RNA–Protein interactions for RNA: ENST00000554158.1

ACTN1-212, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 571 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-212ENST00000554158 NISCHQ9Y2I1 1504 aa20.43■□□□□ 0.86
ACTN1-212ENST00000554158 ABCC9O60706 1549 aa18.6■□□□□ 0.57
ACTN1-212ENST00000554158 CCDC180Q9P1Z9 1646 aa18.51■□□□□ 0.55
ACTN1-212ENST00000554158 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
ACTN1-212ENST00000554158 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
ACTN1-212ENST00000554158 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
ACTN1-212ENST00000554158 NACADO15069 1562 aa17.5■□□□□ 0.39
ACTN1-212ENST00000554158 DNAJC5BQ9UF47 199 aa17.45■□□□□ 0.38
ACTN1-212ENST00000554158 DCAF8L2P0C7V8 631 aa17.43■□□□□ 0.38
ACTN1-212ENST00000554158 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
ACTN1-212ENST00000554158 PABPN1Q86U42 306 aaKnown RBP eCLIP17.26■□□□□ 0.35
ACTN1-212ENST00000554158 MYO15BQ96JP2 1530 aa17.13■□□□□ 0.33
ACTN1-212ENST00000554158 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
ACTN1-212ENST00000554158 SHROOM4Q9ULL8 1493 aa16.89■□□□□ 0.29
ACTN1-212ENST00000554158 ZCCHC6Q5VYS8 1495 aaKnown RBP16.88■□□□□ 0.29
ACTN1-212ENST00000554158 DCAF1Q9Y4B6 1507 aa16.86■□□□□ 0.29
ACTN1-212ENST00000554158 SCRIBQ14160 1630 aa16.84■□□□□ 0.29
ACTN1-212ENST00000554158 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
ACTN1-212ENST00000554158 CECR2Q9BXF3 1484 aa16.78■□□□□ 0.28
ACTN1-212ENST00000554158 EIF4G1Q04637 1599 aaKnown RBP16.72■□□□□ 0.27
ACTN1-212ENST00000554158 DNAJC5Q9H3Z4 198 aa16.24■□□□□ 0.19
ACTN1-212ENST00000554158 ERCC6Q03468 1493 aa16.16■□□□□ 0.18
ACTN1-212ENST00000554158 CUX2O14529 1486 aa16.12■□□□□ 0.17
ACTN1-212ENST00000554158 NCAPD3P42695 1498 aa16.08■□□□□ 0.16
ACTN1-212ENST00000554158 SMARCA2P51531 1590 aa16.05■□□□□ 0.16
ACTN1-212ENST00000554158 ATAD2BQ9ULI0 1458 aa16.02■□□□□ 0.15
ACTN1-212ENST00000554158 SMARCA4P51532 1647 aa16.01■□□□□ 0.15
ACTN1-212ENST00000554158 HMGXB3Q12766 1538 aa16■□□□□ 0.15
ACTN1-212ENST00000554158 BAZ1AQ9NRL2 1556 aaPredicted RBP15.93■□□□□ 0.14
ACTN1-212ENST00000554158 BAZ1BQ9UIG0 1483 aaKnown RBP15.93■□□□□ 0.14
ACTN1-212ENST00000554158 NESP48681 1621 aa15.89■□□□□ 0.13
ACTN1-212ENST00000554158 LAMC3Q9Y6N6 1575 aa15.83■□□□□ 0.13
ACTN1-212ENST00000554158 PEG3Q9GZU2 1588 aa15.81■□□□□ 0.12
ACTN1-212ENST00000554158 THOC2Q8NI27 1593 aaKnown RBP15.8■□□□□ 0.12
ACTN1-212ENST00000554158 KIF21AQ7Z4S6 1674 aa15.79■□□□□ 0.12
ACTN1-212ENST00000554158 PDS5BQ9NTI5 1447 aa15.75■□□□□ 0.11
ACTN1-212ENST00000554158 PHF23Q9BUL5 403 aaPredicted RBP15.73■□□□□ 0.11
ACTN1-212ENST00000554158 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
ACTN1-212ENST00000554158 CADPSQ9ULU8 1353 aa15.61■□□□□ 0.09
ACTN1-212ENST00000554158 MRC2Q9UBG0 1479 aa15.59■□□□□ 0.09
ACTN1-212ENST00000554158 WIZO95785 1651 aa15.59■□□□□ 0.09
ACTN1-212ENST00000554158 TRIM41Q8WV44 630 aa15.56■□□□□ 0.08
ACTN1-212ENST00000554158 WDR62O43379 1518 aa15.54■□□□□ 0.08
ACTN1-212ENST00000554158 CEP164Q9UPV0 1460 aa15.53■□□□□ 0.08
ACTN1-212ENST00000554158 FANCD2Q9BXW9 1451 aa15.46■□□□□ 0.07
ACTN1-212ENST00000554158 PRDM2Q13029 1718 aa15.41■□□□□ 0.06
ACTN1-212ENST00000554158 CFTRP13569 1480 aa15.38■□□□□ 0.05
ACTN1-212ENST00000554158 OSCARQ8IYS5 282 aa15.37■□□□□ 0.05
ACTN1-212ENST00000554158 TOP2AP11388 1531 aaKnown RBP15.37■□□□□ 0.05
ACTN1-212ENST00000554158 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
ACTN1-212ENST00000554158 URB2Q14146 1524 aaKnown RBP15.3■□□□□ 0.04
ACTN1-212ENST00000554158 IFT140Q96RY7 1462 aa15.2■□□□□ 0.02
ACTN1-212ENST00000554158 RIMBP3CA6NJZ7 1639 aa15.19■□□□□ 0.02
ACTN1-212ENST00000554158 RIMBP3BA6NNM3 1639 aa15.19■□□□□ 0.02
ACTN1-212ENST00000554158 RIMBP3Q9UFD9 1639 aa15.19■□□□□ 0.02
ACTN1-212ENST00000554158 ABCC8Q09428 1581 aa15.16■□□□□ 0.02
ACTN1-212ENST00000554158 CCDC88BA6NC98 1476 aa15.15■□□□□ 0.02
ACTN1-212ENST00000554158 TOPBP1Q92547 1522 aa15.14■□□□□ 0.01
ACTN1-212ENST00000554158 ZNF608Q9ULD9 1512 aaPredicted RBP15.13■□□□□ 0.01
ACTN1-212ENST00000554158 EIF4G3O43432 1585 aaKnown RBP15.12■□□□□ 0.01
ACTN1-212ENST00000554158 DNMBPQ6XZF7 1577 aa15.11■□□□□ 0.01
ACTN1-212ENST00000554158 CHD1O14646 1710 aa15.1■□□□□ 0.01
ACTN1-212ENST00000554158 ARHGEF11O15085 1522 aa15.09■□□□□ 0.01
ACTN1-212ENST00000554158 FBLN2P98095 1184 aa15.04■□□□□ -0
ACTN1-212ENST00000554158 CYB5RLQ6IPT4 315 aa15.02■□□□□ -0
ACTN1-212ENST00000554158 TARBP1Q13395 1621 aaKnown RBP15.01□□□□□ -0.01
ACTN1-212ENST00000554158 AQRO60306 1485 aaKnown RBP eCLIP14.99□□□□□ -0.011e-13■■■■■ 47.9
ACTN1-212ENST00000554158 TRHP20396 242 aaPredicted RBP14.98□□□□□ -0.01
ACTN1-212ENST00000554158 SENP3Q9H4L4 574 aaPredicted RBP14.96□□□□□ -0.01
ACTN1-212ENST00000554158 POLA1P09884 1462 aaPredicted RBP14.95□□□□□ -0.02
ACTN1-212ENST00000554158 WDR97A6NE52 1622 aa14.92□□□□□ -0.02
ACTN1-212ENST00000554158 SOGA1O94964 1423 aa14.92□□□□□ -0.02
ACTN1-212ENST00000554158 PLPPR3Q6T4P5 718 aa14.91□□□□□ -0.02
ACTN1-212ENST00000554158 ARAP1Q96P48 1450 aa14.9□□□□□ -0.02
ACTN1-212ENST00000554158 RAD54L2Q9Y4B4 1467 aa14.89□□□□□ -0.03
ACTN1-212ENST00000554158 SYNJ1O43426 1573 aa14.89□□□□□ -0.03
ACTN1-212ENST00000554158 TDRD9Q8NDG6 1382 aaKnown RBP14.88□□□□□ -0.03
ACTN1-212ENST00000554158 CHMP7Q8WUX9 453 aaPredicted RBP14.87□□□□□ -0.03
ACTN1-212ENST00000554158 SNAPC4Q5SXM2 1469 aa14.87□□□□□ -0.03
ACTN1-212ENST00000554158 FGD5Q6ZNL6 1462 aa14.86□□□□□ -0.03
ACTN1-212ENST00000554158 MAGI1Q96QZ7 1491 aaPredicted RBP14.84□□□□□ -0.03
ACTN1-212ENST00000554158 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
ACTN1-212ENST00000554158 GRIN2BQ13224 1484 aa14.82□□□□□ -0.04
ACTN1-212ENST00000554158 CLASP1Q7Z460 1538 aa14.81□□□□□ -0.04
ACTN1-212ENST00000554158 CUX1P39880 1505 aa14.79□□□□□ -0.04
ACTN1-212ENST00000554158 SYNJ2O15056 1496 aa14.78□□□□□ -0.04
ACTN1-212ENST00000554158 GAPVD1Q14C86 1478 aa14.74□□□□□ -0.05
ACTN1-212ENST00000554158 ABCA5Q8WWZ7 1642 aa14.69□□□□□ -0.06
ACTN1-212ENST00000554158 ABCA10Q8WWZ4 1543 aa14.67□□□□□ -0.06
ACTN1-212ENST00000554158 SUPT5HO00267 1087 aaKnown RBP14.62□□□□□ -0.07
ACTN1-212ENST00000554158 WRNQ14191 1432 aaPredicted RBP eCLIP14.62□□□□□ -0.07
ACTN1-212ENST00000554158 GRIN2AQ12879 1464 aa14.61□□□□□ -0.07
ACTN1-212ENST00000554158 ADAMTS12P58397 1594 aa14.6□□□□□ -0.07
ACTN1-212ENST00000554158 BIVM-ERCC5R4GMW8 1640 aa14.58□□□□□ -0.08
ACTN1-212ENST00000554158 CEP170Q5SW79 1584 aa14.56□□□□□ -0.08
ACTN1-212ENST00000554158 TOP2BQ02880 1626 aa14.55□□□□□ -0.08
ACTN1-212ENST00000554158 FHAD1B1AJZ9 1412 aa14.54□□□□□ -0.08
ACTN1-212ENST00000554158 ERCC6L2Q5T890 1561 aa14.54□□□□□ -0.08
ACTN1-212ENST00000554158 SHROOM2Q13796 1616 aa14.52□□□□□ -0.08
ACTN1-212ENST00000554158 ERICH3Q5RHP9 1530 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms