Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TCAIM-209ENST00000462230 794 ntTSL 212.4□□□□□ -0.427e-7■■■□□ 16.6
UPF1Q92900 TCAIM-206ENST00000417768 1078 ntTSL 59.31□□□□□ -0.927e-7■■■□□ 16.6
UPF1Q92900 TCAIM-204ENST00000412611 3306 ntTSL 1 (best)8.93□□□□□ -0.987e-7■■■□□ 16.6
UPF1Q92900 TCAIM-207ENST00000431657 3449 ntTSL 28.67□□□□□ -1.027e-7■■■□□ 16.6
UPF1Q92900 HSD17B12-203ENST00000525736 4292 ntTSL 1 (best)9.44□□□□□ -0.92e-11■■■□□ 16.6
UPF1Q92900 HSD17B12-208ENST00000533090 2507 ntTSL 26.74□□□□□ -1.332e-11■■■□□ 16.6
UPF1Q92900 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.051e-6■■■□□ 16.6
UPF1Q92900 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.066e-7■■■□□ 16.6
UPF1Q92900 CTPS2-203ENST00000443824 4319 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.266e-7■■■□□ 16.6
UPF1Q92900 CTPS2-202ENST00000380241 3526 ntAPPRIS P1 TSL 1 (best) BASIC9.7□□□□□ -0.866e-7■■■□□ 16.6
UPF1Q92900 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC36.52■■■■□ 3.444e-7■■■□□ 16.6
UPF1Q92900 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.848e-9■■■□□ 16.6
UPF1Q92900 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.64■■■□□ 2.668e-9■■■□□ 16.6
UPF1Q92900 RAB43-208ENST00000615093 783 ntTSL 5 BASIC31.15■■■□□ 2.581e-7■■■□□ 16.6
UPF1Q92900 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.32■■■□□ 2.288e-9■■■□□ 16.6
UPF1Q92900 RAB43-206ENST00000457077 574 ntTSL 426.41■■□□□ 1.821e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-207ENST00000473420 922 ntTSL 325.2■■□□□ 1.624e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-215ENST00000498160 877 ntTSL 522.63■■□□□ 1.214e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-205ENST00000452977 818 ntTSL 522.46■■□□□ 1.194e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-214ENST00000497677 998 ntTSL 222.35■■□□□ 1.174e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-210ENST00000491064 786 ntTSL 321.27■■□□□ 14e-7■■■□□ 16.6
UPF1Q92900 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC21.06■□□□□ 0.964e-7■■■□□ 16.6
UPF1Q92900 CTDSP1-212ENST00000494067 362 ntTSL 319.49■□□□□ 0.714e-7■■■□□ 16.6
UPF1Q92900 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.624e-7■■■□□ 16.6
UPF1Q92900 RAB43-205ENST00000393308 4193 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.074e-7■■■□□ 16.6
UPF1Q92900 RAB43-203ENST00000393305 4215 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.094e-7■■■□□ 16.6
UPF1Q92900 RAB43-204ENST00000393307 4203 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.144e-7■■■□□ 16.6
UPF1Q92900 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.144e-7■■■□□ 16.6
UPF1Q92900 SOGA1-204ENST00000465671 4478 ntTSL 213.13□□□□□ -0.314e-7■■■□□ 16.6
UPF1Q92900 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.454e-7■■■□□ 16.6
UPF1Q92900 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.494e-7■■■□□ 16.6
UPF1Q92900 RFLNB-201ENST00000329099 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.644e-7■■■□□ 16.6
UPF1Q92900 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.98■■□□□ 1.919e-10■■■□□ 16.6
UPF1Q92900 CAPNS1-202ENST00000586851 616 ntTSL 37.41□□□□□ -1.229e-10■■■□□ 16.6
UPF1Q92900 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.28e-8■■■□□ 16.6
UPF1Q92900 STAT2-201ENST00000314128 3259 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.35e-8■■■□□ 16.6
UPF1Q92900 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.753e-7■■■□□ 16.6
UPF1Q92900 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.86□□□□□ -0.033e-7■■■□□ 16.6
UPF1Q92900 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.322e-7■■■□□ 16.5
UPF1Q92900 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.212e-7■■■□□ 16.5
UPF1Q92900 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.423e-7■■■□□ 16.5
UPF1Q92900 RNF157-204ENST00000589912 286 ntTSL 213.49□□□□□ -0.253e-7■■■□□ 16.5
UPF1Q92900 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.793e-8■■■□□ 16.5
UPF1Q92900 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.33e-7■■■□□ 16.5
UPF1Q92900 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.56□□□□□ -1.043e-8■■■□□ 16.5
UPF1Q92900 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.143e-8■■■□□ 16.5
UPF1Q92900 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.33e-28■■■□□ 16.5
UPF1Q92900 CLN6-208ENST00000567060 945 ntTSL 224.26■■□□□ 1.475e-10■■■□□ 16.5
UPF1Q92900 AP000781.2-203ENST00000528835 533 ntTSL 324.17■■□□□ 1.463e-7■■■□□ 16.5
UPF1Q92900 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.473e-7■■■□□ 16.5
UPF1Q92900 AP000781.2-201ENST00000534081 1639 ntTSL 216.95■□□□□ 0.33e-7■■■□□ 16.5
UPF1Q92900 AP000781.2-202ENST00000529411 681 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.133e-7■■■□□ 16.5
UPF1Q92900 SLC43A3-201ENST00000352187 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.293e-7■■■□□ 16.5
UPF1Q92900 SLC43A3-202ENST00000395123 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.313e-7■■■□□ 16.5
UPF1Q92900 SLC43A3-226ENST00000625097 1796 nt9.55□□□□□ -0.883e-7■■■□□ 16.5
UPF1Q92900 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.942e-12■■■□□ 16.5
UPF1Q92900 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.672e-12■■■□□ 16.5
UPF1Q92900 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.652e-12■■■□□ 16.5
UPF1Q92900 GYPC-205ENST00000464053 1805 ntTSL 1 (best)18.81■□□□□ 0.62e-12■■■□□ 16.5
UPF1Q92900 CANT1-214ENST00000592228 1546 ntTSL 519.81■□□□□ 0.768e-8■■■□□ 16.5
UPF1Q92900 CANT1-201ENST00000302345 3534 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.198e-8■■■□□ 16.5
UPF1Q92900 CANT1-216ENST00000620915 3337 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.528e-8■■■□□ 16.5
UPF1Q92900 CANT1-202ENST00000392446 3252 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.688e-8■■■□□ 16.5
UPF1Q92900 HYOU1-207ENST00000530473 2023 ntTSL 518.33■□□□□ 0.523e-6■■■□□ 16.5
UPF1Q92900 TMED10-205ENST00000556969 1314 ntTSL 29.78□□□□□ -0.844e-7■■■□□ 16.5
UPF1Q92900 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.231e-8■■■□□ 16.4
UPF1Q92900 LIMS1-203ENST00000393310 4392 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.681e-8■■■□□ 16.4
UPF1Q92900 PFKL-206ENST00000467315 1947 ntTSL 222.67■■□□□ 1.221e-9■■■□□ 16.4
UPF1Q92900 PFKL-205ENST00000466134 5986 ntTSL 219.88■□□□□ 0.771e-9■■■□□ 16.4
UPF1Q92900 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.511e-9■■■□□ 16.4
UPF1Q92900 PFKL-207ENST00000474114 6007 ntTSL 1 (best)17.78■□□□□ 0.441e-9■■■□□ 16.4
UPF1Q92900 PFKL-211ENST00000498841 3122 ntTSL 1 (best)17.49■□□□□ 0.391e-9■■■□□ 16.4
UPF1Q92900 PFKL-204ENST00000460521 2818 ntTSL 215.67■□□□□ 0.11e-9■■■□□ 16.4
UPF1Q92900 PFKL-202ENST00000397961 3390 ntTSL 1 (best)14.86□□□□□ -0.031e-9■■■□□ 16.4
UPF1Q92900 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.249e-7■■■□□ 16.4
UPF1Q92900 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.419e-7■■■□□ 16.4
UPF1Q92900 AP003108.2-202ENST00000541135 580 ntAPPRIS P1 TSL 427.98■■■□□ 2.071e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-206ENST00000544801 875 ntTSL 524.37■■□□□ 1.491e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-207ENST00000544880 591 ntTSL 423.28■■□□□ 1.321e-6■■■□□ 16.4
UPF1Q92900 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC19.99■□□□□ 0.791e-6■■■□□ 16.4
UPF1Q92900 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.481e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-203ENST00000536670 449 ntTSL 515.15■□□□□ 0.021e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-208ENST00000543044 883 ntTSL 3 BASIC13.34□□□□□ -0.271e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-201ENST00000544025 563 ntTSL 412.11□□□□□ -0.471e-6■■■□□ 16.4
UPF1Q92900 AP003108.2-205ENST00000538594 569 ntTSL 411.77□□□□□ -0.531e-6■■■□□ 16.4
UPF1Q92900 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.68■□□□□ 0.425e-28■■■□□ 16.4
UPF1Q92900 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.035e-28■■■□□ 16.4
UPF1Q92900 GINS4-209ENST00000523277 3873 ntTSL 5 BASIC9.93□□□□□ -0.826e-7■■■□□ 16.4
UPF1Q92900 GINS4-201ENST00000276533 3841 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.956e-7■■■□□ 16.4
UPF1Q92900 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC37.53■■■■□ 3.65e-7■■■□□ 16.4
UPF1Q92900 REPIN1-205ENST00000467980 899 ntTSL 336.22■■■■□ 3.395e-7■■■□□ 16.4
UPF1Q92900 REPIN1-213ENST00000488943 1262 ntTSL 531.68■■■□□ 2.665e-7■■■□□ 16.4
UPF1Q92900 REPIN1-219ENST00000522266 480 ntTSL 231.56■■■□□ 2.645e-7■■■□□ 16.4
UPF1Q92900 REPIN1-208ENST00000475514 1192 ntTSL 531.06■■■□□ 2.565e-7■■■□□ 16.4
UPF1Q92900 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC28.84■■■□□ 2.215e-7■■■□□ 16.4
UPF1Q92900 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC28.47■■■□□ 2.155e-7■■■□□ 16.4
UPF1Q92900 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.945e-7■■■□□ 16.4
UPF1Q92900 REPIN1-216ENST00000518462 621 ntTSL 424.46■■□□□ 1.515e-7■■■□□ 16.4
UPF1Q92900 REPIN1-218ENST00000519397 583 ntTSL 423.82■■□□□ 1.45e-7■■■□□ 16.4
UPF1Q92900 REPIN1-211ENST00000486714 824 ntTSL 520.93■□□□□ 0.945e-7■■■□□ 16.4
Retrieved 100 of 15,879 protein–RNA pairs in 181.7 ms