RNA–Protein interactions for RNA: ENST00000495640.1

COPS3-211, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 3

Gene COPS3, Length 333 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-211ENST00000495640 AEBP2Q6ZN18 517 aaPredicted RBP14.48□□□□□ -0.09
COPS3-211ENST00000495640 CHIC1Q5VXU3 224 aa13.52□□□□□ -0.25
COPS3-211ENST00000495640 SENP3Q9H4L4 574 aaPredicted RBP12.26□□□□□ -0.45
COPS3-211ENST00000495640 PHF23Q9BUL5 403 aaPredicted RBP12.1□□□□□ -0.47
COPS3-211ENST00000495640 FOXD1Q16676 465 aa11.51□□□□□ -0.57
COPS3-211ENST00000495640 POTEDQ86YR6 584 aa10.87□□□□□ -0.67
COPS3-211ENST00000495640 MSH5O43196 834 aa10.76□□□□□ -0.69
COPS3-211ENST00000495640 PLPPR3Q6T4P5 718 aa10.66□□□□□ -0.7
COPS3-211ENST00000495640 PPP6R1Q9UPN7 881 aa10.66□□□□□ -0.7
COPS3-211ENST00000495640 PIAS4Q8N2W9 510 aaPredicted RBP10.65□□□□□ -0.7
COPS3-211ENST00000495640 ADRA2BP18089 450 aa10.57□□□□□ -0.72
COPS3-211ENST00000495640 MAPK8IP2Q13387 824 aaPredicted RBP9.78□□□□□ -0.84
COPS3-211ENST00000495640 DMRT2Q9Y5R5 561 aa9.74□□□□□ -0.85
COPS3-211ENST00000495640 KCNA4P22459 653 aa9.55□□□□□ -0.88
COPS3-211ENST00000495640 SCAF1Q9H7N4 1312 aaKnown RBP9.55□□□□□ -0.88
COPS3-211ENST00000495640 EHMT2Q96KQ7 1210 aa9.37□□□□□ -0.91
COPS3-211ENST00000495640 PPP4R3CPQ6ZMV5 832 aa9.34□□□□□ -0.91
COPS3-211ENST00000495640 HOXD11P31277 338 aaPredicted RBP9.33□□□□□ -0.92
COPS3-211ENST00000495640 CACNB1Q02641 598 aaPredicted RBP9.32□□□□□ -0.92
COPS3-211ENST00000495640 RNF39Q9H2S5 420 aa9.23□□□□□ -0.93
COPS3-211ENST00000495640 DCAF8L1A6NGE4 600 aa9.22□□□□□ -0.93
COPS3-211ENST00000495640 CNKSR2Q8WXI2 1034 aa9.19□□□□□ -0.94
COPS3-211ENST00000495640 RNF216Q9NWF9 866 aaPredicted RBP9.17□□□□□ -0.94
COPS3-211ENST00000495640 CSRNP3Q8WYN3 585 aa9.14□□□□□ -0.95
COPS3-211ENST00000495640 SLC4A1APQ9BWU0 796 aaKnown RBP9.12□□□□□ -0.95
COPS3-211ENST00000495640 NCBP3Q53F19 620 aaKnown RBP9.04□□□□□ -0.96
COPS3-211ENST00000495640 C1QBPQ07021 282 aaKnown RBP9.03□□□□□ -0.96
COPS3-211ENST00000495640 DNAJC5BQ9UF47 199 aa9.03□□□□□ -0.96
COPS3-211ENST00000495640 NPM3O75607 178 aaKnown RBP9□□□□□ -0.97
COPS3-211ENST00000495640 ZBTB22O15209 634 aa8.85□□□□□ -0.99
COPS3-211ENST00000495640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.77□□□□□ -1.01
COPS3-211ENST00000495640 U3KPZ7 1027 aaPredicted RBP8.69□□□□□ -1.02
COPS3-211ENST00000495640 FOXD4L1Q9NU39 408 aa8.63□□□□□ -1.03
COPS3-211ENST00000495640 SPINK5Q9NQ38 1064 aaPredicted RBP8.6□□□□□ -1.03
COPS3-211ENST00000495640 DSG3P32926 999 aa8.58□□□□□ -1.04
COPS3-211ENST00000495640 SLC4A2P04920 1241 aa8.52□□□□□ -1.05
COPS3-211ENST00000495640 CAPN15O75808 1086 aa8.5□□□□□ -1.05
COPS3-211ENST00000495640 POTEHQ6S545 545 aa8.45□□□□□ -1.06
COPS3-211ENST00000495640 ABCB7O75027 752 aa8.33□□□□□ -1.08
COPS3-211ENST00000495640 TRHP20396 242 aaPredicted RBP8.33□□□□□ -1.08
COPS3-211ENST00000495640 ZNF219Q9P2Y4 722 aaPredicted RBP8.32□□□□□ -1.08
COPS3-211ENST00000495640 ATXN8OSP0DMR3 200 aa8.28□□□□□ -1.08
COPS3-211ENST00000495640 RTN4Q9NQC3 1192 aaKnown RBP8.27□□□□□ -1.09
COPS3-211ENST00000495640 MYCNP04198 464 aaPredicted RBP8.26□□□□□ -1.09
COPS3-211ENST00000495640 APLP2Q06481 763 aa8.26□□□□□ -1.09
COPS3-211ENST00000495640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.25□□□□□ -1.09
COPS3-211ENST00000495640 HNRNPUL2Q1KMD3 747 aaKnown RBP8.25□□□□□ -1.09
COPS3-211ENST00000495640 AMER1Q5JTC6 1135 aaPredicted RBP8.22□□□□□ -1.09
COPS3-211ENST00000495640 SAMD1Q6SPF0 538 aaPredicted RBP8.22□□□□□ -1.09
COPS3-211ENST00000495640 SLC24A1O60721 1099 aa8.17□□□□□ -1.1
COPS3-211ENST00000495640 FKBP8Q14318 412 aa8.16□□□□□ -1.1
COPS3-211ENST00000495640 RBM42Q9BTD8 480 aaKnown RBP8.1□□□□□ -1.11
COPS3-211ENST00000495640 ATF5Q9Y2D1 282 aaPredicted RBP8.09□□□□□ -1.11
COPS3-211ENST00000495640 POLA2Q14181 598 aa8.08□□□□□ -1.12
COPS3-211ENST00000495640 CHRDL2Q6WN34 429 aa8.04□□□□□ -1.12
COPS3-211ENST00000495640 AKT1S1Q96B36 256 aa7.92□□□□□ -1.14
COPS3-211ENST00000495640 OSCARQ8IYS5 282 aa7.88□□□□□ -1.15
COPS3-211ENST00000495640 ZBTB12Q9Y330 459 aaPredicted RBP7.87□□□□□ -1.15
COPS3-211ENST00000495640 REM2Q8IYK8 340 aaPredicted RBP7.86□□□□□ -1.15
COPS3-211ENST00000495640 PIP4P2Q8N4L2 257 aa7.84□□□□□ -1.15
COPS3-211ENST00000495640 SP7Q8TDD2 431 aaPredicted RBP7.84□□□□□ -1.15
COPS3-211ENST00000495640 PITPNM1O00562 1244 aa7.8□□□□□ -1.16
COPS3-211ENST00000495640 FXR2P51116 673 aaKnown RBP eCLIP7.78□□□□□ -1.16
COPS3-211ENST00000495640 PROM2Q8N271 834 aa7.77□□□□□ -1.17
COPS3-211ENST00000495640 MKRN4PQ13434 485 aaPredicted RBP7.76□□□□□ -1.17
COPS3-211ENST00000495640 SPDYE4A6NLX3 237 aa7.72□□□□□ -1.17
COPS3-211ENST00000495640 FBXO3Q9UK99 471 aa7.71□□□□□ -1.18
COPS3-211ENST00000495640 EVX2Q03828 476 aa7.68□□□□□ -1.18
COPS3-211ENST00000495640 SPDYE2BA6NHP3 402 aa7.66□□□□□ -1.18
COPS3-211ENST00000495640 HAX1O00165 279 aa7.66□□□□□ -1.18
COPS3-211ENST00000495640 SPDYE6P0CI01 402 aa7.66□□□□□ -1.18
COPS3-211ENST00000495640 SPDYE2Q495Y8 402 aa7.66□□□□□ -1.18
COPS3-211ENST00000495640 VASPP50552 380 aaPredicted RBP7.64□□□□□ -1.19
COPS3-211ENST00000495640 IFNLR1Q8IU57 520 aaPredicted RBP7.61□□□□□ -1.19
COPS3-211ENST00000495640 PLCB2Q00722 1185 aa7.6□□□□□ -1.19
COPS3-211ENST00000495640 SSUH2Q9Y2M2 353 aa7.6□□□□□ -1.19
COPS3-211ENST00000495640 FBLN2P98095 1184 aa7.59□□□□□ -1.19
COPS3-211ENST00000495640 PRKAR2AP13861 404 aaKnown RBP7.55□□□□□ -1.2
COPS3-211ENST00000495640 PKD2Q13563 968 aa7.55□□□□□ -1.2
COPS3-211ENST00000495640 C19orf67A6NJJ6 358 aa7.54□□□□□ -1.2
COPS3-211ENST00000495640 SPDYE1Q8NFV5 336 aaPredicted RBP7.54□□□□□ -1.2
COPS3-211ENST00000495640 ZNF692Q9BU19 519 aaPredicted RBP7.5□□□□□ -1.21
COPS3-211ENST00000495640 CLEC11AQ9Y240 323 aa7.5□□□□□ -1.21
COPS3-211ENST00000495640 CHADLQ6NUI6 762 aa7.46□□□□□ -1.22
COPS3-211ENST00000495640 GABBR2O75899 941 aa7.44□□□□□ -1.22
COPS3-211ENST00000495640 HAP1P54257 671 aaPredicted RBP7.42□□□□□ -1.22
COPS3-211ENST00000495640 PABPN1Q86U42 306 aaKnown RBP eCLIP7.42□□□□□ -1.22
COPS3-211ENST00000495640 DCAF8L2P0C7V8 631 aa7.4□□□□□ -1.22
COPS3-211ENST00000495640 VSIG10Q8N0Z9 540 aa7.38□□□□□ -1.23
COPS3-211ENST00000495640 SPOCK2Q92563 424 aa7.38□□□□□ -1.23
COPS3-211ENST00000495640 NPM1P06748 294 aaKnown RBP eCLIP7.37□□□□□ -1.23
COPS3-211ENST00000495640 PRR29P0C7W0 189 aa7.36□□□□□ -1.23
COPS3-211ENST00000495640 POTEIP0CG38 1075 aa7.36□□□□□ -1.23
COPS3-211ENST00000495640 BBXQ8WY36 941 aaPredicted RBP7.34□□□□□ -1.23
COPS3-211ENST00000495640 STAG3Q9UJ98 1225 aa7.34□□□□□ -1.23
COPS3-211ENST00000495640 LHX8Q68G74 356 aa7.33□□□□□ -1.24
COPS3-211ENST00000495640 BCANQ96GW7 911 aa7.33□□□□□ -1.24
COPS3-211ENST00000495640 ECM2O94769 699 aaPredicted RBP7.32□□□□□ -1.24
COPS3-211ENST00000495640 KLHL34Q8N239 644 aa7.32□□□□□ -1.24
COPS3-211ENST00000495640 KDM2AQ9Y2K7 1162 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 170.6 ms