RNA–Protein interactions for RNA: ENST00000564386.6

GCSH-203, Transcript of glycine cleavage system protein H, humanhuman

TSL 2

Gene GCSH, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCSH-203ENST00000564386 NISCHQ9Y2I1 1504 aa52.35■■■■■ 5.97
GCSH-203ENST00000564386 CCDC180Q9P1Z9 1646 aa46.65■■■■■ 5.06
GCSH-203ENST00000564386 ABCC9O60706 1549 aa45.45■■■■■ 4.87
GCSH-203ENST00000564386 RB1CC1Q8TDY2 1594 aa43.83■■■■■ 4.61
GCSH-203ENST00000564386 NACADO15069 1562 aa43.78■■■■■ 4.6
GCSH-203ENST00000564386 ZCCHC6Q5VYS8 1495 aaKnown RBP43.64■■■■■ 4.58
GCSH-203ENST00000564386 DCAF8L2P0C7V8 631 aa43.63■■■■■ 4.57
GCSH-203ENST00000564386 MYO15BQ96JP2 1530 aa43.51■■■■■ 4.56
GCSH-203ENST00000564386 DCAF1Q9Y4B6 1507 aa43.35■■■■■ 4.53
GCSH-203ENST00000564386 UNC13AQ9UPW8 1703 aa42.91■■■■■ 4.46
GCSH-203ENST00000564386 SCRIBQ14160 1630 aa42.49■■■■■ 4.39
GCSH-203ENST00000564386 BICRAQ9NZM4 1560 aa42.45■■■■■ 4.39
GCSH-203ENST00000564386 PABPN1Q86U42 306 aaKnown RBP eCLIP42.4■■■■■ 4.38
GCSH-203ENST00000564386 SHROOM4Q9ULL8 1493 aa42.07■■■■■ 4.33
GCSH-203ENST00000564386 DNAJC5BQ9UF47 199 aa41.54■■■■■ 4.24
GCSH-203ENST00000564386 EIF4G1Q04637 1599 aaKnown RBP41.34■■■■■ 4.21
GCSH-203ENST00000564386 CC2D2AQ9P2K1 1620 aa41.17■■■■■ 4.18
GCSH-203ENST00000564386 CECR2Q9BXF3 1484 aa40.84■■■■■ 4.13
GCSH-203ENST00000564386 SMARCA4P51532 1647 aa40.66■■■■■ 4.1
GCSH-203ENST00000564386 BAZ1AQ9NRL2 1556 aaPredicted RBP40.61■■■■■ 4.09
GCSH-203ENST00000564386 SMARCA2P51531 1590 aa40.39■■■■■ 4.06
GCSH-203ENST00000564386 ATAD2BQ9ULI0 1458 aa40.36■■■■■ 4.05
GCSH-203ENST00000564386 NCAPD3P42695 1498 aa40.32■■■■■ 4.05
GCSH-203ENST00000564386 MROH2BQ7Z745 1585 aa40.32■■■■■ 4.05
GCSH-203ENST00000564386 PEG3Q9GZU2 1588 aa40.25■■■■■ 4.03
GCSH-203ENST00000564386 HMGXB3Q12766 1538 aa40.21■■■■■ 4.03
GCSH-203ENST00000564386 BAZ1BQ9UIG0 1483 aaKnown RBP40.07■■■■■ 4
GCSH-203ENST00000564386 WIZO95785 1651 aa39.96■■■■□ 3.99
GCSH-203ENST00000564386 RSF1Q96T23 1441 aaPredicted RBP39.85■■■■□ 3.97
GCSH-203ENST00000564386 TOP2AP11388 1531 aaKnown RBP39.53■■■■□ 3.92
GCSH-203ENST00000564386 LAMC3Q9Y6N6 1575 aa39.33■■■■□ 3.89
GCSH-203ENST00000564386 NESP48681 1621 aa39.33■■■■□ 3.89
GCSH-203ENST00000564386 ERCC6Q03468 1493 aa39.21■■■■□ 3.87
GCSH-203ENST00000564386 CADPSQ9ULU8 1353 aa39.14■■■■□ 3.86
GCSH-203ENST00000564386 PDS5BQ9NTI5 1447 aa39.01■■■■□ 3.84
GCSH-203ENST00000564386 CCDC88BA6NC98 1476 aa39■■■■□ 3.83
GCSH-203ENST00000564386 KIF21AQ7Z4S6 1674 aa39■■■■□ 3.83
GCSH-203ENST00000564386 CFTRP13569 1480 aa38.93■■■■□ 3.82
GCSH-203ENST00000564386 PRDM2Q13029 1718 aa38.86■■■■□ 3.81
GCSH-203ENST00000564386 SUPT5HO00267 1087 aaKnown RBP38.85■■■■□ 3.81
GCSH-203ENST00000564386 THOC2Q8NI27 1593 aaKnown RBP38.82■■■■□ 3.8
GCSH-203ENST00000564386 CUX2O14529 1486 aa38.79■■■■□ 3.8
GCSH-203ENST00000564386 FANCD2Q9BXW9 1451 aa38.73■■■■□ 3.79
GCSH-203ENST00000564386 CEP164Q9UPV0 1460 aa38.71■■■■□ 3.79
GCSH-203ENST00000564386 MRC2Q9UBG0 1479 aa38.63■■■■□ 3.77
GCSH-203ENST00000564386 WDR62O43379 1518 aa38.51■■■■□ 3.76
GCSH-203ENST00000564386 URB2Q14146 1524 aaKnown RBP38.33■■■■□ 3.73
GCSH-203ENST00000564386 ABCC8Q09428 1581 aa38.15■■■■□ 3.7
GCSH-203ENST00000564386 DNMBPQ6XZF7 1577 aa38.13■■■■□ 3.69
GCSH-203ENST00000564386 TOPBP1Q92547 1522 aa38.12■■■■□ 3.69
GCSH-203ENST00000564386 IFT140Q96RY7 1462 aa37.87■■■■□ 3.65
GCSH-203ENST00000564386 CUX1P39880 1505 aa37.85■■■■□ 3.65
GCSH-203ENST00000564386 POLA1P09884 1462 aaPredicted RBP37.79■■■■□ 3.64
GCSH-203ENST00000564386 TARBP1Q13395 1621 aaKnown RBP37.73■■■■□ 3.63
GCSH-203ENST00000564386 FGD5Q6ZNL6 1462 aa37.71■■■■□ 3.63
GCSH-203ENST00000564386 ZNF608Q9ULD9 1512 aaPredicted RBP37.65■■■■□ 3.62
GCSH-203ENST00000564386 SOGA1O94964 1423 aa37.61■■■■□ 3.61
GCSH-203ENST00000564386 BIVM-ERCC5R4GMW8 1640 aa37.61■■■■□ 3.61
GCSH-203ENST00000564386 WRNQ14191 1432 aaPredicted RBP eCLIP37.61■■■■□ 3.61
GCSH-203ENST00000564386 EIF4G3O43432 1585 aaKnown RBP37.6■■■■□ 3.61
GCSH-203ENST00000564386 RAD54L2Q9Y4B4 1467 aa37.59■■■■□ 3.61
GCSH-203ENST00000564386 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
GCSH-203ENST00000564386 SYNJ1O43426 1573 aa37.55■■■■□ 3.6
GCSH-203ENST00000564386 WDR97A6NE52 1622 aa37.5■■■■□ 3.59
GCSH-203ENST00000564386 AQRO60306 1485 aaKnown RBP eCLIP37.44■■■■□ 3.589e-9■■■■■ 35.9
GCSH-203ENST00000564386 DNAJC5Q9H3Z4 198 aa37.43■■■■□ 3.58
GCSH-203ENST00000564386 TDRD9Q8NDG6 1382 aaKnown RBP37.36■■■■□ 3.57
GCSH-203ENST00000564386 ABCA10Q8WWZ4 1543 aa37.36■■■■□ 3.57
GCSH-203ENST00000564386 ABCA5Q8WWZ7 1642 aa37.25■■■■□ 3.55
GCSH-203ENST00000564386 PBRM1Q86U86 1689 aa37.25■■■■□ 3.55
GCSH-203ENST00000564386 GAPVD1Q14C86 1478 aa37.21■■■■□ 3.55
GCSH-203ENST00000564386 GRIN2BQ13224 1484 aa37.2■■■■□ 3.55
GCSH-203ENST00000564386 CHD1O14646 1710 aa37.17■■■■□ 3.54
GCSH-203ENST00000564386 SNAPC4Q5SXM2 1469 aa37.14■■■■□ 3.54
GCSH-203ENST00000564386 MAGI1Q96QZ7 1491 aaPredicted RBP37.12■■■■□ 3.53
GCSH-203ENST00000564386 OSCARQ8IYS5 282 aa37.11■■■■□ 3.53
GCSH-203ENST00000564386 FBLN2P98095 1184 aa36.97■■■■□ 3.51
GCSH-203ENST00000564386 SYNJ2O15056 1496 aa36.95■■■■□ 3.51
GCSH-203ENST00000564386 ERICH3Q5RHP9 1530 aa36.94■■■■□ 3.5
GCSH-203ENST00000564386 ADAMTS12P58397 1594 aa36.89■■■■□ 3.5
GCSH-203ENST00000564386 CHMP7Q8WUX9 453 aaPredicted RBP36.89■■■■□ 3.5
GCSH-203ENST00000564386 KIF27Q86VH2 1401 aa36.84■■■■□ 3.49
GCSH-203ENST00000564386 FHAD1B1AJZ9 1412 aa36.77■■■■□ 3.48
GCSH-203ENST00000564386 GRIN2AQ12879 1464 aa36.73■■■■□ 3.47
GCSH-203ENST00000564386 TRIM41Q8WV44 630 aa36.71■■■■□ 3.47
GCSH-203ENST00000564386 CLASP1Q7Z460 1538 aa36.69■■■■□ 3.46
GCSH-203ENST00000564386 CUL7Q14999 1698 aa36.67■■■■□ 3.46
GCSH-203ENST00000564386 RIMBP3CA6NJZ7 1639 aa36.61■■■■□ 3.45
GCSH-203ENST00000564386 RIMBP3BA6NNM3 1639 aa36.61■■■■□ 3.45
GCSH-203ENST00000564386 RIMBP3Q9UFD9 1639 aa36.61■■■■□ 3.45
GCSH-203ENST00000564386 IGF1RP08069 1367 aa36.61■■■■□ 3.45
GCSH-203ENST00000564386 ARHGEF11O15085 1522 aa36.58■■■■□ 3.45
GCSH-203ENST00000564386 CEP170Q5SW79 1584 aa36.55■■■■□ 3.44
GCSH-203ENST00000564386 NUP160Q12769 1436 aa36.54■■■■□ 3.44
GCSH-203ENST00000564386 RUSC2Q8N2Y8 1516 aa36.45■■■■□ 3.43
GCSH-203ENST00000564386 CARMIL1Q5VZK9 1371 aa36.43■■■■□ 3.42
GCSH-203ENST00000564386 SHROOM2Q13796 1616 aa36.33■■■■□ 3.41
GCSH-203ENST00000564386 ARAP1Q96P48 1450 aa36.27■■■■□ 3.4
GCSH-203ENST00000564386 CHIC1Q5VXU3 224 aa36.27■■■■□ 3.4
GCSH-203ENST00000564386 RAPGEF2Q9Y4G8 1499 aa36.25■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms