RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 AEBP2Q6ZN18 517 aaPredicted RBP22.26■■□□□ 1.15
NUP54-208ENST00000508604 CHIC1Q5VXU3 224 aa21.23■□□□□ 0.99
NUP54-208ENST00000508604 SENP3Q9H4L4 574 aaPredicted RBP19.13■□□□□ 0.65
NUP54-208ENST00000508604 PHF23Q9BUL5 403 aaPredicted RBP18.83■□□□□ 0.61
NUP54-208ENST00000508604 FOXD1Q16676 465 aa17.74■□□□□ 0.43
NUP54-208ENST00000508604 PLPPR3Q6T4P5 718 aa17.04■□□□□ 0.32
NUP54-208ENST00000508604 MSH5O43196 834 aa16.71■□□□□ 0.27
NUP54-208ENST00000508604 PIAS4Q8N2W9 510 aaPredicted RBP16.65■□□□□ 0.26
NUP54-208ENST00000508604 PPP6R1Q9UPN7 881 aa16.55■□□□□ 0.24
NUP54-208ENST00000508604 ADRA2BP18089 450 aa16.54■□□□□ 0.24
NUP54-208ENST00000508604 POTEDQ86YR6 584 aa16.2■□□□□ 0.18
NUP54-208ENST00000508604 SCAF1Q9H7N4 1312 aaKnown RBP15.3■□□□□ 0.04
NUP54-208ENST00000508604 MAPK8IP2Q13387 824 aaPredicted RBP15.16■□□□□ 0.02
NUP54-208ENST00000508604 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
NUP54-208ENST00000508604 PPP4R3CPQ6ZMV5 832 aa14.9□□□□□ -0.02
NUP54-208ENST00000508604 CNKSR2Q8WXI2 1034 aa14.65□□□□□ -0.06
NUP54-208ENST00000508604 DCAF8L1A6NGE4 600 aa14.6□□□□□ -0.07
NUP54-208ENST00000508604 HOXD11P31277 338 aaPredicted RBP14.56□□□□□ -0.08
NUP54-208ENST00000508604 RNF216Q9NWF9 866 aaPredicted RBP14.49□□□□□ -0.09
NUP54-208ENST00000508604 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
NUP54-208ENST00000508604 CACNB1Q02641 598 aaPredicted RBP14.33□□□□□ -0.11
NUP54-208ENST00000508604 RNF39Q9H2S5 420 aa14.18□□□□□ -0.14
NUP54-208ENST00000508604 DNAJC5BQ9UF47 199 aa14.1□□□□□ -0.15
NUP54-208ENST00000508604 NPM3O75607 178 aaKnown RBP14.09□□□□□ -0.15
NUP54-208ENST00000508604 C1QBPQ07021 282 aaKnown RBP14.04□□□□□ -0.16
NUP54-208ENST00000508604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.97□□□□□ -0.17
NUP54-208ENST00000508604 KCNA4P22459 653 aa13.82□□□□□ -0.2
NUP54-208ENST00000508604 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
NUP54-208ENST00000508604 CAPN15O75808 1086 aa13.44□□□□□ -0.26
NUP54-208ENST00000508604 SLC4A2P04920 1241 aa13.41□□□□□ -0.26
NUP54-208ENST00000508604 APLP2Q06481 763 aa13.39□□□□□ -0.27
NUP54-208ENST00000508604 SPINK5Q9NQ38 1064 aaPredicted RBP13.37□□□□□ -0.27
NUP54-208ENST00000508604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
NUP54-208ENST00000508604 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
NUP54-208ENST00000508604 DSG3P32926 999 aa13.28□□□□□ -0.28
NUP54-208ENST00000508604 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
NUP54-208ENST00000508604 TRHP20396 242 aaPredicted RBP13.22□□□□□ -0.29
NUP54-208ENST00000508604 ZNF219Q9P2Y4 722 aaPredicted RBP13.22□□□□□ -0.29
NUP54-208ENST00000508604 SLC4A1APQ9BWU0 796 aaKnown RBP13.12□□□□□ -0.31
NUP54-208ENST00000508604 MYCNP04198 464 aaPredicted RBP13.11□□□□□ -0.31
NUP54-208ENST00000508604 ABCB7O75027 752 aa13.08□□□□□ -0.31
NUP54-208ENST00000508604 FOXD4L1Q9NU39 408 aa12.96□□□□□ -0.34
NUP54-208ENST00000508604 POLA2Q14181 598 aa12.84□□□□□ -0.35
NUP54-208ENST00000508604 RBM42Q9BTD8 480 aaKnown RBP12.79□□□□□ -0.36
NUP54-208ENST00000508604 POTEHQ6S545 545 aa12.73□□□□□ -0.37
NUP54-208ENST00000508604 ATF5Q9Y2D1 282 aaPredicted RBP12.68□□□□□ -0.38
NUP54-208ENST00000508604 ZBTB12Q9Y330 459 aaPredicted RBP12.67□□□□□ -0.38
NUP54-208ENST00000508604 ZBTB22O15209 634 aa12.64□□□□□ -0.39
NUP54-208ENST00000508604 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
NUP54-208ENST00000508604 AKT1S1Q96B36 256 aa12.45□□□□□ -0.42
NUP54-208ENST00000508604 CHRDL2Q6WN34 429 aa12.43□□□□□ -0.42
NUP54-208ENST00000508604 OSCARQ8IYS5 282 aa12.41□□□□□ -0.42
NUP54-208ENST00000508604 FBLN2P98095 1184 aa12.37□□□□□ -0.43
NUP54-208ENST00000508604 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
NUP54-208ENST00000508604 SPDYE2BA6NHP3 402 aa12.22□□□□□ -0.45
NUP54-208ENST00000508604 SPDYE6P0CI01 402 aa12.22□□□□□ -0.45
NUP54-208ENST00000508604 SPDYE2Q495Y8 402 aa12.22□□□□□ -0.45
NUP54-208ENST00000508604 PITPNM1O00562 1244 aa12.15□□□□□ -0.46
NUP54-208ENST00000508604 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
NUP54-208ENST00000508604 CSRNP3Q8WYN3 585 aa12.11□□□□□ -0.47
NUP54-208ENST00000508604 MKRN4PQ13434 485 aaPredicted RBP12.1□□□□□ -0.47
NUP54-208ENST00000508604 ZNF692Q9BU19 519 aaPredicted RBP12.09□□□□□ -0.47
NUP54-208ENST00000508604 FXR2P51116 673 aaKnown RBP eCLIP12.04□□□□□ -0.48
NUP54-208ENST00000508604 SPDYE1Q8NFV5 336 aaPredicted RBP12.03□□□□□ -0.48
NUP54-208ENST00000508604 EHMT2Q96KQ7 1210 aa12.03□□□□□ -0.48
NUP54-208ENST00000508604 CLEC11AQ9Y240 323 aa12.01□□□□□ -0.49
NUP54-208ENST00000508604 SSUH2Q9Y2M2 353 aa12□□□□□ -0.49
NUP54-208ENST00000508604 HAX1O00165 279 aa11.97□□□□□ -0.49
NUP54-208ENST00000508604 SP7Q8TDD2 431 aaPredicted RBP11.95□□□□□ -0.5
NUP54-208ENST00000508604 PRKAR2AP13861 404 aaKnown RBP11.88□□□□□ -0.51
NUP54-208ENST00000508604 PABPN1Q86U42 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
NUP54-208ENST00000508604 PRR29P0C7W0 189 aa11.82□□□□□ -0.52
NUP54-208ENST00000508604 CHADLQ6NUI6 762 aa11.71□□□□□ -0.54
NUP54-208ENST00000508604 EVX2Q03828 476 aa11.67□□□□□ -0.54
NUP54-208ENST00000508604 C19orf67A6NJJ6 358 aa11.65□□□□□ -0.54
NUP54-208ENST00000508604 SPDYE4A6NLX3 237 aa11.64□□□□□ -0.55
NUP54-208ENST00000508604 STAG3Q9UJ98 1225 aa11.64□□□□□ -0.55
NUP54-208ENST00000508604 FARP1Q9Y4F1 1045 aaPredicted RBP11.56□□□□□ -0.56
NUP54-208ENST00000508604 CD44P16070 742 aaKnown RBP11.51□□□□□ -0.57
NUP54-208ENST00000508604 GABBR2O75899 941 aa11.49□□□□□ -0.57
NUP54-208ENST00000508604 CREBZFQ9NS37 354 aa11.43□□□□□ -0.58
NUP54-208ENST00000508604 CLCN6P51797 869 aa11.43□□□□□ -0.58
NUP54-208ENST00000508604 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
NUP54-208ENST00000508604 NPM1P06748 294 aaKnown RBP eCLIP11.36□□□□□ -0.59
NUP54-208ENST00000508604 ZRANB1Q9UGI0 708 aa11.36□□□□□ -0.59
NUP54-208ENST00000508604 ZNF579Q8NAF0 562 aaKnown RBP11.3□□□□□ -0.6
NUP54-208ENST00000508604 DCBLD2Q96PD2 775 aa11.27□□□□□ -0.6
NUP54-208ENST00000508604 PROM2Q8N271 834 aa11.27□□□□□ -0.61
NUP54-208ENST00000508604 PLEKHG5O94827 1062 aa11.24□□□□□ -0.61
NUP54-208ENST00000508604 LHX8Q68G74 356 aa11.22□□□□□ -0.61
NUP54-208ENST00000508604 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
NUP54-208ENST00000508604 POTEIP0CG38 1075 aa11.17□□□□□ -0.62
NUP54-208ENST00000508604 MIER1Q8N108 512 aa11.15□□□□□ -0.62
NUP54-208ENST00000508604 PHF12Q96QT6 1004 aa11.14□□□□□ -0.63
NUP54-208ENST00000508604 GALR2O43603 387 aaPredicted RBP11.14□□□□□ -0.63
NUP54-208ENST00000508604 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
NUP54-208ENST00000508604 PLCD3Q8N3E9 789 aa11.08□□□□□ -0.64
NUP54-208ENST00000508604 FKBP8Q14318 412 aa11.06□□□□□ -0.64
NUP54-208ENST00000508604 ZBTB47Q9UFB7 747 aaPredicted RBP11.04□□□□□ -0.64
NUP54-208ENST00000508604 MS4A3Q96HJ5 214 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms