RNA–Protein interactions for RNA: ENST00000608988.5

SHANK2-220, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 5

Gene SHANK2, Length 1,879 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-220ENST00000608988 NISCHQ9Y2I1 1504 aa44.87■■■■■ 4.77
SHANK2-220ENST00000608988 SHROOM4Q9ULL8 1493 aa38.17■■■■□ 3.7
SHANK2-220ENST00000608988 ZCCHC6Q5VYS8 1495 aaKnown RBP38.12■■■■□ 3.69
SHANK2-220ENST00000608988 CCDC180Q9P1Z9 1646 aa38.11■■■■□ 3.69
SHANK2-220ENST00000608988 SUPT5HO00267 1087 aaKnown RBP37.76■■■■□ 3.64
SHANK2-220ENST00000608988 HRCP23327 699 aa37.25■■■■□ 3.55
SHANK2-220ENST00000608988 CHIC1Q5VXU3 224 aa37.25■■■■□ 3.55
SHANK2-220ENST00000608988 MYO15BQ96JP2 1530 aa37.2■■■■□ 3.55
SHANK2-220ENST00000608988 DCAF1Q9Y4B6 1507 aa37.08■■■■□ 3.53
SHANK2-220ENST00000608988 PCGF6Q9BYE7 350 aa36.54■■■■□ 3.44
SHANK2-220ENST00000608988 DCAF8L2P0C7V8 631 aa36.43■■■■□ 3.42
SHANK2-220ENST00000608988 ABCC9O60706 1549 aa36.12■■■■□ 3.37
SHANK2-220ENST00000608988 TRIM26Q12899 539 aaPredicted RBP36.01■■■■□ 3.35
SHANK2-220ENST00000608988 PPARGC1BQ86YN6 1023 aaKnown RBP35.96■■■■□ 3.35
SHANK2-220ENST00000608988 LOC105371045A0A1W2PR82 267 aa35.92■■■■□ 3.34
SHANK2-220ENST00000608988 ZEB1P37275 1124 aaPredicted RBP35.73■■■■□ 3.31
SHANK2-220ENST00000608988 RSF1Q96T23 1441 aaPredicted RBP35.65■■■■□ 3.3
SHANK2-220ENST00000608988 RB1CC1Q8TDY2 1594 aa35.52■■■■□ 3.28
SHANK2-220ENST00000608988 SCRIBQ14160 1630 aa35.41■■■■□ 3.26
SHANK2-220ENST00000608988 TRIM41Q8WV44 630 aa35.33■■■■□ 3.25
SHANK2-220ENST00000608988 PELP1Q8IZL8 1130 aaKnown RBP35.11■■■■□ 3.21
SHANK2-220ENST00000608988 NACADO15069 1562 aa35.01■■■■□ 3.2
SHANK2-220ENST00000608988 FAM9AQ8IZU1 332 aaPredicted RBP34.78■■■■□ 3.16
SHANK2-220ENST00000608988 MROH2BQ7Z745 1585 aa34.77■■■■□ 3.16
SHANK2-220ENST00000608988 CECR2Q9BXF3 1484 aa34.73■■■■□ 3.15
SHANK2-220ENST00000608988 BAZ1AQ9NRL2 1556 aaPredicted RBP34.68■■■■□ 3.14
SHANK2-220ENST00000608988 EIF4G1Q04637 1599 aaKnown RBP34.64■■■■□ 3.14
SHANK2-220ENST00000608988 WIZO95785 1651 aa34.61■■■■□ 3.13
SHANK2-220ENST00000608988 SCAF1Q9H7N4 1312 aaKnown RBP34.54■■■■□ 3.12
SHANK2-220ENST00000608988 WRNQ14191 1432 aaPredicted RBP eCLIP34.4■■■■□ 3.1
SHANK2-220ENST00000608988 TOP2AP11388 1531 aaKnown RBP34.29■■■■□ 3.08
SHANK2-220ENST00000608988 CCER1Q8TC90 406 aaPredicted RBP34.24■■■■□ 3.07
SHANK2-220ENST00000608988 EHMT2Q96KQ7 1210 aa34.22■■■■□ 3.07
SHANK2-220ENST00000608988 ACIN1Q9UKV3 1341 aaKnown RBP34.17■■■■□ 3.06
SHANK2-220ENST00000608988 EEA1Q15075 1411 aa34.14■■■■□ 3.06
SHANK2-220ENST00000608988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.13■■■■□ 3.05
SHANK2-220ENST00000608988 TNIKQ9UKE5 1360 aa34.07■■■■□ 3.04
SHANK2-220ENST00000608988 SMARCA4P51532 1647 aa34.06■■■■□ 3.04
SHANK2-220ENST00000608988 CEP162Q5TB80 1403 aa34.04■■■■□ 3.04
SHANK2-220ENST00000608988 SMARCA2P51531 1590 aa34.04■■■■□ 3.04
SHANK2-220ENST00000608988 CENPBP07199 599 aaPredicted RBP34■■■■□ 3.03
SHANK2-220ENST00000608988 CCDC88BA6NC98 1476 aa33.99■■■■□ 3.03
SHANK2-220ENST00000608988 ABCC8Q09428 1581 aa33.96■■■■□ 3.03
SHANK2-220ENST00000608988 DIEXFQ68CQ4 756 aaKnown RBP33.96■■■■□ 3.03
SHANK2-220ENST00000608988 NEUROD1Q13562 356 aa33.88■■■■□ 3.01
SHANK2-220ENST00000608988 UNC13AQ9UPW8 1703 aa33.84■■■■□ 3.01
SHANK2-220ENST00000608988 SOGA1O94964 1423 aa33.77■■■■□ 3
SHANK2-220ENST00000608988 GOLGA3Q08378 1498 aa33.76■■■■□ 3
SHANK2-220ENST00000608988 CSRNP3Q8WYN3 585 aa33.74■■■□□ 2.99
SHANK2-220ENST00000608988 MYT1Q01538 1121 aa33.67■■■□□ 2.98
SHANK2-220ENST00000608988 ZNF316A6NFI3 1004 aaPredicted RBP33.65■■■□□ 2.98
SHANK2-220ENST00000608988 GTF3C3Q9Y5Q9 886 aa33.63■■■□□ 2.97
SHANK2-220ENST00000608988 KIF21BO75037 1637 aa33.58■■■□□ 2.97
SHANK2-220ENST00000608988 PEG3Q9GZU2 1588 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 BICRAQ9NZM4 1560 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 CEP164Q9UPV0 1460 aa33.53■■■□□ 2.96
SHANK2-220ENST00000608988 RUSC2Q8N2Y8 1516 aa33.51■■■□□ 2.96
SHANK2-220ENST00000608988 UBTFP17480 764 aaKnown RBP33.51■■■□□ 2.96
SHANK2-220ENST00000608988 BAZ1BQ9UIG0 1483 aaKnown RBP33.4■■■□□ 2.94
SHANK2-220ENST00000608988 TTBK1Q5TCY1 1321 aaPredicted RBP33.36■■■□□ 2.93
SHANK2-220ENST00000608988 VPS8Q8N3P4 1428 aa33.32■■■□□ 2.92
SHANK2-220ENST00000608988 CLIP1P30622 1438 aa33.3■■■□□ 2.92
SHANK2-220ENST00000608988 SYNJ1O43426 1573 aa33.27■■■□□ 2.92
SHANK2-220ENST00000608988 PABPN1Q86U42 306 aaKnown RBP eCLIP33.13■■■□□ 2.89
SHANK2-220ENST00000608988 CLSPNQ9HAW4 1339 aa33.13■■■□□ 2.89
SHANK2-220ENST00000608988 APLP2Q06481 763 aa33.05■■■□□ 2.88
SHANK2-220ENST00000608988 MIER1Q8N108 512 aa33.05■■■□□ 2.88
SHANK2-220ENST00000608988 HNRNPUL2Q1KMD3 747 aaKnown RBP33.04■■■□□ 2.88
SHANK2-220ENST00000608988 RAPGEF2Q9Y4G8 1499 aa32.99■■■□□ 2.87
SHANK2-220ENST00000608988 ATAD2BQ9ULI0 1458 aa32.97■■■□□ 2.87
SHANK2-220ENST00000608988 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
SHANK2-220ENST00000608988 ERICH3Q5RHP9 1530 aa32.95■■■□□ 2.87
SHANK2-220ENST00000608988 YTHDC1Q96MU7 727 aaKnown RBP32.92■■■□□ 2.86
SHANK2-220ENST00000608988 BIVM-ERCC5R4GMW8 1640 aa32.89■■■□□ 2.86
SHANK2-220ENST00000608988 PRXQ9BXM0 1461 aa32.77■■■□□ 2.84
SHANK2-220ENST00000608988 DHX57Q6P158 1386 aaKnown RBP32.76■■■□□ 2.83
SHANK2-220ENST00000608988 ARAP1Q96P48 1450 aa32.71■■■□□ 2.83
SHANK2-220ENST00000608988 CUX2O14529 1486 aa32.7■■■□□ 2.83
SHANK2-220ENST00000608988 RRBP1Q9P2E9 1410 aaKnown RBP32.68■■■□□ 2.82
SHANK2-220ENST00000608988 KIF27Q86VH2 1401 aa32.45■■■□□ 2.79
SHANK2-220ENST00000608988 HMGXB3Q12766 1538 aa32.45■■■□□ 2.78
SHANK2-220ENST00000608988 CCNB3Q8WWL7 1395 aa32.4■■■□□ 2.78
SHANK2-220ENST00000608988 CUX1P39880 1505 aa32.38■■■□□ 2.77
SHANK2-220ENST00000608988 MAP3K1Q13233 1512 aa32.38■■■□□ 2.77
SHANK2-220ENST00000608988 KANK4Q5T7N3 995 aaPredicted RBP32.37■■■□□ 2.77
SHANK2-220ENST00000608988 SUPT16HQ9Y5B9 1047 aaKnown RBP32.35■■■□□ 2.77
SHANK2-220ENST00000608988 RANGAP1P46060 587 aaPredicted RBP32.33■■■□□ 2.77
SHANK2-220ENST00000608988 NCAPD3P42695 1498 aa32.32■■■□□ 2.76
SHANK2-220ENST00000608988 ARHGAP35Q9NRY4 1499 aa32.31■■■□□ 2.76
SHANK2-220ENST00000608988 CFTRP13569 1480 aa32.19■■■□□ 2.74
SHANK2-220ENST00000608988 TIAM1Q13009 1591 aa32.17■■■□□ 2.74
SHANK2-220ENST00000608988 MAPKBP1O60336 1514 aa32.15■■■□□ 2.74
SHANK2-220ENST00000608988 PRDM2Q13029 1718 aa32.15■■■□□ 2.74
SHANK2-220ENST00000608988 RAB3GAP2Q9H2M9 1393 aa32.11■■■□□ 2.73
SHANK2-220ENST00000608988 SETD5Q9C0A6 1442 aa32.06■■■□□ 2.72
SHANK2-220ENST00000608988 TIMELESSQ9UNS1 1208 aa32.04■■■□□ 2.72
SHANK2-220ENST00000608988 CC2D2AQ9P2K1 1620 aa32.01■■■□□ 2.71
SHANK2-220ENST00000608988 LRRC9Q6ZRR7 1453 aa32■■■□□ 2.71
SHANK2-220ENST00000608988 CFAP43Q8NDM7 1665 aa31.98■■■□□ 2.71
SHANK2-220ENST00000608988 TSHZ2Q9NRE2 1034 aa31.97■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms