RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NISCHQ9Y2I1 1504 aa52.52■■■■■ 6
SDC3-202ENST00000339394 CCDC180Q9P1Z9 1646 aa46.25■■■■■ 4.99
SDC3-202ENST00000339394 ABCC9O60706 1549 aa44.78■■■■■ 4.76
SDC3-202ENST00000339394 ZCCHC6Q5VYS8 1495 aaKnown RBP43.88■■■■■ 4.62
SDC3-202ENST00000339394 DCAF8L2P0C7V8 631 aa43.76■■■■■ 4.6
SDC3-202ENST00000339394 DCAF1Q9Y4B6 1507 aa43.44■■■■■ 4.55
SDC3-202ENST00000339394 NACADO15069 1562 aa43.41■■■■■ 4.54
SDC3-202ENST00000339394 MYO15BQ96JP2 1530 aa43.38■■■■■ 4.53
SDC3-202ENST00000339394 RB1CC1Q8TDY2 1594 aa43.28■■■■■ 4.52
SDC3-202ENST00000339394 SCRIBQ14160 1630 aa42.36■■■■■ 4.37
SDC3-202ENST00000339394 UNC13AQ9UPW8 1703 aa42.21■■■■■ 4.35
SDC3-202ENST00000339394 PABPN1Q86U42 306 aaKnown RBP eCLIP42.05■■■■■ 4.32
SDC3-202ENST00000339394 SHROOM4Q9ULL8 1493 aa42.01■■■■■ 4.32
SDC3-202ENST00000339394 BICRAQ9NZM4 1560 aa41.97■■■■■ 4.31
SDC3-202ENST00000339394 CECR2Q9BXF3 1484 aa40.89■■■■■ 4.14
SDC3-202ENST00000339394 EIF4G1Q04637 1599 aaKnown RBP40.83■■■■■ 4.13
SDC3-202ENST00000339394 BAZ1AQ9NRL2 1556 aaPredicted RBP40.63■■■■■ 4.09
SDC3-202ENST00000339394 DNAJC5BQ9UF47 199 aa40.59■■■■■ 4.09
SDC3-202ENST00000339394 SMARCA4P51532 1647 aa40.56■■■■■ 4.08
SDC3-202ENST00000339394 MROH2BQ7Z745 1585 aa40.51■■■■■ 4.07
SDC3-202ENST00000339394 CC2D2AQ9P2K1 1620 aa40.47■■■■■ 4.07
SDC3-202ENST00000339394 RSF1Q96T23 1441 aaPredicted RBP40.33■■■■■ 4.05
SDC3-202ENST00000339394 ATAD2BQ9ULI0 1458 aa40.24■■■■■ 4.03
SDC3-202ENST00000339394 SMARCA2P51531 1590 aa40.17■■■■■ 4.02
SDC3-202ENST00000339394 PEG3Q9GZU2 1588 aa40.15■■■■■ 4.02
SDC3-202ENST00000339394 NCAPD3P42695 1498 aa40.12■■■■■ 4.01
SDC3-202ENST00000339394 WIZO95785 1651 aa40.05■■■■■ 4
SDC3-202ENST00000339394 BAZ1BQ9UIG0 1483 aaKnown RBP39.93■■■■□ 3.98
SDC3-202ENST00000339394 HMGXB3Q12766 1538 aa39.91■■■■□ 3.98
SDC3-202ENST00000339394 SUPT5HO00267 1087 aaKnown RBP39.89■■■■□ 3.98
SDC3-202ENST00000339394 TOP2AP11388 1531 aaKnown RBP39.66■■■■□ 3.94
SDC3-202ENST00000339394 CCDC88BA6NC98 1476 aa39.27■■■■□ 3.88
SDC3-202ENST00000339394 CADPSQ9ULU8 1353 aa39.02■■■■□ 3.84
SDC3-202ENST00000339394 NESP48681 1621 aa38.96■■■■□ 3.83
SDC3-202ENST00000339394 CFTRP13569 1480 aa38.9■■■■□ 3.82
SDC3-202ENST00000339394 LAMC3Q9Y6N6 1575 aa38.87■■■■□ 3.81
SDC3-202ENST00000339394 PDS5BQ9NTI5 1447 aa38.67■■■■□ 3.78
SDC3-202ENST00000339394 ERCC6Q03468 1493 aa38.54■■■■□ 3.76
SDC3-202ENST00000339394 FANCD2Q9BXW9 1451 aa38.54■■■■□ 3.76
SDC3-202ENST00000339394 PRDM2Q13029 1718 aa38.43■■■■□ 3.74
SDC3-202ENST00000339394 CEP164Q9UPV0 1460 aa38.4■■■■□ 3.74
SDC3-202ENST00000339394 KIF21AQ7Z4S6 1674 aa38.39■■■■□ 3.74
SDC3-202ENST00000339394 MRC2Q9UBG0 1479 aa38.19■■■■□ 3.7
SDC3-202ENST00000339394 THOC2Q8NI27 1593 aaKnown RBP38.11■■■■□ 3.69
SDC3-202ENST00000339394 URB2Q14146 1524 aaKnown RBP38.1■■■■□ 3.69
SDC3-202ENST00000339394 WDR62O43379 1518 aa38.02■■■■□ 3.68
SDC3-202ENST00000339394 ABCC8Q09428 1581 aa38.02■■■■□ 3.68
SDC3-202ENST00000339394 WRNQ14191 1432 aaPredicted RBP eCLIP37.99■■■■□ 3.675e-6■■■■■ 54.3
SDC3-202ENST00000339394 TOPBP1Q92547 1522 aa37.98■■■■□ 3.67
SDC3-202ENST00000339394 DNMBPQ6XZF7 1577 aa37.95■■■■□ 3.67
SDC3-202ENST00000339394 CUX1P39880 1505 aa37.95■■■■□ 3.67
SDC3-202ENST00000339394 CUX2O14529 1486 aa37.83■■■■□ 3.65
SDC3-202ENST00000339394 SYNJ1O43426 1573 aa37.81■■■■□ 3.64
SDC3-202ENST00000339394 TOP2BQ02880 1626 aa37.76■■■■□ 3.64
SDC3-202ENST00000339394 POLA1P09884 1462 aaPredicted RBP37.72■■■■□ 3.63
SDC3-202ENST00000339394 FGD5Q6ZNL6 1462 aa37.72■■■■□ 3.63
SDC3-202ENST00000339394 BIVM-ERCC5R4GMW8 1640 aa37.7■■■■□ 3.63
SDC3-202ENST00000339394 TRIM41Q8WV44 630 aa37.63■■■■□ 3.62
SDC3-202ENST00000339394 CHIC1Q5VXU3 224 aa37.62■■■■□ 3.61
SDC3-202ENST00000339394 SOGA1O94964 1423 aa37.61■■■■□ 3.61
SDC3-202ENST00000339394 RAD54L2Q9Y4B4 1467 aa37.58■■■■□ 3.61
SDC3-202ENST00000339394 IFT140Q96RY7 1462 aa37.56■■■■□ 3.6
SDC3-202ENST00000339394 TARBP1Q13395 1621 aaKnown RBP37.47■■■■□ 3.59
SDC3-202ENST00000339394 ZNF608Q9ULD9 1512 aaPredicted RBP37.38■■■■□ 3.57
SDC3-202ENST00000339394 ABCA10Q8WWZ4 1543 aa37.37■■■■□ 3.57
SDC3-202ENST00000339394 TDRD9Q8NDG6 1382 aaKnown RBP37.34■■■■□ 3.57
SDC3-202ENST00000339394 AQRO60306 1485 aaKnown RBP eCLIP37.28■■■■□ 3.562e-6■■□□□ 14
SDC3-202ENST00000339394 WDR97A6NE52 1622 aa37.25■■■■□ 3.55
SDC3-202ENST00000339394 EIF4G3O43432 1585 aaKnown RBP37.17■■■■□ 3.54
SDC3-202ENST00000339394 GAPVD1Q14C86 1478 aa37.16■■■■□ 3.54
SDC3-202ENST00000339394 KIF27Q86VH2 1401 aa37.14■■■■□ 3.54
SDC3-202ENST00000339394 ABCA5Q8WWZ7 1642 aa37.11■■■■□ 3.53
SDC3-202ENST00000339394 GRIN2BQ13224 1484 aa37.05■■■■□ 3.52
SDC3-202ENST00000339394 RUSC2Q8N2Y8 1516 aa37.04■■■■□ 3.52
SDC3-202ENST00000339394 IGF1RP08069 1367 aa36.95■■■■□ 3.51
SDC3-202ENST00000339394 ERICH3Q5RHP9 1530 aa36.92■■■■□ 3.5
SDC3-202ENST00000339394 SNAPC4Q5SXM2 1469 aa36.91■■■■□ 3.5
SDC3-202ENST00000339394 PBRM1Q86U86 1689 aa36.89■■■■□ 3.5
SDC3-202ENST00000339394 FAM9AQ8IZU1 332 aaPredicted RBP36.87■■■■□ 3.49
SDC3-202ENST00000339394 MAGI1Q96QZ7 1491 aaPredicted RBP36.86■■■■□ 3.49
SDC3-202ENST00000339394 EEA1Q15075 1411 aa36.85■■■■□ 3.49
SDC3-202ENST00000339394 CSRNP3Q8WYN3 585 aa36.79■■■■□ 3.48
SDC3-202ENST00000339394 FBLN2P98095 1184 aa36.75■■■■□ 3.47
SDC3-202ENST00000339394 FHAD1B1AJZ9 1412 aa36.75■■■■□ 3.47
SDC3-202ENST00000339394 CARMIL1Q5VZK9 1371 aa36.74■■■■□ 3.47
SDC3-202ENST00000339394 CHMP7Q8WUX9 453 aaPredicted RBP36.74■■■■□ 3.47
SDC3-202ENST00000339394 SYNJ2O15056 1496 aa36.72■■■■□ 3.47
SDC3-202ENST00000339394 ADAMTS12P58397 1594 aa36.71■■■■□ 3.47
SDC3-202ENST00000339394 CUL7Q14999 1698 aa36.65■■■■□ 3.46
SDC3-202ENST00000339394 PRXQ9BXM0 1461 aa36.6■■■■□ 3.45
SDC3-202ENST00000339394 GRIN2AQ12879 1464 aa36.57■■■■□ 3.44
SDC3-202ENST00000339394 RAPGEF2Q9Y4G8 1499 aa36.55■■■■□ 3.44
SDC3-202ENST00000339394 CHD1O14646 1710 aa36.52■■■■□ 3.44
SDC3-202ENST00000339394 OSCARQ8IYS5 282 aa36.51■■■■□ 3.44
SDC3-202ENST00000339394 NUP160Q12769 1436 aa36.39■■■■□ 3.42
SDC3-202ENST00000339394 EHMT2Q96KQ7 1210 aa36.36■■■■□ 3.41
SDC3-202ENST00000339394 KIF21BO75037 1637 aa36.36■■■■□ 3.41
SDC3-202ENST00000339394 CEP170Q5SW79 1584 aa36.32■■■■□ 3.41
SDC3-202ENST00000339394 GOLGA3Q08378 1498 aa36.26■■■■□ 3.4
SDC3-202ENST00000339394 KIAA0586Q9BVV6 1533 aa36.21■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms