Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC25.28■■□□□ 1.64
VPS13AQ96RL7 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
VPS13AQ96RL7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.28■■□□□ 1.64
VPS13AQ96RL7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
VPS13AQ96RL7 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS13AQ96RL7 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS13AQ96RL7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS13AQ96RL7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
VPS13AQ96RL7 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.27■■□□□ 1.64
VPS13AQ96RL7 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
VPS13AQ96RL7 MIR4508-201ENST00000584178 70 ntBASIC25.26■■□□□ 1.63
VPS13AQ96RL7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
VPS13AQ96RL7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.26■■□□□ 1.63
VPS13AQ96RL7 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
VPS13AQ96RL7 AC239859.2-201ENST00000444165 318 ntBASIC25.26■■□□□ 1.63
VPS13AQ96RL7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
VPS13AQ96RL7 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS13AQ96RL7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC25.25■■□□□ 1.63
VPS13AQ96RL7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS13AQ96RL7 MIR638-201ENST00000385237 100 ntBASIC25.25■■□□□ 1.63
VPS13AQ96RL7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS13AQ96RL7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
VPS13AQ96RL7 REST-210ENST00000638187 1334 ntTSL 5 BASIC25.24■■□□□ 1.63
VPS13AQ96RL7 YBX1P4-201ENST00000392794 808 ntBASIC25.24■■□□□ 1.63
VPS13AQ96RL7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.22■■□□□ 1.63
VPS13AQ96RL7 AC008406.3-201ENST00000620001 1374 ntBASIC25.22■■□□□ 1.63
VPS13AQ96RL7 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS13AQ96RL7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS13AQ96RL7 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC25.22■■□□□ 1.63
VPS13AQ96RL7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.22■■□□□ 1.63
VPS13AQ96RL7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
VPS13AQ96RL7 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.63
VPS13AQ96RL7 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
VPS13AQ96RL7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC25.2■■□□□ 1.62
VPS13AQ96RL7 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS13AQ96RL7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.19■■□□□ 1.62
VPS13AQ96RL7 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS13AQ96RL7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC25.19■■□□□ 1.62
VPS13AQ96RL7 PVT1_1.1-201ENST00000615125 194 ntBASIC25.19■■□□□ 1.62
VPS13AQ96RL7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS13AQ96RL7 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
VPS13AQ96RL7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
VPS13AQ96RL7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.18■■□□□ 1.62
VPS13AQ96RL7 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.18■■□□□ 1.62
VPS13AQ96RL7 AC126177.7-201ENST00000547904 679 ntBASIC25.18■■□□□ 1.62
VPS13AQ96RL7 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
VPS13AQ96RL7 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.16■■□□□ 1.62
VPS13AQ96RL7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
VPS13AQ96RL7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
VPS13AQ96RL7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 Z92544.1-202ENST00000571933 1220 ntBASIC25.15■■□□□ 1.62
VPS13AQ96RL7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
VPS13AQ96RL7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
VPS13AQ96RL7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.14■■□□□ 1.62
VPS13AQ96RL7 AC139795.1-202ENST00000500444 432 ntBASIC25.14■■□□□ 1.62
VPS13AQ96RL7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.14■■□□□ 1.62
VPS13AQ96RL7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
VPS13AQ96RL7 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.13■■□□□ 1.61
VPS13AQ96RL7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
VPS13AQ96RL7 AC074183.2-201ENST00000623112 922 ntBASIC25.12■■□□□ 1.61
VPS13AQ96RL7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.12■■□□□ 1.61
VPS13AQ96RL7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC25.12■■□□□ 1.61
VPS13AQ96RL7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
VPS13AQ96RL7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.11■■□□□ 1.61
VPS13AQ96RL7 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.11■■□□□ 1.61
VPS13AQ96RL7 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.11■■□□□ 1.61
VPS13AQ96RL7 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
VPS13AQ96RL7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.1■■□□□ 1.61
VPS13AQ96RL7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.1■■□□□ 1.61
VPS13AQ96RL7 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.1■■□□□ 1.61
VPS13AQ96RL7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.09■■□□□ 1.61
VPS13AQ96RL7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
VPS13AQ96RL7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
VPS13AQ96RL7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC25.08■■□□□ 1.61
VPS13AQ96RL7 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
VPS13AQ96RL7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.07■■□□□ 1.6
VPS13AQ96RL7 AC093536.1-201ENST00000569153 554 ntBASIC25.07■■□□□ 1.6
VPS13AQ96RL7 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.07■■□□□ 1.6
VPS13AQ96RL7 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms