Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.96■■■■□ 3.19
VPS13AQ96RL7 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.68■■■■□ 3.14
VPS13AQ96RL7 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.52■■■■□ 3.12
VPS13AQ96RL7 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
VPS13AQ96RL7 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.66■■■□□ 2.98
VPS13AQ96RL7 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
VPS13AQ96RL7 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
VPS13AQ96RL7 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
VPS13AQ96RL7 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.34■■■□□ 2.93
VPS13AQ96RL7 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
VPS13AQ96RL7 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.29■■■□□ 2.92
VPS13AQ96RL7 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
VPS13AQ96RL7 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC33.07■■■□□ 2.89
VPS13AQ96RL7 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.01■■■□□ 2.87
VPS13AQ96RL7 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.87■■■□□ 2.85
VPS13AQ96RL7 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
VPS13AQ96RL7 AL356512.1-201ENST00000607453 1739 ntBASIC32.78■■■□□ 2.84
VPS13AQ96RL7 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
VPS13AQ96RL7 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
VPS13AQ96RL7 AC006077.2-201ENST00000623591 457 ntBASIC32.35■■■□□ 2.77
VPS13AQ96RL7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.34■■■□□ 2.77
VPS13AQ96RL7 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.26■■■□□ 2.75
VPS13AQ96RL7 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
VPS13AQ96RL7 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
VPS13AQ96RL7 ZNRF2P1-201ENST00000441407 443 ntBASIC32.19■■■□□ 2.74
VPS13AQ96RL7 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.18■■■□□ 2.74
VPS13AQ96RL7 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.16■■■□□ 2.74
VPS13AQ96RL7 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
VPS13AQ96RL7 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC32.04■■■□□ 2.72
VPS13AQ96RL7 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.03■■■□□ 2.72
VPS13AQ96RL7 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.93■■■□□ 2.7
VPS13AQ96RL7 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
VPS13AQ96RL7 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.61■■■□□ 2.65
VPS13AQ96RL7 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
VPS13AQ96RL7 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.62
VPS13AQ96RL7 AC015813.7-201ENST00000623294 581 ntBASIC31.44■■■□□ 2.62
VPS13AQ96RL7 AP002365.1-201ENST00000603448 772 ntBASIC31.4■■■□□ 2.62
VPS13AQ96RL7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC31.27■■■□□ 2.6
VPS13AQ96RL7 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC31.27■■■□□ 2.6
VPS13AQ96RL7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC31.27■■■□□ 2.6
VPS13AQ96RL7 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC31.2■■■□□ 2.58
VPS13AQ96RL7 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
VPS13AQ96RL7 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
VPS13AQ96RL7 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC31.03■■■□□ 2.56
VPS13AQ96RL7 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
VPS13AQ96RL7 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.01■■■□□ 2.55
VPS13AQ96RL7 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31■■■□□ 2.55
VPS13AQ96RL7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.99■■■□□ 2.55
VPS13AQ96RL7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
VPS13AQ96RL7 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC30.97■■■□□ 2.55
VPS13AQ96RL7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
VPS13AQ96RL7 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.93■■■□□ 2.54
VPS13AQ96RL7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
VPS13AQ96RL7 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.85■■■□□ 2.53
VPS13AQ96RL7 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.82■■■□□ 2.53
VPS13AQ96RL7 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.8■■■□□ 2.52
VPS13AQ96RL7 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC30.77■■■□□ 2.52
VPS13AQ96RL7 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
VPS13AQ96RL7 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
VPS13AQ96RL7 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
VPS13AQ96RL7 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.71■■■□□ 2.51
VPS13AQ96RL7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.6■■■□□ 2.49
VPS13AQ96RL7 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
VPS13AQ96RL7 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
VPS13AQ96RL7 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
VPS13AQ96RL7 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.56■■■□□ 2.48
VPS13AQ96RL7 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.54■■■□□ 2.48
VPS13AQ96RL7 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
VPS13AQ96RL7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.52■■■□□ 2.48
VPS13AQ96RL7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
VPS13AQ96RL7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.49■■■□□ 2.47
VPS13AQ96RL7 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.47■■■□□ 2.47
VPS13AQ96RL7 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.47■■■□□ 2.47
VPS13AQ96RL7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
VPS13AQ96RL7 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
VPS13AQ96RL7 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
VPS13AQ96RL7 DYNLL1-208ENST00000550178 581 ntBASIC30.35■■■□□ 2.45
VPS13AQ96RL7 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
VPS13AQ96RL7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.34■■■□□ 2.45
VPS13AQ96RL7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.33■■■□□ 2.45
VPS13AQ96RL7 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
VPS13AQ96RL7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC30.32■■■□□ 2.44
VPS13AQ96RL7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC30.31■■■□□ 2.44
VPS13AQ96RL7 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.29■■■□□ 2.44
VPS13AQ96RL7 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
VPS13AQ96RL7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
VPS13AQ96RL7 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
VPS13AQ96RL7 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.24■■■□□ 2.43
VPS13AQ96RL7 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
VPS13AQ96RL7 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC30.21■■■□□ 2.43
VPS13AQ96RL7 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
VPS13AQ96RL7 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC30.17■■■□□ 2.42
VPS13AQ96RL7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
VPS13AQ96RL7 RPS2P35-201ENST00000443417 897 ntBASIC30.05■■■□□ 2.4
VPS13AQ96RL7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.05■■■□□ 2.4
VPS13AQ96RL7 RARRES2P7-201ENST00000567349 469 ntBASIC30.04■■■□□ 2.4
VPS13AQ96RL7 AC136428.2-201ENST00000563187 214 ntBASIC30.03■■■□□ 2.4
VPS13AQ96RL7 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
VPS13AQ96RL7 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.99■■■□□ 2.39
VPS13AQ96RL7 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.99■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms