RNA–Protein interactions for RNA: ENST00000553370.5

ACTN1-208, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 605 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-208ENST00000553370 NISCHQ9Y2I1 1504 aa24.69■■□□□ 1.54
ACTN1-208ENST00000553370 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
ACTN1-208ENST00000553370 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
ACTN1-208ENST00000553370 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
ACTN1-208ENST00000553370 ABCC9O60706 1549 aa22.26■■□□□ 1.15
ACTN1-208ENST00000553370 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
ACTN1-208ENST00000553370 NACADO15069 1562 aa21.02■□□□□ 0.95
ACTN1-208ENST00000553370 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
ACTN1-208ENST00000553370 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
ACTN1-208ENST00000553370 DNAJC5BQ9UF47 199 aa20.7■□□□□ 0.9
ACTN1-208ENST00000553370 PABPN1Q86U42 306 aaKnown RBP eCLIP20.66■□□□□ 0.9
ACTN1-208ENST00000553370 MYO15BQ96JP2 1530 aa20.63■□□□□ 0.89
ACTN1-208ENST00000553370 BICRAQ9NZM4 1560 aa20.49■□□□□ 0.87
ACTN1-208ENST00000553370 ZCCHC6Q5VYS8 1495 aaKnown RBP20.46■□□□□ 0.87
ACTN1-208ENST00000553370 PHF23Q9BUL5 403 aaPredicted RBP20.39■□□□□ 0.85
ACTN1-208ENST00000553370 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
ACTN1-208ENST00000553370 SCRIBQ14160 1630 aa20.34■□□□□ 0.85
ACTN1-208ENST00000553370 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
ACTN1-208ENST00000553370 CC2D2AQ9P2K1 1620 aa20.13■□□□□ 0.81
ACTN1-208ENST00000553370 EIF4G1Q04637 1599 aaKnown RBP20.05■□□□□ 0.8
ACTN1-208ENST00000553370 CECR2Q9BXF3 1484 aa20.05■□□□□ 0.8
ACTN1-208ENST00000553370 SENP3Q9H4L4 574 aaPredicted RBP19.84■□□□□ 0.77
ACTN1-208ENST00000553370 SMARCA4P51532 1647 aa19.35■□□□□ 0.69
ACTN1-208ENST00000553370 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
ACTN1-208ENST00000553370 ERCC6Q03468 1493 aa19.31■□□□□ 0.68
ACTN1-208ENST00000553370 NCAPD3P42695 1498 aa19.29■□□□□ 0.68
ACTN1-208ENST00000553370 ATAD2BQ9ULI0 1458 aa19.27■□□□□ 0.67
ACTN1-208ENST00000553370 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
ACTN1-208ENST00000553370 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
ACTN1-208ENST00000553370 CUX2O14529 1486 aa19.19■□□□□ 0.66
ACTN1-208ENST00000553370 BAZ1BQ9UIG0 1483 aaKnown RBP19.18■□□□□ 0.66
ACTN1-208ENST00000553370 PLPPR3Q6T4P5 718 aa19.14■□□□□ 0.65
ACTN1-208ENST00000553370 DNAJC5Q9H3Z4 198 aa19.09■□□□□ 0.65
ACTN1-208ENST00000553370 NESP48681 1621 aa19.07■□□□□ 0.64
ACTN1-208ENST00000553370 PEG3Q9GZU2 1588 aa19.07■□□□□ 0.64
ACTN1-208ENST00000553370 MROH2BQ7Z745 1585 aa19.02■□□□□ 0.64
ACTN1-208ENST00000553370 LAMC3Q9Y6N6 1575 aa19■□□□□ 0.63
ACTN1-208ENST00000553370 KIF21AQ7Z4S6 1674 aa18.98■□□□□ 0.63
ACTN1-208ENST00000553370 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
ACTN1-208ENST00000553370 WIZO95785 1651 aa18.88■□□□□ 0.61
ACTN1-208ENST00000553370 PDS5BQ9NTI5 1447 aa18.86■□□□□ 0.61
ACTN1-208ENST00000553370 CADPSQ9ULU8 1353 aa18.74■□□□□ 0.59
ACTN1-208ENST00000553370 MRC2Q9UBG0 1479 aa18.71■□□□□ 0.59
ACTN1-208ENST00000553370 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
ACTN1-208ENST00000553370 WDR62O43379 1518 aa18.65■□□□□ 0.58
ACTN1-208ENST00000553370 TOP2AP11388 1531 aaKnown RBP18.62■□□□□ 0.57
ACTN1-208ENST00000553370 PRDM2Q13029 1718 aa18.6■□□□□ 0.57
ACTN1-208ENST00000553370 FANCD2Q9BXW9 1451 aa18.59■□□□□ 0.57
ACTN1-208ENST00000553370 RSF1Q96T23 1441 aaPredicted RBP18.57■□□□□ 0.56
ACTN1-208ENST00000553370 CFTRP13569 1480 aa18.52■□□□□ 0.55
ACTN1-208ENST00000553370 URB2Q14146 1524 aaKnown RBP18.41■□□□□ 0.54
ACTN1-208ENST00000553370 TRIM41Q8WV44 630 aa18.41■□□□□ 0.54
ACTN1-208ENST00000553370 FOXD1Q16676 465 aa18.39■□□□□ 0.53
ACTN1-208ENST00000553370 CCDC88BA6NC98 1476 aa18.33■□□□□ 0.53
ACTN1-208ENST00000553370 OSCARQ8IYS5 282 aa18.27■□□□□ 0.52
ACTN1-208ENST00000553370 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
ACTN1-208ENST00000553370 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
ACTN1-208ENST00000553370 ABCC8Q09428 1581 aa18.21■□□□□ 0.51
ACTN1-208ENST00000553370 DNMBPQ6XZF7 1577 aa18.21■□□□□ 0.51
ACTN1-208ENST00000553370 EIF4G3O43432 1585 aaKnown RBP18.19■□□□□ 0.5
ACTN1-208ENST00000553370 ZNF608Q9ULD9 1512 aaPredicted RBP18.18■□□□□ 0.5
ACTN1-208ENST00000553370 CHD1O14646 1710 aa18.14■□□□□ 0.49
ACTN1-208ENST00000553370 RIMBP3CA6NJZ7 1639 aa18.13■□□□□ 0.49
ACTN1-208ENST00000553370 RIMBP3BA6NNM3 1639 aa18.13■□□□□ 0.49
ACTN1-208ENST00000553370 RIMBP3Q9UFD9 1639 aa18.13■□□□□ 0.49
ACTN1-208ENST00000553370 TARBP1Q13395 1621 aaKnown RBP18.08■□□□□ 0.48
ACTN1-208ENST00000553370 POLA1P09884 1462 aaPredicted RBP18.03■□□□□ 0.48
ACTN1-208ENST00000553370 ARHGEF11O15085 1522 aa18.03■□□□□ 0.48
ACTN1-208ENST00000553370 AQRO60306 1485 aaKnown RBP eCLIP18.01■□□□□ 0.471e-13■■■■■ 47.9
ACTN1-208ENST00000553370 FBLN2P98095 1184 aa18.01■□□□□ 0.47
ACTN1-208ENST00000553370 RAD54L2Q9Y4B4 1467 aa17.95■□□□□ 0.46
ACTN1-208ENST00000553370 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
ACTN1-208ENST00000553370 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
ACTN1-208ENST00000553370 SOGA1O94964 1423 aa17.94■□□□□ 0.46
ACTN1-208ENST00000553370 CUX1P39880 1505 aa17.9■□□□□ 0.46
ACTN1-208ENST00000553370 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
ACTN1-208ENST00000553370 PBRM1Q86U86 1689 aa17.9■□□□□ 0.46
ACTN1-208ENST00000553370 SNAPC4Q5SXM2 1469 aa17.89■□□□□ 0.45
ACTN1-208ENST00000553370 ADRA2BP18089 450 aa17.87■□□□□ 0.45
ACTN1-208ENST00000553370 CYB5RLQ6IPT4 315 aa17.86■□□□□ 0.45
ACTN1-208ENST00000553370 SYNJ1O43426 1573 aa17.86■□□□□ 0.45
ACTN1-208ENST00000553370 SUPT5HO00267 1087 aaKnown RBP17.85■□□□□ 0.45
ACTN1-208ENST00000553370 MAGI1Q96QZ7 1491 aaPredicted RBP17.83■□□□□ 0.45
ACTN1-208ENST00000553370 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
ACTN1-208ENST00000553370 CHMP7Q8WUX9 453 aaPredicted RBP17.82■□□□□ 0.44
ACTN1-208ENST00000553370 ARAP1Q96P48 1450 aa17.82■□□□□ 0.44
ACTN1-208ENST00000553370 CLASP1Q7Z460 1538 aa17.77■□□□□ 0.43
ACTN1-208ENST00000553370 SYNJ2O15056 1496 aa17.76■□□□□ 0.43
ACTN1-208ENST00000553370 TRHP20396 242 aaPredicted RBP17.76■□□□□ 0.43
ACTN1-208ENST00000553370 GAPVD1Q14C86 1478 aa17.75■□□□□ 0.43
ACTN1-208ENST00000553370 ABCA5Q8WWZ7 1642 aa17.74■□□□□ 0.43
ACTN1-208ENST00000553370 PPP6R1Q9UPN7 881 aa17.72■□□□□ 0.43
ACTN1-208ENST00000553370 ABCA10Q8WWZ4 1543 aa17.7■□□□□ 0.42
ACTN1-208ENST00000553370 BIVM-ERCC5R4GMW8 1640 aa17.68■□□□□ 0.42
ACTN1-208ENST00000553370 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
ACTN1-208ENST00000553370 WRNQ14191 1432 aaPredicted RBP eCLIP17.65■□□□□ 0.42
ACTN1-208ENST00000553370 ADAMTS12P58397 1594 aa17.63■□□□□ 0.41
ACTN1-208ENST00000553370 GRIN2AQ12879 1464 aa17.59■□□□□ 0.41
ACTN1-208ENST00000553370 CEP170Q5SW79 1584 aa17.53■□□□□ 0.4
ACTN1-208ENST00000553370 ERICH3Q5RHP9 1530 aa17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms