RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 DCAF8L2P0C7V8 631 aa27.15■■□□□ 1.94
NUCKS1-201ENST00000367142 SUPT5HO00267 1087 aaKnown RBP25.37■■□□□ 1.65
NUCKS1-201ENST00000367142 PELP1Q8IZL8 1130 aaKnown RBP25.08■■□□□ 1.61
NUCKS1-201ENST00000367142 EHMT2Q96KQ7 1210 aa24.88■■□□□ 1.57
NUCKS1-201ENST00000367142 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
NUCKS1-201ENST00000367142 APLP2Q06481 763 aa24.84■■□□□ 1.57
NUCKS1-201ENST00000367142 SHROOM4Q9ULL8 1493 aa24.74■■□□□ 1.55
NUCKS1-201ENST00000367142 NISCHQ9Y2I1 1504 aa24.42■■□□□ 1.5
NUCKS1-201ENST00000367142 TTBK1Q5TCY1 1321 aaPredicted RBP24.06■■□□□ 1.44
NUCKS1-201ENST00000367142 ERICH6Q7L0X2 663 aa24.03■■□□□ 1.44
NUCKS1-201ENST00000367142 CCER1Q8TC90 406 aaPredicted RBP23.98■■□□□ 1.43
NUCKS1-201ENST00000367142 ATP1B4Q9UN42 357 aaPredicted RBP23.93■■□□□ 1.42
NUCKS1-201ENST00000367142 RANGAP1P46060 587 aaPredicted RBP23.91■■□□□ 1.42
NUCKS1-201ENST00000367142 PCGF6Q9BYE7 350 aa23.76■■□□□ 1.39
NUCKS1-201ENST00000367142 CENPBP07199 599 aaPredicted RBP23.7■■□□□ 1.39
NUCKS1-201ENST00000367142 TRIM41Q8WV44 630 aa23.55■■□□□ 1.36
NUCKS1-201ENST00000367142 ZEB1P37275 1124 aaPredicted RBP23.55■■□□□ 1.36
NUCKS1-201ENST00000367142 UBTFP17480 764 aaKnown RBP23.5■■□□□ 1.35
NUCKS1-201ENST00000367142 NEFLP07196 543 aa23.5■■□□□ 1.35
NUCKS1-201ENST00000367142 MYT1LQ9UL68 1186 aa23.35■■□□□ 1.33
NUCKS1-201ENST00000367142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
NUCKS1-201ENST00000367142 HNRNPUL2Q1KMD3 747 aaKnown RBP23.12■■□□□ 1.29
NUCKS1-201ENST00000367142 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
NUCKS1-201ENST00000367142 DAXXQ9UER7 740 aaPredicted RBP23.07■■□□□ 1.28
NUCKS1-201ENST00000367142 POLR3GLQ9BT43 218 aa22.99■■□□□ 1.27
NUCKS1-201ENST00000367142 CHIC1Q5VXU3 224 aa22.82■■□□□ 1.24
NUCKS1-201ENST00000367142 ITGAEP38570 1179 aa22.82■■□□□ 1.24
NUCKS1-201ENST00000367142 SLC4A1APQ9BWU0 796 aaKnown RBP22.79■■□□□ 1.24
NUCKS1-201ENST00000367142 PPARGC1BQ86YN6 1023 aaKnown RBP22.77■■□□□ 1.24
NUCKS1-201ENST00000367142 MYT1Q01538 1121 aa22.74■■□□□ 1.23
NUCKS1-201ENST00000367142 CNGB1Q14028 1251 aaPredicted RBP22.62■■□□□ 1.21
NUCKS1-201ENST00000367142 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
NUCKS1-201ENST00000367142 CLSPNQ9HAW4 1339 aa22.49■■□□□ 1.19
NUCKS1-201ENST00000367142 ZNF316A6NFI3 1004 aaPredicted RBP22.47■■□□□ 1.19
NUCKS1-201ENST00000367142 RTL5Q5HYW3 569 aaPredicted RBP22.29■■□□□ 1.16
NUCKS1-201ENST00000367142 TRIM52Q96A61 297 aa22.26■■□□□ 1.15
NUCKS1-201ENST00000367142 ZBTB47Q9UFB7 747 aaPredicted RBP22.25■■□□□ 1.15
NUCKS1-201ENST00000367142 FAM50AQ14320 339 aaKnown RBP22.24■■□□□ 1.15
NUCKS1-201ENST00000367142 HRCP23327 699 aa22.21■■□□□ 1.15
NUCKS1-201ENST00000367142 SLC24A1O60721 1099 aa22.1■■□□□ 1.13
NUCKS1-201ENST00000367142 BCANQ96GW7 911 aa22.07■■□□□ 1.12
NUCKS1-201ENST00000367142 NEFMP07197 916 aa22.02■■□□□ 1.12
NUCKS1-201ENST00000367142 ZNF326Q5BKZ1 582 aaKnown RBP22.01■■□□□ 1.11
NUCKS1-201ENST00000367142 LOC105371045A0A1W2PR82 267 aa22.01■■□□□ 1.11
NUCKS1-201ENST00000367142 FBLN2P98095 1184 aa22■■□□□ 1.11
NUCKS1-201ENST00000367142 NEUROD1Q13562 356 aa21.98■■□□□ 1.11
NUCKS1-201ENST00000367142 CANXP27824 592 aaKnown RBP21.95■■□□□ 1.1
NUCKS1-201ENST00000367142 DIEXFQ68CQ4 756 aaKnown RBP21.87■■□□□ 1.09
NUCKS1-201ENST00000367142 ANP32CO43423 234 aa21.86■■□□□ 1.09
NUCKS1-201ENST00000367142 PABPN1Q86U42 306 aaKnown RBP eCLIP21.85■■□□□ 1.09
NUCKS1-201ENST00000367142 BCL11AQ9H165 835 aa21.83■■□□□ 1.09
NUCKS1-201ENST00000367142 ESF1Q9H501 851 aaKnown RBP21.8■■□□□ 1.08
NUCKS1-201ENST00000367142 CDK11AQ9UQ88 783 aaPredicted RBP21.73■■□□□ 1.07
NUCKS1-201ENST00000367142 ABCC9O60706 1549 aa21.67■■□□□ 1.06
NUCKS1-201ENST00000367142 STAG3Q9UJ98 1225 aa21.61■■□□□ 1.05
NUCKS1-201ENST00000367142 ZNF777Q9ULD5 760 aaPredicted RBP21.6■■□□□ 1.05
NUCKS1-201ENST00000367142 ARID3CA6NKF2 412 aa21.59■■□□□ 1.05
NUCKS1-201ENST00000367142 PLPPR3Q6T4P5 718 aa21.5■■□□□ 1.03
NUCKS1-201ENST00000367142 P3H3Q8IVL6 736 aa21.49■■□□□ 1.03
NUCKS1-201ENST00000367142 NPM1P06748 294 aaKnown RBP eCLIP21.48■■□□□ 1.034e-9■□□□□ 11
NUCKS1-201ENST00000367142 CHGAP10645 457 aaKnown RBP21.48■■□□□ 1.03
NUCKS1-201ENST00000367142 ANP32AP39687 249 aaKnown RBP21.44■■□□□ 1.02
NUCKS1-201ENST00000367142 ANP32BQ92688 251 aaKnown RBP21.42■■□□□ 1.02
NUCKS1-201ENST00000367142 HSP90AA1P07900 732 aaKnown RBP21.38■■□□□ 1.01
NUCKS1-201ENST00000367142 NPM2Q86SE8 214 aaKnown RBP21.31■■□□□ 1
NUCKS1-201ENST00000367142 UPF2Q9HAU5 1272 aaKnown RBP21.31■■□□□ 1
NUCKS1-201ENST00000367142 GTF3C3Q9Y5Q9 886 aa21.29■■□□□ 1
NUCKS1-201ENST00000367142 SCAF1Q9H7N4 1312 aaKnown RBP21.25■□□□□ 0.99
NUCKS1-201ENST00000367142 TONSLQ96HA7 1378 aa21.2■□□□□ 0.98
NUCKS1-201ENST00000367142 CSRNP3Q8WYN3 585 aa21.19■□□□□ 0.98
NUCKS1-201ENST00000367142 A0A0G2JS52 829 aa21.18■□□□□ 0.98
NUCKS1-201ENST00000367142 CDK11BP21127 795 aaKnown RBP21.16■□□□□ 0.98
NUCKS1-201ENST00000367142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.12■□□□□ 0.973e-10■■■■□ 20.8
NUCKS1-201ENST00000367142 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.11■□□□□ 0.97
NUCKS1-201ENST00000367142 WDR43Q15061 677 aaKnown RBP eCLIP21.08■□□□□ 0.969e-10■□□□□ 9.8
NUCKS1-201ENST00000367142 MYH16Q9H6N6 1097 aa21.04■□□□□ 0.96
NUCKS1-201ENST00000367142 ZBTB7CA1YPR0 619 aa21.03■□□□□ 0.96
NUCKS1-201ENST00000367142 FAM9BQ8IZU0 186 aa21.02■□□□□ 0.96
NUCKS1-201ENST00000367142 TSPY4P0CV99 314 aa21■□□□□ 0.95
NUCKS1-201ENST00000367142 TSPY10P0CW01 314 aa21■□□□□ 0.95
NUCKS1-201ENST00000367142 HNRNPUQ00839 825 aaKnown RBP eCLIP21■□□□□ 0.95
NUCKS1-201ENST00000367142 SALL2Q9Y467 1007 aaPredicted RBP20.99■□□□□ 0.95
NUCKS1-201ENST00000367142 TMC1Q8TDI8 760 aa20.98■□□□□ 0.95
NUCKS1-201ENST00000367142 C14orf37Q86TY3 774 aa20.98■□□□□ 0.95
NUCKS1-201ENST00000367142 PPP1R15AO75807 674 aaPredicted RBP20.97■□□□□ 0.95
NUCKS1-201ENST00000367142 FKBP8Q14318 412 aa20.94■□□□□ 0.94
NUCKS1-201ENST00000367142 CHIC2Q9UKJ5 165 aa20.94■□□□□ 0.94
NUCKS1-201ENST00000367142 HAP1P54257 671 aaPredicted RBP20.92■□□□□ 0.94
NUCKS1-201ENST00000367142 EIF5BO60841 1220 aaKnown RBP20.9■□□□□ 0.94
NUCKS1-201ENST00000367142 KDM2AQ9Y2K7 1162 aa20.89■□□□□ 0.93
NUCKS1-201ENST00000367142 PLEKHG5O94827 1062 aa20.89■□□□□ 0.93
NUCKS1-201ENST00000367142 CHMP7Q8WUX9 453 aaPredicted RBP20.88■□□□□ 0.93
NUCKS1-201ENST00000367142 CCDC136Q96JN2 1154 aa20.87■□□□□ 0.93
NUCKS1-201ENST00000367142 ACIN1Q9UKV3 1341 aaKnown RBP20.86■□□□□ 0.93
NUCKS1-201ENST00000367142 DDX10Q13206 875 aaKnown RBP20.84■□□□□ 0.93
NUCKS1-201ENST00000367142 GLIPR1L2Q4G1C9 344 aa20.79■□□□□ 0.92
NUCKS1-201ENST00000367142 NCLP19338 710 aaKnown RBP20.79■□□□□ 0.92
NUCKS1-201ENST00000367142 MTUS2Q5JR59 1369 aa20.78■□□□□ 0.92
NUCKS1-201ENST00000367142 ARID4BQ4LE39 1312 aaPredicted RBP20.77■□□□□ 0.92
NUCKS1-201ENST00000367142 MRS2Q9HD23 443 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms