RNA–Protein interactions for RNA: ENST00000545170.5

ATXN3-216, Transcript of ataxin 3, humanhuman

TSL 5 BASIC

Gene ATXN3, Length 6,950 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-216ENST00000545170 PELP1Q8IZL8 1130 aaKnown RBP14.34□□□□□ -0.11
ATXN3-216ENST00000545170 MYT1Q01538 1121 aa14.21□□□□□ -0.14
ATXN3-216ENST00000545170 ERICH6Q7L0X2 663 aa13.91□□□□□ -0.18
ATXN3-216ENST00000545170 CCER1Q8TC90 406 aaPredicted RBP13.64□□□□□ -0.23
ATXN3-216ENST00000545170 CENPBP07199 599 aaPredicted RBP13.61□□□□□ -0.23
ATXN3-216ENST00000545170 DCAF8L2P0C7V8 631 aa13.54□□□□□ -0.24
ATXN3-216ENST00000545170 SUPT5HO00267 1087 aaKnown RBP13.42□□□□□ -0.26
ATXN3-216ENST00000545170 TTBK1Q5TCY1 1321 aaPredicted RBP13.39□□□□□ -0.27
ATXN3-216ENST00000545170 PCGF6Q9BYE7 350 aa13.34□□□□□ -0.27
ATXN3-216ENST00000545170 EHMT2Q96KQ7 1210 aa13.32□□□□□ -0.28
ATXN3-216ENST00000545170 YTHDC1Q96MU7 727 aaKnown RBP13.23□□□□□ -0.29
ATXN3-216ENST00000545170 ZEB1P37275 1124 aaPredicted RBP13.21□□□□□ -0.29
ATXN3-216ENST00000545170 NEFLP07196 543 aa13.2□□□□□ -0.3
ATXN3-216ENST00000545170 APLP2Q06481 763 aa12.99□□□□□ -0.33
ATXN3-216ENST00000545170 DAXXQ9UER7 740 aaPredicted RBP12.96□□□□□ -0.33
ATXN3-216ENST00000545170 SHROOM4Q9ULL8 1493 aa12.89□□□□□ -0.35
ATXN3-216ENST00000545170 RTL5Q5HYW3 569 aaPredicted RBP12.89□□□□□ -0.35
ATXN3-216ENST00000545170 HRCP23327 699 aa12.81□□□□□ -0.36
ATXN3-216ENST00000545170 FAM9AQ8IZU1 332 aaPredicted RBP12.75□□□□□ -0.37
ATXN3-216ENST00000545170 ZNF316A6NFI3 1004 aaPredicted RBP12.68□□□□□ -0.38
ATXN3-216ENST00000545170 EIF5BO60841 1220 aaKnown RBP12.63□□□□□ -0.39
ATXN3-216ENST00000545170 PPARGC1BQ86YN6 1023 aaKnown RBP12.61□□□□□ -0.39
ATXN3-216ENST00000545170 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
ATXN3-216ENST00000545170 GLIPR1L2Q4G1C9 344 aa12.56□□□□□ -0.4
ATXN3-216ENST00000545170 TRIM26Q12899 539 aaPredicted RBP12.53□□□□□ -0.4
ATXN3-216ENST00000545170 RANGAP1P46060 587 aaPredicted RBP12.47□□□□□ -0.41
ATXN3-216ENST00000545170 BCANQ96GW7 911 aa12.47□□□□□ -0.41
ATXN3-216ENST00000545170 DIEXFQ68CQ4 756 aaKnown RBP12.45□□□□□ -0.42
ATXN3-216ENST00000545170 CLSPNQ9HAW4 1339 aa12.4□□□□□ -0.42
ATXN3-216ENST00000545170 CDK11AQ9UQ88 783 aaPredicted RBP12.4□□□□□ -0.42
ATXN3-216ENST00000545170 ATP1B4Q9UN42 357 aaPredicted RBP12.34□□□□□ -0.43
ATXN3-216ENST00000545170 POLR3GLQ9BT43 218 aa12.31□□□□□ -0.44
ATXN3-216ENST00000545170 TRIM41Q8WV44 630 aa12.31□□□□□ -0.44
ATXN3-216ENST00000545170 ACIN1Q9UKV3 1341 aaKnown RBP12.29□□□□□ -0.44
ATXN3-216ENST00000545170 CNGB1Q14028 1251 aaPredicted RBP12.28□□□□□ -0.44
ATXN3-216ENST00000545170 UBTFP17480 764 aaKnown RBP12.24□□□□□ -0.45
ATXN3-216ENST00000545170 ANP32AP39687 249 aaKnown RBP12.23□□□□□ -0.45
ATXN3-216ENST00000545170 MYT1LQ9UL68 1186 aa12.22□□□□□ -0.45
ATXN3-216ENST00000545170 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.15□□□□□ -0.46
ATXN3-216ENST00000545170 NBR1Q14596 966 aa12.15□□□□□ -0.46
ATXN3-216ENST00000545170 NPM2Q86SE8 214 aaKnown RBP12.14□□□□□ -0.47
ATXN3-216ENST00000545170 ANP32BQ92688 251 aaKnown RBP12.11□□□□□ -0.47
ATXN3-216ENST00000545170 NISCHQ9Y2I1 1504 aa12.11□□□□□ -0.47
ATXN3-216ENST00000545170 ITGAEP38570 1179 aa12.09□□□□□ -0.47
ATXN3-216ENST00000545170 HNRNPUL2Q1KMD3 747 aaKnown RBP12.09□□□□□ -0.47
ATXN3-216ENST00000545170 BCL11AQ9H165 835 aa12.06□□□□□ -0.48
ATXN3-216ENST00000545170 SCAF1Q9H7N4 1312 aaKnown RBP12.03□□□□□ -0.48
ATXN3-216ENST00000545170 LOC105371045A0A1W2PR82 267 aa12□□□□□ -0.49
ATXN3-216ENST00000545170 ANP32EQ9BTT0 268 aa12□□□□□ -0.49
ATXN3-216ENST00000545170 FKBP8Q14318 412 aa11.98□□□□□ -0.49
ATXN3-216ENST00000545170 ANP32CO43423 234 aa11.98□□□□□ -0.49
ATXN3-216ENST00000545170 ARXQ96QS3 562 aa11.98□□□□□ -0.49
ATXN3-216ENST00000545170 TNNT2P45379 298 aaPredicted RBP11.97□□□□□ -0.49
ATXN3-216ENST00000545170 ZBTB47Q9UFB7 747 aaPredicted RBP11.94□□□□□ -0.5
ATXN3-216ENST00000545170 SLC4A1APQ9BWU0 796 aaKnown RBP11.93□□□□□ -0.5
ATXN3-216ENST00000545170 RTN4Q9NQC3 1192 aaKnown RBP11.92□□□□□ -0.5
ATXN3-216ENST00000545170 NEUROD1Q13562 356 aa11.9□□□□□ -0.5
ATXN3-216ENST00000545170 CDK11BP21127 795 aaKnown RBP11.87□□□□□ -0.51
ATXN3-216ENST00000545170 CANXP27824 592 aaKnown RBP11.87□□□□□ -0.51
ATXN3-216ENST00000545170 HSP90AA1P07900 732 aaKnown RBP11.84□□□□□ -0.51
ATXN3-216ENST00000545170 AMER1Q5JTC6 1135 aaPredicted RBP11.84□□□□□ -0.51
ATXN3-216ENST00000545170 NAP1L5Q96NT1 182 aaPredicted RBP11.84□□□□□ -0.51
ATXN3-216ENST00000545170 TRIM44Q96DX7 344 aaPredicted RBP11.79□□□□□ -0.52
ATXN3-216ENST00000545170 UPF2Q9HAU5 1272 aaKnown RBP11.76□□□□□ -0.53
ATXN3-216ENST00000545170 ERICH6BQ5W0A0 696 aa11.74□□□□□ -0.53
ATXN3-216ENST00000545170 CHIC1Q5VXU3 224 aa11.73□□□□□ -0.53
ATXN3-216ENST00000545170 NEFMP07197 916 aa11.72□□□□□ -0.53
ATXN3-216ENST00000545170 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.7□□□□□ -0.54
ATXN3-216ENST00000545170 CCDC136Q96JN2 1154 aa11.68□□□□□ -0.54
ATXN3-216ENST00000545170 DEKP35659 375 aaKnown RBP11.66□□□□□ -0.54
ATXN3-216ENST00000545170 DDRGK1Q96HY6 314 aa11.65□□□□□ -0.54
ATXN3-216ENST00000545170 DNTTIP2Q5QJE6 756 aaKnown RBP11.64□□□□□ -0.55
ATXN3-216ENST00000545170 NCLP19338 710 aaKnown RBP11.64□□□□□ -0.55
ATXN3-216ENST00000545170 FAM50AQ14320 339 aaKnown RBP11.64□□□□□ -0.55
ATXN3-216ENST00000545170 HNRNPUQ00839 825 aaKnown RBP eCLIP11.64□□□□□ -0.55
ATXN3-216ENST00000545170 TRIM52Q96A61 297 aa11.63□□□□□ -0.55
ATXN3-216ENST00000545170 IRX6P78412 446 aaPredicted RBP11.62□□□□□ -0.55
ATXN3-216ENST00000545170 ZNF326Q5BKZ1 582 aaKnown RBP11.59□□□□□ -0.55
ATXN3-216ENST00000545170 PTMAP06454 111 aaKnown RBP11.59□□□□□ -0.55
ATXN3-216ENST00000545170 ARID4BQ4LE39 1312 aaPredicted RBP11.57□□□□□ -0.56
ATXN3-216ENST00000545170 LAS1LQ9Y4W2 734 aaKnown RBP11.57□□□□□ -0.56
ATXN3-216ENST00000545170 NOP58Q9Y2X3 529 aaKnown RBP11.56□□□□□ -0.56
ATXN3-216ENST00000545170 SLC24A1O60721 1099 aa11.56□□□□□ -0.56
ATXN3-216ENST00000545170 PPM1GO15355 546 aaPredicted RBP11.56□□□□□ -0.56
ATXN3-216ENST00000545170 BECN1Q14457 450 aa11.55□□□□□ -0.56
ATXN3-216ENST00000545170 FAM9BQ8IZU0 186 aa11.55□□□□□ -0.56
ATXN3-216ENST00000545170 CSRNP3Q8WYN3 585 aa11.51□□□□□ -0.57
ATXN3-216ENST00000545170 MIER1Q8N108 512 aa11.5□□□□□ -0.57
ATXN3-216ENST00000545170 GOLGA6L22H0YM25 854 aa11.5□□□□□ -0.57
ATXN3-216ENST00000545170 ARID3AQ99856 593 aa11.47□□□□□ -0.57
ATXN3-216ENST00000545170 SALL2Q9Y467 1007 aaPredicted RBP11.47□□□□□ -0.57
ATXN3-216ENST00000545170 DDX10Q13206 875 aaKnown RBP11.47□□□□□ -0.57
ATXN3-216ENST00000545170 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.47□□□□□ -0.57
ATXN3-216ENST00000545170 TNNT3P45378 269 aaPredicted RBP11.46□□□□□ -0.58
ATXN3-216ENST00000545170 VSIG10Q8N0Z9 540 aa11.44□□□□□ -0.58
ATXN3-216ENST00000545170 MSNP26038 577 aaKnown RBP11.43□□□□□ -0.58
ATXN3-216ENST00000545170 L1TD1Q5T7N2 865 aaKnown RBP11.41□□□□□ -0.58
ATXN3-216ENST00000545170 SUPT16HQ9Y5B9 1047 aaKnown RBP11.4□□□□□ -0.58
ATXN3-216ENST00000545170 TPRNQ4KMQ1 711 aa11.4□□□□□ -0.59
ATXN3-216ENST00000545170 CHAF1AQ13111 956 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms