RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NISCHQ9Y2I1 1504 aa25.34■■□□□ 1.65
LIMS1-215ENST00000544547 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
LIMS1-215ENST00000544547 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
LIMS1-215ENST00000544547 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
LIMS1-215ENST00000544547 PCGF6Q9BYE7 350 aa23.31■■□□□ 1.32
LIMS1-215ENST00000544547 HRCP23327 699 aa22.94■■□□□ 1.26
LIMS1-215ENST00000544547 PELP1Q8IZL8 1130 aaKnown RBP22.88■■□□□ 1.25
LIMS1-215ENST00000544547 PPARGC1BQ86YN6 1023 aaKnown RBP22.8■■□□□ 1.24
LIMS1-215ENST00000544547 EHMT2Q96KQ7 1210 aa22.67■■□□□ 1.22
LIMS1-215ENST00000544547 FAM9AQ8IZU1 332 aaPredicted RBP22.21■■□□□ 1.15
LIMS1-215ENST00000544547 ZEB1P37275 1124 aaPredicted RBP22.2■■□□□ 1.14
LIMS1-215ENST00000544547 MYT1Q01538 1121 aa22.19■■□□□ 1.14
LIMS1-215ENST00000544547 CENPBP07199 599 aaPredicted RBP22.15■■□□□ 1.14
LIMS1-215ENST00000544547 CHIC1Q5VXU3 224 aa22.13■■□□□ 1.13
LIMS1-215ENST00000544547 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
LIMS1-215ENST00000544547 TRIM26Q12899 539 aaPredicted RBP22.06■■□□□ 1.12
LIMS1-215ENST00000544547 TTBK1Q5TCY1 1321 aaPredicted RBP22.04■■□□□ 1.12
LIMS1-215ENST00000544547 CCER1Q8TC90 406 aaPredicted RBP21.96■■□□□ 1.11
LIMS1-215ENST00000544547 YTHDC1Q96MU7 727 aaKnown RBP21.96■■□□□ 1.11
LIMS1-215ENST00000544547 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
LIMS1-215ENST00000544547 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
LIMS1-215ENST00000544547 SCAF1Q9H7N4 1312 aaKnown RBP21.65■■□□□ 1.06
LIMS1-215ENST00000544547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.51■■□□□ 1.03
LIMS1-215ENST00000544547 DIEXFQ68CQ4 756 aaKnown RBP21.48■■□□□ 1.03
LIMS1-215ENST00000544547 APLP2Q06481 763 aa21.47■■□□□ 1.03
LIMS1-215ENST00000544547 ACIN1Q9UKV3 1341 aaKnown RBP21.47■■□□□ 1.03
LIMS1-215ENST00000544547 MYO15BQ96JP2 1530 aa21.34■■□□□ 1.01
LIMS1-215ENST00000544547 NEUROD1Q13562 356 aa21.32■■□□□ 1
LIMS1-215ENST00000544547 ZCCHC6Q5VYS8 1495 aaKnown RBP21.24■□□□□ 0.99
LIMS1-215ENST00000544547 ERICH6Q7L0X2 663 aa21.21■□□□□ 0.99
LIMS1-215ENST00000544547 RANGAP1P46060 587 aaPredicted RBP21.19■□□□□ 0.98
LIMS1-215ENST00000544547 UBTFP17480 764 aaKnown RBP21.1■□□□□ 0.97
LIMS1-215ENST00000544547 DCAF1Q9Y4B6 1507 aa21■□□□□ 0.95
LIMS1-215ENST00000544547 HNRNPUL2Q1KMD3 747 aaKnown RBP20.97■□□□□ 0.95
LIMS1-215ENST00000544547 NEFLP07196 543 aa20.96■□□□□ 0.95
LIMS1-215ENST00000544547 BCANQ96GW7 911 aa20.88■□□□□ 0.93
LIMS1-215ENST00000544547 ZNF316A6NFI3 1004 aaPredicted RBP20.84■□□□□ 0.93
LIMS1-215ENST00000544547 ATP1B4Q9UN42 357 aaPredicted RBP20.79■□□□□ 0.92
LIMS1-215ENST00000544547 ABCC9O60706 1549 aa20.65■□□□□ 0.9
LIMS1-215ENST00000544547 CCDC180Q9P1Z9 1646 aa20.65■□□□□ 0.9
LIMS1-215ENST00000544547 MIER1Q8N108 512 aa20.59■□□□□ 0.89
LIMS1-215ENST00000544547 ITGAEP38570 1179 aa20.57■□□□□ 0.88
LIMS1-215ENST00000544547 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
LIMS1-215ENST00000544547 RSF1Q96T23 1441 aaPredicted RBP20.46■□□□□ 0.87
LIMS1-215ENST00000544547 PABPN1Q86U42 306 aaKnown RBP eCLIP20.41■□□□□ 0.86
LIMS1-215ENST00000544547 ANP32EQ9BTT0 268 aa20.37■□□□□ 0.85
LIMS1-215ENST00000544547 BCL11AQ9H165 835 aa20.37■□□□□ 0.85
LIMS1-215ENST00000544547 FKBP8Q14318 412 aa20.35■□□□□ 0.85
LIMS1-215ENST00000544547 CSRNP3Q8WYN3 585 aa20.3■□□□□ 0.84
LIMS1-215ENST00000544547 CNGB1Q14028 1251 aaPredicted RBP20.22■□□□□ 0.83
LIMS1-215ENST00000544547 RTL5Q5HYW3 569 aaPredicted RBP20.19■□□□□ 0.82
LIMS1-215ENST00000544547 CDK11AQ9UQ88 783 aaPredicted RBP20.19■□□□□ 0.82
LIMS1-215ENST00000544547 SUPT16HQ9Y5B9 1047 aaKnown RBP20.16■□□□□ 0.82
LIMS1-215ENST00000544547 CLSPNQ9HAW4 1339 aa20.15■□□□□ 0.82
LIMS1-215ENST00000544547 CECR2Q9BXF3 1484 aa20.09■□□□□ 0.81
LIMS1-215ENST00000544547 RB1CC1Q8TDY2 1594 aa20.07■□□□□ 0.8
LIMS1-215ENST00000544547 TRIM52Q96A61 297 aa20.06■□□□□ 0.8
LIMS1-215ENST00000544547 ANP32CO43423 234 aa20.02■□□□□ 0.8
LIMS1-215ENST00000544547 DDX10Q13206 875 aaKnown RBP20.01■□□□□ 0.79
LIMS1-215ENST00000544547 POLR3GLQ9BT43 218 aa19.99■□□□□ 0.79
LIMS1-215ENST00000544547 NBR1Q14596 966 aa19.98■□□□□ 0.79
LIMS1-215ENST00000544547 TSHZ2Q9NRE2 1034 aa19.98■□□□□ 0.79
LIMS1-215ENST00000544547 CEP162Q5TB80 1403 aa19.96■□□□□ 0.79
LIMS1-215ENST00000544547 IRX6P78412 446 aaPredicted RBP19.95■□□□□ 0.78
LIMS1-215ENST00000544547 FAM50AQ14320 339 aaKnown RBP19.92■□□□□ 0.78
LIMS1-215ENST00000544547 MYT1LQ9UL68 1186 aa19.92■□□□□ 0.78
LIMS1-215ENST00000544547 DAXXQ9UER7 740 aaPredicted RBP19.9■□□□□ 0.78
LIMS1-215ENST00000544547 MROH2BQ7Z745 1585 aa19.85■□□□□ 0.77
LIMS1-215ENST00000544547 EIF5BO60841 1220 aaKnown RBP19.85■□□□□ 0.77
LIMS1-215ENST00000544547 HIRIP3Q9BW71 556 aaPredicted RBP19.84■□□□□ 0.77
LIMS1-215ENST00000544547 HNRNPUQ00839 825 aaKnown RBP eCLIP19.82■□□□□ 0.76
LIMS1-215ENST00000544547 RBM19Q9Y4C8 960 aaKnown RBP19.81■□□□□ 0.76
LIMS1-215ENST00000544547 SOGA1O94964 1423 aa19.81■□□□□ 0.76
LIMS1-215ENST00000544547 P3H3Q8IVL6 736 aa19.78■□□□□ 0.76
LIMS1-215ENST00000544547 NPM2Q86SE8 214 aaKnown RBP19.76■□□□□ 0.75
LIMS1-215ENST00000544547 TNIKQ9UKE5 1360 aa19.75■□□□□ 0.75
LIMS1-215ENST00000544547 CLIP1P30622 1438 aa19.75■□□□□ 0.75
LIMS1-215ENST00000544547 ANP32AP39687 249 aaKnown RBP19.73■□□□□ 0.75
LIMS1-215ENST00000544547 CCDC88BA6NC98 1476 aa19.71■□□□□ 0.75
LIMS1-215ENST00000544547 ABCC8Q09428 1581 aa19.71■□□□□ 0.75
LIMS1-215ENST00000544547 RTN4Q9NQC3 1192 aaKnown RBP19.67■□□□□ 0.74
LIMS1-215ENST00000544547 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
LIMS1-215ENST00000544547 WIZO95785 1651 aa19.63■□□□□ 0.73
LIMS1-215ENST00000544547 NACADO15069 1562 aa19.63■□□□□ 0.73
LIMS1-215ENST00000544547 WRNQ14191 1432 aaPredicted RBP eCLIP19.62■□□□□ 0.73
LIMS1-215ENST00000544547 FAM9BQ8IZU0 186 aa19.61■□□□□ 0.73
LIMS1-215ENST00000544547 DEKP35659 375 aaKnown RBP19.6■□□□□ 0.73
LIMS1-215ENST00000544547 EEA1Q15075 1411 aa19.58■□□□□ 0.73
LIMS1-215ENST00000544547 KCNH8Q96L42 1107 aa19.58■□□□□ 0.72
LIMS1-215ENST00000544547 ZBTB47Q9UFB7 747 aaPredicted RBP19.57■□□□□ 0.72
LIMS1-215ENST00000544547 BAZ1AQ9NRL2 1556 aaPredicted RBP19.56■□□□□ 0.72
LIMS1-215ENST00000544547 RUSC2Q8N2Y8 1516 aa19.5■□□□□ 0.71
LIMS1-215ENST00000544547 SLC4A1APQ9BWU0 796 aaKnown RBP19.5■□□□□ 0.71
LIMS1-215ENST00000544547 CCDC136Q96JN2 1154 aa19.47■□□□□ 0.71
LIMS1-215ENST00000544547 SENP3-EIF4A1A0A087X0R7 540 aa19.46■□□□□ 0.71
LIMS1-215ENST00000544547 CEP164Q9UPV0 1460 aa19.46■□□□□ 0.71
LIMS1-215ENST00000544547 ARID3CA6NKF2 412 aa19.43■□□□□ 0.7
LIMS1-215ENST00000544547 B4GALNT3Q6L9W6 998 aa19.43■□□□□ 0.7
LIMS1-215ENST00000544547 ZNF326Q5BKZ1 582 aaKnown RBP19.4■□□□□ 0.7
LIMS1-215ENST00000544547 KANK4Q5T7N3 995 aaPredicted RBP19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 381 ms