa23.26■■□□□ 1.31
UBBP4-202ENST00000584755 PDS5BQ9NTI5 1447 aa23.26■■□□□ 1.31
UBBP4-202ENST00000584755 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
UBBP4-202ENST00000584755 KIF21AQ7Z4S6 1674 aa23.14■■□□□ 1.3
UBBP4-202ENST00000584755 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
UBBP4-202ENST00000584755 SOGA1O94964 1423 aa23.08■■□□□ 1.29
UBBP4-202ENST00000584755 EEA1Q15075 1411 aa23.08■■□□□ 1.29
UBBP4-202ENST00000584755 TOPBP1Q92547 1522 aa23.08■■□□□ 1.28
UBBP4-202ENST00000584755 URB2Q14146 1524 aaKnown RBP23.06■■□□□ 1.28
UBBP4-202ENST00000584755 FGD5Q6ZNL6 1462 aa23.02■■□□□ 1.28
UBBP4-202ENST00000584755 RUSC2Q8N2Y8 1516 aa23■■□□□ 1.27
UBBP4-202ENST00000584755 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
UBBP4-202ENST00000584755 MRC2Q9UBG0 1479 aa22.98■■□□□ 1.27
UBBP4-202ENST00000584755 POLA1P09884 1462 aaPredicted RBP22.95■■□□□ 1.27
UBBP4-202ENST00000584755 WDR62O43379 1518 aa22.9■■□□□ 1.26
UBBP4-202ENST00000584755 LOC105371045A0A1W2PR82 267 aa22.89■■□□□ 1.25
UBBP4-202ENST00000584755 CSRNP3Q8WYN3 585 aa22.89■■□□□ 1.25
UBBP4-202ENST00000584755 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
UBBP4-202ENST00000584755 KIF27Q86VH2 1401 aa22.88■■□□□ 1.25
UBBP4-202ENST00000584755 ABCA10Q8WWZ4 1543 aa22.86■■□□□ 1.25
UBBP4-202ENST00000584755 THOC2Q8NI27 1593 aaKnown RBP22.85■■□□□ 1.25
UBBP4-202ENST00000584755 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
UBBP4-202ENST00000584755 CUX2O14529 1486 aa22.82■■□□□ 1.24
UBBP4-202ENST00000584755 WDR97A6NE52 1622 aa22.82■■□□□ 1.24
UBBP4-202ENST00000584755 KIF21BO75037 1637 aa22.78■■□□□ 1.24
UBBP4-202ENST00000584755 TARBP1Q13395 1621 aaKnown RBP22.77■■□□□ 1.24
UBBP4-202ENST00000584755 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
UBBP4-202ENST00000584755 GOLGA3Q08378 1498 aa22.71■■□□□ 1.23
UBBP4-202ENST00000584755 ABCA5Q8WWZ7 1642 aa22.69■■□□□ 1.22
UBBP4-202ENST00000584755 IGF1RP08069 1367 aa22.69■■□□□ 1.22
UBBP4-202ENST00000584755 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
UBBP4-202ENST00000584755 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
UBBP4-202ENST00000584755 RAPGEF2Q9Y4G8 1499 aa22.63■■□□□ 1.21
UBBP4-202ENST00000584755 TNIKQ9UKE5 1360 aa22.62■■□□□ 1.21
UBBP4-202ENST00000584755 TDRD9Q8NDG6 1382 aaKnown RBP22.6■■□□□ 1.21
UBBP4-202ENST00000584755 GAPVD1Q14C86 1478 aa22.6■■□□□ 1.21
UBBP4-202ENST00000584755 EHMT2Q96KQ7 1210 aa22.59■■□□□ 1.21
UBBP4-202ENST00000584755 CUL7Q14999 1698 aa22.56■■□□□ 1.2
UBBP4-202ENST00000584755 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
UBBP4-202ENST00000584755 ZNF608Q9ULD9 1512 aaPredicted RBP22.51■■□□□ 1.19
UBBP4-202ENST00000584755 UBTFP17480 764 aaKnown RBP22.51■■□□□ 1.19
UBBP4-202ENST00000584755 PBRM1Q86U86 1689 aa22.5■■□□□ 1.19
UBBP4-202ENST00000584755 AQRO60306 1485 aaKnown RBP eCLIP22.5■■□□□ 1.19
UBBP4-202ENST00000584755 GRIN2BQ13224 1484 aa22.47■■□□□ 1.19
UBBP4-202ENST00000584755 EIF4G3O43432 1585 aaKnown RBP22.46■■□□□ 1.19
UBBP4-202ENST00000584755 CEP162Q5TB80 1403 aa22.45■■□□□ 1.18
UBBP4-202ENST00000584755 ADAMTS12P58397 1594 aa22.39■■□□□ 1.18
UBBP4-202ENST00000584755 FHAD1B1AJZ9 1412 aa22.38■■□□□ 1.17
UBBP4-202ENST00000584755 CLIP1P30622 1438 aa22.32■■□□□ 1.16
UBBP4-202ENST00000584755 MAGI1Q96QZ7 1491 aaPredicted RBP22.32■■□□□ 1.16
UBBP4-202ENST00000584755 SNAPC4Q5SXM2 1469 aa22.31■■□□□ 1.16
UBBP4-202ENST00000584755 CTTNBP2Q8WZ74 1663 aa22.27■■□□□ 1.15
UBBP4-202ENST00000584755 SYNJ2O15056 1496 aa22.21■■□□□ 1.15
UBBP4-202ENST00000584755 GRIN2AQ12879 1464 aa22.2■■□□□ 1.14
UBBP4-202ENST00000584755 ARHGAP35Q9NRY4 1499 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms