Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MLF1-202ENST00000359117 2222 ntTSL 1 (best) BASIC12.44□□□□□ -0.425e-7■■■■□ 24.5
YBX3P16989 MLF1-209ENST00000482628 1050 ntTSL 5 BASIC12.06□□□□□ -0.485e-7■■■■□ 24.5
YBX3P16989 MLF1-213ENST00000495452 742 ntTSL 311.55□□□□□ -0.565e-7■■■■□ 24.5
YBX3P16989 MLF1-214ENST00000497004 3048 ntTSL 1 (best)9.54□□□□□ -0.885e-7■■■■□ 24.5
YBX3P16989 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC8.75□□□□□ -1.015e-7■■■■□ 24.5
YBX3P16989 MLF1-207ENST00000477042 750 ntTSL 56.68□□□□□ -1.345e-7■■■■□ 24.5
YBX3P16989 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.848e-8■■■■□ 24.5
YBX3P16989 NSFL1C-212ENST00000555568 863 ntTSL 324.78■■□□□ 1.561e-6■■■■□ 24.5
YBX3P16989 AGBL5-205ENST00000441931 481 ntTSL 214.59□□□□□ -0.072e-7■■■■□ 24.5
YBX3P16989 ASF1A-202ENST00000511766 573 ntTSL 221.2■□□□□ 0.983e-6■■■■□ 24.5
YBX3P16989 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.043e-6■■■■□ 24.5
YBX3P16989 PRMT3-201ENST00000330796 2530 ntTSL 1 (best)15.62■□□□□ 0.096e-7■■■■□ 24.5
YBX3P16989 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.146e-7■■■■□ 24.5
YBX3P16989 PRMT3-203ENST00000437750 1736 ntTSL 2 BASIC12.39□□□□□ -0.436e-7■■■■□ 24.5
YBX3P16989 PRMT3-206ENST00000529592 4159 ntTSL 26.2□□□□□ -1.426e-7■■■■□ 24.5
YBX3P16989 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.31■□□□□ 0.369e-7■■■■□ 24.5
YBX3P16989 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.18□□□□□ -1.99e-7■■■■□ 24.5
YBX3P16989 MRPS27-204ENST00000508863 956 ntTSL 317.53■□□□□ 0.43e-7■■■■□ 24.4
YBX3P16989 MRPS27-205ENST00000513900 1369 ntTSL 2 BASIC13.32□□□□□ -0.283e-7■■■■□ 24.4
YBX3P16989 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.113e-7■■■■□ 24.4
YBX3P16989 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC7.81□□□□□ -1.163e-7■■■■□ 24.4
YBX3P16989 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC27.73■■■□□ 2.038e-8■■■■□ 24.4
YBX3P16989 C19orf47-205ENST00000580977 563 ntTSL 420.35■□□□□ 0.858e-8■■■■□ 24.4
YBX3P16989 C19orf47-201ENST00000357884 1774 ntTSL 519.55■□□□□ 0.728e-8■■■■□ 24.4
YBX3P16989 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.281e-7■■■■□ 24.4
YBX3P16989 C19orf47-206ENST00000582006 581 ntAPPRIS ALT2 TSL 415.52■□□□□ 0.088e-8■■■■□ 24.4
YBX3P16989 C19orf47-204ENST00000580606 803 ntAPPRIS ALT2 TSL 315.24■□□□□ 0.038e-8■■■■□ 24.4
YBX3P16989 CD3D-201ENST00000300692 861 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.038e-8■■■■□ 24.4
YBX3P16989 C19orf47-208ENST00000582783 3628 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.298e-8■■■■□ 24.4
YBX3P16989 CD3D-204ENST00000529594 422 ntTSL 1 (best) BASIC12.16□□□□□ -0.468e-8■■■■□ 24.4
YBX3P16989 RDH10-204ENST00000521013 1367 ntTSL 29.06□□□□□ -0.961e-7■■■■□ 24.4
YBX3P16989 STAMBP-210ENST00000487811 695 ntTSL 38.47□□□□□ -1.058e-8■■■■□ 24.4
YBX3P16989 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.118e-8■■■■□ 24.4
YBX3P16989 Y_RNA.517-201ENST00000384551 106 ntBASIC7.12□□□□□ -1.278e-8■■■■□ 24.4
YBX3P16989 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.06□□□□□ -1.448e-8■■■■□ 24.4
YBX3P16989 CD3D-205ENST00000534687 483 ntTSL 25.78□□□□□ -1.488e-8■■■■□ 24.4
YBX3P16989 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.26□□□□□ -1.578e-8■■■■□ 24.4
YBX3P16989 CD3D-203ENST00000526561 257 ntTSL 25.14□□□□□ -1.598e-8■■■■□ 24.4
YBX3P16989 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.45■□□□□ 0.542e-6■■■■□ 24.4
YBX3P16989 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.282e-6■■■■□ 24.4
YBX3P16989 EXT2-201ENST00000343631 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.422e-6■■■■□ 24.4
YBX3P16989 EXT2-203ENST00000395673 3454 ntTSL 1 (best) BASIC9.86□□□□□ -0.832e-6■■■■□ 24.4
YBX3P16989 SNX5-208ENST00000475716 715 ntTSL 314.51□□□□□ -0.097e-7■■■■□ 24.4
YBX3P16989 GCSH-203ENST00000564386 975 ntTSL 227.75■■■□□ 2.034e-11■■■■□ 24.4
YBX3P16989 GCSH-202ENST00000561801 403 ntTSL 326.89■■□□□ 1.94e-11■■■■□ 24.4
YBX3P16989 GCSH-204ENST00000564477 792 ntTSL 525.66■■□□□ 1.74e-11■■■■□ 24.4
YBX3P16989 AC092718.8-202ENST00000638192 610 ntTSL 525.31■■□□□ 1.644e-11■■■■□ 24.4
YBX3P16989 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.584e-11■■■■□ 24.4
YBX3P16989 AC092718.3-201ENST00000638948 887 ntAPPRIS ALT2 TSL 524.64■■□□□ 1.544e-11■■■■□ 24.4
YBX3P16989 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.34e-11■■■■□ 24.4
YBX3P16989 GCSH-206ENST00000569885 647 ntTSL 321.94■■□□□ 1.14e-11■■■■□ 24.4
YBX3P16989 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.92■□□□□ 0.784e-11■■■■□ 24.4
YBX3P16989 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC19.15■□□□□ 0.664e-11■■■■□ 24.4
YBX3P16989 AC092718.3-203ENST00000640370 2497 ntTSL 518.43■□□□□ 0.544e-11■■■■□ 24.4
YBX3P16989 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.134e-11■■■■□ 24.4
YBX3P16989 FTH1P10-201ENST00000401830 930 ntBASIC10.84□□□□□ -0.671e-6■■■■□ 24.3
YBX3P16989 FTH1P10-202ENST00000430907 550 ntBASIC7.76□□□□□ -1.171e-6■■■■□ 24.3
YBX3P16989 ACTN1-220ENST00000556433 1259 ntTSL 330.64■■■□□ 2.53e-6■■■■□ 24.3
YBX3P16989 ACTN1-208ENST00000553370 605 ntTSL 313.57□□□□□ -0.243e-6■■■■□ 24.3
YBX3P16989 ACTN1-215ENST00000555616 919 ntTSL 312.67□□□□□ -0.383e-6■■■■□ 24.3
YBX3P16989 ACTN1-213ENST00000554508 585 ntTSL 411.56□□□□□ -0.563e-6■■■■□ 24.3
YBX3P16989 ACTN1-212ENST00000554158 571 ntTSL 411.36□□□□□ -0.593e-6■■■■□ 24.3
YBX3P16989 COPS3-211ENST00000495640 333 ntTSL 34.35□□□□□ -1.719e-7■■■■□ 24.3
YBX3P16989 SHANK2-220ENST00000608988 1879 ntTSL 522.77■■□□□ 1.241e-6■■■■□ 24.3
YBX3P16989 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.994e-7■■■■□ 24.3
YBX3P16989 RNF6-204ENST00000468480 1105 ntTSL 1 (best)21.78■■□□□ 1.083e-7■■■■□ 24.3
YBX3P16989 RNF6-203ENST00000381588 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.473e-7■■■■□ 24.3
YBX3P16989 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.343e-7■■■■□ 24.3
YBX3P16989 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.683e-7■■■■□ 24.3
YBX3P16989 ATG4C-205ENST00000443289 603 ntTSL 221.68■■□□□ 1.062e-7■■■■□ 24.3
YBX3P16989 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.122e-7■■■■□ 24.3
YBX3P16989 ATG4C-203ENST00000371120 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.172e-7■■■■□ 24.3
YBX3P16989 ATG4C-202ENST00000371118 665 ntTSL 59.22□□□□□ -0.932e-7■■■■□ 24.3
YBX3P16989 HDLBP-224ENST00000452065 996 ntTSL 514.01□□□□□ -0.175e-10■■■■□ 24.3
YBX3P16989 HDLBP-219ENST00000442714 569 ntTSL 414.01□□□□□ -0.175e-10■■■■□ 24.3
YBX3P16989 HDLBP-216ENST00000428482 1096 ntTSL 513.58□□□□□ -0.245e-10■■■■□ 24.3
YBX3P16989 HDLBP-209ENST00000422933 929 ntTSL 312.51□□□□□ -0.415e-10■■■■□ 24.3
YBX3P16989 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.152e-7■■■■□ 24.3
YBX3P16989 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.649e-9■■■■□ 24.2
YBX3P16989 ATP2A2-202ENST00000313432 5575 ntTSL 1 (best)9.16□□□□□ -0.941e-9■■■■□ 24.2
YBX3P16989 ATP2A2-212ENST00000553144 264 ntTSL 1 (best)5.6□□□□□ -1.511e-9■■■■□ 24.2
YBX3P16989 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.92e-12■■■■□ 24.2
YBX3P16989 AC132217.1-201ENST00000430034 373 ntTSL 3 BASIC11.61□□□□□ -0.551e-323■■■■□ 24.2
YBX3P16989 CACYBP-208ENST00000483307 688 ntTSL 227.64■■■□□ 2.029e-15■■■■□ 24.2
YBX3P16989 CACYBP-204ENST00000426793 499 ntTSL 318.51■□□□□ 0.559e-15■■■■□ 24.2
YBX3P16989 CACYBP-205ENST00000461977 574 ntTSL 211.05□□□□□ -0.649e-15■■■■□ 24.2
YBX3P16989 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.29□□□□□ -1.49e-15■■■■□ 24.2
YBX3P16989 RAB5C-208ENST00000551338 560 ntTSL 212.7□□□□□ -0.382e-8■■■■□ 24.2
YBX3P16989 TMEM98-201ENST00000261713 826 ntTSL 334.99■■■■□ 3.191e-7■■■■□ 24.2
YBX3P16989 TMEM98-203ENST00000395149 808 ntTSL 233.91■■■■□ 3.021e-7■■■■□ 24.2
YBX3P16989 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.031e-7■■■■□ 24.2
YBX3P16989 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.941e-7■■■■□ 24.2
YBX3P16989 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.42■□□□□ 0.541e-7■■■■□ 24.2
YBX3P16989 TMEM98-204ENST00000439138 896 ntTSL 317.01■□□□□ 0.311e-7■■■■□ 24.2
YBX3P16989 TMEM98-208ENST00000583120 504 ntTSL 216.9■□□□□ 0.31e-7■■■■□ 24.2
YBX3P16989 TMEM98-209ENST00000583437 776 ntTSL 316.9■□□□□ 0.31e-7■■■■□ 24.2
YBX3P16989 TMEM98-207ENST00000582227 424 ntTSL 516.4■□□□□ 0.221e-7■■■■□ 24.2
YBX3P16989 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC19.91■□□□□ 0.782e-7■■■■□ 24.2
YBX3P16989 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.172e-7■■■■□ 24.2
YBX3P16989 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.81e-7■■■■□ 24.2
Retrieved 100 of 29,075 protein–RNA pairs in 752.2 ms