RNA–Protein interactions for RNA: ENST00000397961.6

PFKL-202, Transcript of phosphofructokinase, liver type, humanhuman

TSL 1 (best)

Gene PFKL, Length 3,390 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFKL-202ENST00000397961 NISCHQ9Y2I1 1504 aa29.25■■■□□ 2.27
PFKL-202ENST00000397961 SHROOM4Q9ULL8 1493 aa26.7■■□□□ 1.86
PFKL-202ENST00000397961 DCAF8L2P0C7V8 631 aa26.49■■□□□ 1.83
PFKL-202ENST00000397961 SUPT5HO00267 1087 aaKnown RBP26.27■■□□□ 1.8
PFKL-202ENST00000397961 EHMT2Q96KQ7 1210 aa24.99■■□□□ 1.59
PFKL-202ENST00000397961 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
PFKL-202ENST00000397961 PCGF6Q9BYE7 350 aa24.67■■□□□ 1.54
PFKL-202ENST00000397961 LOC105371045A0A1W2PR82 267 aa24.63■■□□□ 1.53
PFKL-202ENST00000397961 FAM9AQ8IZU1 332 aaPredicted RBP24.57■■□□□ 1.52
PFKL-202ENST00000397961 ZCCHC6Q5VYS8 1495 aaKnown RBP24.56■■□□□ 1.52
PFKL-202ENST00000397961 MYO15BQ96JP2 1530 aa24.43■■□□□ 1.5
PFKL-202ENST00000397961 PPARGC1BQ86YN6 1023 aaKnown RBP24.27■■□□□ 1.48
PFKL-202ENST00000397961 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
PFKL-202ENST00000397961 TTBK1Q5TCY1 1321 aaPredicted RBP24.04■■□□□ 1.44
PFKL-202ENST00000397961 TRIM41Q8WV44 630 aa24.01■■□□□ 1.43
PFKL-202ENST00000397961 ABCC9O60706 1549 aa24■■□□□ 1.43
PFKL-202ENST00000397961 HRCP23327 699 aa23.95■■□□□ 1.42
PFKL-202ENST00000397961 SCRIBQ14160 1630 aa23.83■■□□□ 1.41
PFKL-202ENST00000397961 RANGAP1P46060 587 aaPredicted RBP23.51■■□□□ 1.35
PFKL-202ENST00000397961 PABPN1Q86U42 306 aaKnown RBP eCLIP23.5■■□□□ 1.355e-7■■□□□ 12.8
PFKL-202ENST00000397961 TRIM26Q12899 539 aaPredicted RBP23.49■■□□□ 1.35
PFKL-202ENST00000397961 RSF1Q96T23 1441 aaPredicted RBP23.47■■□□□ 1.35
PFKL-202ENST00000397961 CECR2Q9BXF3 1484 aa23.38■■□□□ 1.33
PFKL-202ENST00000397961 RB1CC1Q8TDY2 1594 aa23.25■■□□□ 1.31
PFKL-202ENST00000397961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.23■■□□□ 1.31
PFKL-202ENST00000397961 DCAF1Q9Y4B6 1507 aa23.22■■□□□ 1.31
PFKL-202ENST00000397961 UBTFP17480 764 aaKnown RBP23.15■■□□□ 1.3
PFKL-202ENST00000397961 CCER1Q8TC90 406 aaPredicted RBP23.09■■□□□ 1.29
PFKL-202ENST00000397961 MROH2BQ7Z745 1585 aa23.06■■□□□ 1.28
PFKL-202ENST00000397961 WIZO95785 1651 aa22.91■■□□□ 1.26
PFKL-202ENST00000397961 HNRNPUL2Q1KMD3 747 aaKnown RBP22.81■■□□□ 1.24
PFKL-202ENST00000397961 ABCC8Q09428 1581 aa22.75■■□□□ 1.23
PFKL-202ENST00000397961 ZEB1P37275 1124 aaPredicted RBP22.71■■□□□ 1.23
PFKL-202ENST00000397961 NACADO15069 1562 aa22.67■■□□□ 1.22
PFKL-202ENST00000397961 YTHDC1Q96MU7 727 aaKnown RBP22.64■■□□□ 1.22
PFKL-202ENST00000397961 SOGA1O94964 1423 aa22.64■■□□□ 1.22
PFKL-202ENST00000397961 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
PFKL-202ENST00000397961 CSRNP3Q8WYN3 585 aa22.59■■□□□ 1.21
PFKL-202ENST00000397961 APLP2Q06481 763 aa22.55■■□□□ 1.2
PFKL-202ENST00000397961 RUSC2Q8N2Y8 1516 aa22.54■■□□□ 1.2
PFKL-202ENST00000397961 ITGAEP38570 1179 aa22.52■■□□□ 1.2
PFKL-202ENST00000397961 ATP1B4Q9UN42 357 aaPredicted RBP22.42■■□□□ 1.18
PFKL-202ENST00000397961 BAZ1AQ9NRL2 1556 aaPredicted RBP22.41■■□□□ 1.18
PFKL-202ENST00000397961 DIEXFQ68CQ4 756 aaKnown RBP22.39■■□□□ 1.17
PFKL-202ENST00000397961 CEP162Q5TB80 1403 aa22.39■■□□□ 1.17
PFKL-202ENST00000397961 SCAF1Q9H7N4 1312 aaKnown RBP22.35■■□□□ 1.17
PFKL-202ENST00000397961 NEUROD1Q13562 356 aa22.22■■□□□ 1.15
PFKL-202ENST00000397961 WRNQ14191 1432 aaPredicted RBP eCLIP22.2■■□□□ 1.14
PFKL-202ENST00000397961 SMARCA4P51532 1647 aa22.2■■□□□ 1.14
PFKL-202ENST00000397961 P3H3Q8IVL6 736 aa22.18■■□□□ 1.14
PFKL-202ENST00000397961 TOP2AP11388 1531 aaKnown RBP22.15■■□□□ 1.14
PFKL-202ENST00000397961 SMARCA2P51531 1590 aa22.14■■□□□ 1.13
PFKL-202ENST00000397961 GTF3C3Q9Y5Q9 886 aa22.12■■□□□ 1.13
PFKL-202ENST00000397961 TNIKQ9UKE5 1360 aa22.06■■□□□ 1.12
PFKL-202ENST00000397961 CLIP1P30622 1438 aa22.04■■□□□ 1.12
PFKL-202ENST00000397961 BAZ1BQ9UIG0 1483 aaKnown RBP22.01■■□□□ 1.11
PFKL-202ENST00000397961 CENPBP07199 599 aaPredicted RBP21.98■■□□□ 1.11
PFKL-202ENST00000397961 ZNF316A6NFI3 1004 aaPredicted RBP21.98■■□□□ 1.11
PFKL-202ENST00000397961 ACIN1Q9UKV3 1341 aaKnown RBP21.98■■□□□ 1.11
PFKL-202ENST00000397961 GOLGA3Q08378 1498 aa21.97■■□□□ 1.11
PFKL-202ENST00000397961 MIER1Q8N108 512 aa21.96■■□□□ 1.11
PFKL-202ENST00000397961 KANK4Q5T7N3 995 aaPredicted RBP21.95■■□□□ 1.1
PFKL-202ENST00000397961 UNC13AQ9UPW8 1703 aa21.94■■□□□ 1.1
PFKL-202ENST00000397961 RAPGEF2Q9Y4G8 1499 aa21.93■■□□□ 1.1
PFKL-202ENST00000397961 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
PFKL-202ENST00000397961 FAM50AQ14320 339 aaKnown RBP21.87■■□□□ 1.09
PFKL-202ENST00000397961 ARID3CA6NKF2 412 aa21.86■■□□□ 1.09
PFKL-202ENST00000397961 BICRAQ9NZM4 1560 aa21.84■■□□□ 1.09
PFKL-202ENST00000397961 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
PFKL-202ENST00000397961 HIRIP3Q9BW71 556 aaPredicted RBP21.81■■□□□ 1.08
PFKL-202ENST00000397961 EIF4G1Q04637 1599 aaKnown RBP21.8■■□□□ 1.08
PFKL-202ENST00000397961 CEP164Q9UPV0 1460 aa21.78■■□□□ 1.08
PFKL-202ENST00000397961 EEA1Q15075 1411 aa21.73■■□□□ 1.07
PFKL-202ENST00000397961 VPS8Q8N3P4 1428 aa21.65■■□□□ 1.06
PFKL-202ENST00000397961 CNGB1Q14028 1251 aaPredicted RBP21.63■■□□□ 1.05
PFKL-202ENST00000397961 SIN3AQ96ST3 1273 aa21.57■■□□□ 1.04
PFKL-202ENST00000397961 BCANQ96GW7 911 aa21.53■■□□□ 1.04
PFKL-202ENST00000397961 DNAJC5BQ9UF47 199 aa21.51■■□□□ 1.03
PFKL-202ENST00000397961 CUX2O14529 1486 aa21.5■■□□□ 1.03
PFKL-202ENST00000397961 KCNH8Q96L42 1107 aa21.5■■□□□ 1.03
PFKL-202ENST00000397961 KIF27Q86VH2 1401 aa21.48■■□□□ 1.03
PFKL-202ENST00000397961 KIF21BO75037 1637 aa21.47■■□□□ 1.03
PFKL-202ENST00000397961 DDX10Q13206 875 aaKnown RBP21.46■■□□□ 1.03
PFKL-202ENST00000397961 ARAP1Q96P48 1450 aa21.43■■□□□ 1.02
PFKL-202ENST00000397961 CHIC2Q9UKJ5 165 aa21.42■■□□□ 1.02
PFKL-202ENST00000397961 CUX1P39880 1505 aa21.35■■□□□ 1.01
PFKL-202ENST00000397961 DHX57Q6P158 1386 aaKnown RBP21.35■■□□□ 1.01
PFKL-202ENST00000397961 CARMIL1Q5VZK9 1371 aa21.35■■□□□ 1.01
PFKL-202ENST00000397961 CCNB3Q8WWL7 1395 aa21.32■■□□□ 1
PFKL-202ENST00000397961 TDRD9Q8NDG6 1382 aaKnown RBP21.28■■□□□ 1
PFKL-202ENST00000397961 TRIM52Q96A61 297 aa21.28■■□□□ 1
PFKL-202ENST00000397961 IGF1RP08069 1367 aa21.28■■□□□ 1
PFKL-202ENST00000397961 SENP3-EIF4A1A0A087X0R7 540 aa21.28■■□□□ 1
PFKL-202ENST00000397961 RAD54L2Q9Y4B4 1467 aa21.27■■□□□ 1
PFKL-202ENST00000397961 POLR3GLQ9BT43 218 aa21.26■□□□□ 0.99
PFKL-202ENST00000397961 FHOD3Q2V2M9 1422 aa21.26■□□□□ 0.99
PFKL-202ENST00000397961 RAB3GAP2Q9H2M9 1393 aa21.26■□□□□ 0.99
PFKL-202ENST00000397961 RRP7BPQ9NSQ0 103 aa21.25■□□□□ 0.99
PFKL-202ENST00000397961 FBLN2P98095 1184 aa21.25■□□□□ 0.99
PFKL-202ENST00000397961 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms