RNA–Protein interactions for RNA: ENST00000347613.8

CLCN3-201, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLCN3, Length 3,635 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-201ENST00000347613 NISCHQ9Y2I1 1504 aa12.76□□□□□ -0.37
CLCN3-201ENST00000347613 SHROOM4Q9ULL8 1493 aa11.02□□□□□ -0.65
CLCN3-201ENST00000347613 ZCCHC6Q5VYS8 1495 aaKnown RBP10.78□□□□□ -0.68
CLCN3-201ENST00000347613 CCDC180Q9P1Z9 1646 aa10.76□□□□□ -0.69
CLCN3-201ENST00000347613 SUPT5HO00267 1087 aaKnown RBP10.73□□□□□ -0.69
CLCN3-201ENST00000347613 DCAF8L2P0C7V8 631 aa10.66□□□□□ -0.7
CLCN3-201ENST00000347613 MYO15BQ96JP2 1530 aa10.5□□□□□ -0.73
CLCN3-201ENST00000347613 CHIC1Q5VXU3 224 aa10.41□□□□□ -0.74
CLCN3-201ENST00000347613 DCAF1Q9Y4B6 1507 aa10.36□□□□□ -0.75
CLCN3-201ENST00000347613 SCRIBQ14160 1630 aa10.24□□□□□ -0.77
CLCN3-201ENST00000347613 LOC105371045A0A1W2PR82 267 aa10.22□□□□□ -0.77
CLCN3-201ENST00000347613 ABCC9O60706 1549 aa10.17□□□□□ -0.78
CLCN3-201ENST00000347613 RSF1Q96T23 1441 aaPredicted RBP10.14□□□□□ -0.79
CLCN3-201ENST00000347613 CECR2Q9BXF3 1484 aa10.08□□□□□ -0.8
CLCN3-201ENST00000347613 PCGF6Q9BYE7 350 aa10.08□□□□□ -0.8
CLCN3-201ENST00000347613 RB1CC1Q8TDY2 1594 aa10.07□□□□□ -0.8
CLCN3-201ENST00000347613 PPARGC1BQ86YN6 1023 aaKnown RBP10.01□□□□□ -0.81
CLCN3-201ENST00000347613 MROH2BQ7Z745 1585 aa10.01□□□□□ -0.81
CLCN3-201ENST00000347613 HRCP23327 699 aa10□□□□□ -0.81
CLCN3-201ENST00000347613 WIZO95785 1651 aa9.97□□□□□ -0.81
CLCN3-201ENST00000347613 EHMT2Q96KQ7 1210 aa9.96□□□□□ -0.81
CLCN3-201ENST00000347613 UNC13AQ9UPW8 1703 aa9.96□□□□□ -0.82
CLCN3-201ENST00000347613 FAM9AQ8IZU1 332 aaPredicted RBP9.95□□□□□ -0.82
CLCN3-201ENST00000347613 NACADO15069 1562 aa9.94□□□□□ -0.82
CLCN3-201ENST00000347613 TRIM41Q8WV44 630 aa9.9□□□□□ -0.83
CLCN3-201ENST00000347613 EIF4G1Q04637 1599 aaKnown RBP9.8□□□□□ -0.84
CLCN3-201ENST00000347613 BAZ1AQ9NRL2 1556 aaPredicted RBP9.78□□□□□ -0.84
CLCN3-201ENST00000347613 TRIM26Q12899 539 aaPredicted RBP9.77□□□□□ -0.85
CLCN3-201ENST00000347613 ABCC8Q09428 1581 aa9.76□□□□□ -0.85
CLCN3-201ENST00000347613 PABPN1Q86U42 306 aaKnown RBP eCLIP9.76□□□□□ -0.85
CLCN3-201ENST00000347613 SMARCA4P51532 1647 aa9.73□□□□□ -0.85
CLCN3-201ENST00000347613 CCDC88BA6NC98 1476 aa9.72□□□□□ -0.85
CLCN3-201ENST00000347613 BICRAQ9NZM4 1560 aa9.71□□□□□ -0.86
CLCN3-201ENST00000347613 SMARCA2P51531 1590 aa9.7□□□□□ -0.86
CLCN3-201ENST00000347613 TOP2AP11388 1531 aaKnown RBP9.68□□□□□ -0.86
CLCN3-201ENST00000347613 RUSC2Q8N2Y8 1516 aa9.67□□□□□ -0.86
CLCN3-201ENST00000347613 SLC24A1O60721 1099 aa9.65□□□□□ -0.86
CLCN3-201ENST00000347613 SOGA1O94964 1423 aa9.65□□□□□ -0.86
CLCN3-201ENST00000347613 TTBK1Q5TCY1 1321 aaPredicted RBP9.6□□□□□ -0.87
CLCN3-201ENST00000347613 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.53□□□□□ -0.88
CLCN3-201ENST00000347613 SYNJ1O43426 1573 aa9.51□□□□□ -0.89
CLCN3-201ENST00000347613 PEG3Q9GZU2 1588 aa9.5□□□□□ -0.89
CLCN3-201ENST00000347613 CEP162Q5TB80 1403 aa9.49□□□□□ -0.89
CLCN3-201ENST00000347613 ATAD2BQ9ULI0 1458 aa9.49□□□□□ -0.89
CLCN3-201ENST00000347613 CSRNP3Q8WYN3 585 aa9.47□□□□□ -0.89
CLCN3-201ENST00000347613 WRNQ14191 1432 aaPredicted RBP eCLIP9.45□□□□□ -0.9
CLCN3-201ENST00000347613 TNIKQ9UKE5 1360 aa9.43□□□□□ -0.9
CLCN3-201ENST00000347613 UBTFP17480 764 aaKnown RBP9.43□□□□□ -0.9
CLCN3-201ENST00000347613 BAZ1BQ9UIG0 1483 aaKnown RBP9.41□□□□□ -0.9
CLCN3-201ENST00000347613 RANGAP1P46060 587 aaPredicted RBP9.39□□□□□ -0.91
CLCN3-201ENST00000347613 ZEB1P37275 1124 aaPredicted RBP9.38□□□□□ -0.91
CLCN3-201ENST00000347613 RAPGEF2Q9Y4G8 1499 aa9.38□□□□□ -0.91
CLCN3-201ENST00000347613 CCER1Q8TC90 406 aaPredicted RBP9.37□□□□□ -0.91
CLCN3-201ENST00000347613 GOLGA3Q08378 1498 aa9.36□□□□□ -0.91
CLCN3-201ENST00000347613 EEA1Q15075 1411 aa9.32□□□□□ -0.92
CLCN3-201ENST00000347613 KIF21BO75037 1637 aa9.32□□□□□ -0.92
CLCN3-201ENST00000347613 TOP2BQ02880 1626 aa9.31□□□□□ -0.92
CLCN3-201ENST00000347613 SCAF1Q9H7N4 1312 aaKnown RBP9.3□□□□□ -0.92
CLCN3-201ENST00000347613 CLIP1P30622 1438 aa9.29□□□□□ -0.92
CLCN3-201ENST00000347613 CEP164Q9UPV0 1460 aa9.29□□□□□ -0.92
CLCN3-201ENST00000347613 CUX1P39880 1505 aa9.29□□□□□ -0.92
CLCN3-201ENST00000347613 HNRNPUL2Q1KMD3 747 aaKnown RBP9.28□□□□□ -0.92
CLCN3-201ENST00000347613 BIVM-ERCC5R4GMW8 1640 aa9.28□□□□□ -0.92
CLCN3-201ENST00000347613 NCAPD3P42695 1498 aa9.25□□□□□ -0.93
CLCN3-201ENST00000347613 KANK4Q5T7N3 995 aaPredicted RBP9.24□□□□□ -0.93
CLCN3-201ENST00000347613 VPS8Q8N3P4 1428 aa9.23□□□□□ -0.93
CLCN3-201ENST00000347613 ARAP1Q96P48 1450 aa9.22□□□□□ -0.93
CLCN3-201ENST00000347613 PRXQ9BXM0 1461 aa9.22□□□□□ -0.93
CLCN3-201ENST00000347613 HMGXB3Q12766 1538 aa9.22□□□□□ -0.93
CLCN3-201ENST00000347613 NEUROD1Q13562 356 aa9.2□□□□□ -0.94
CLCN3-201ENST00000347613 CFTRP13569 1480 aa9.2□□□□□ -0.94
CLCN3-201ENST00000347613 DIEXFQ68CQ4 756 aaKnown RBP9.19□□□□□ -0.94
CLCN3-201ENST00000347613 DNAJC5BQ9UF47 199 aa9.16□□□□□ -0.94
CLCN3-201ENST00000347613 ERICH3Q5RHP9 1530 aa9.14□□□□□ -0.95
CLCN3-201ENST00000347613 ARHGAP35Q9NRY4 1499 aa9.14□□□□□ -0.95
CLCN3-201ENST00000347613 IGF1RP08069 1367 aa9.12□□□□□ -0.95
CLCN3-201ENST00000347613 CC2D2AQ9P2K1 1620 aa9.11□□□□□ -0.95
CLCN3-201ENST00000347613 PRDM2Q13029 1718 aa9.11□□□□□ -0.95
CLCN3-201ENST00000347613 ZNF316A6NFI3 1004 aaPredicted RBP9.11□□□□□ -0.95
CLCN3-201ENST00000347613 KIF27Q86VH2 1401 aa9.1□□□□□ -0.95
CLCN3-201ENST00000347613 NESP48681 1621 aa9.1□□□□□ -0.95
CLCN3-201ENST00000347613 ACIN1Q9UKV3 1341 aaKnown RBP9.1□□□□□ -0.95
CLCN3-201ENST00000347613 CUX2O14529 1486 aa9.1□□□□□ -0.95
CLCN3-201ENST00000347613 MIER1Q8N108 512 aa9.1□□□□□ -0.95
CLCN3-201ENST00000347613 FGD5Q6ZNL6 1462 aa9.09□□□□□ -0.95
CLCN3-201ENST00000347613 CADPSQ9ULU8 1353 aa9.09□□□□□ -0.95
CLCN3-201ENST00000347613 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
CLCN3-201ENST00000347613 DHX57Q6P158 1386 aaKnown RBP9.08□□□□□ -0.96
CLCN3-201ENST00000347613 RAD54L2Q9Y4B4 1467 aa9.08□□□□□ -0.96
CLCN3-201ENST00000347613 P3H3Q8IVL6 736 aa9.07□□□□□ -0.96
CLCN3-201ENST00000347613 APLP2Q06481 763 aa9.06□□□□□ -0.96
CLCN3-201ENST00000347613 ITGAEP38570 1179 aa9.06□□□□□ -0.96
CLCN3-201ENST00000347613 YTHDC1Q96MU7 727 aaKnown RBP9.05□□□□□ -0.96
CLCN3-201ENST00000347613 GTF3C3Q9Y5Q9 886 aa9.04□□□□□ -0.96
CLCN3-201ENST00000347613 RRBP1Q9P2E9 1410 aaKnown RBP9.03□□□□□ -0.96
CLCN3-201ENST00000347613 CARMIL1Q5VZK9 1371 aa9.03□□□□□ -0.96
CLCN3-201ENST00000347613 FANCD2Q9BXW9 1451 aa9.02□□□□□ -0.97
CLCN3-201ENST00000347613 PHLDB1Q86UU1 1377 aa9□□□□□ -0.97
CLCN3-201ENST00000347613 POLA1P09884 1462 aaPredicted RBP8.99□□□□□ -0.97
CLCN3-201ENST00000347613 TIAM1Q13009 1591 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms