RNA–Protein interactions for RNA: ENST00000464053.1

GYPC-205, Transcript of glycophorin C (Gerbich blood group), humanhuman

TSL 1 (best)

Gene GYPC, Length 1,805 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPC-205ENST00000464053 NISCHQ9Y2I1 1504 aa35.6■■■■□ 3.29
GYPC-205ENST00000464053 CCDC180Q9P1Z9 1646 aa31.14■■■□□ 2.57
GYPC-205ENST00000464053 ZCCHC6Q5VYS8 1495 aaKnown RBP29.84■■■□□ 2.37
GYPC-205ENST00000464053 ABCC9O60706 1549 aa29.7■■■□□ 2.34
GYPC-205ENST00000464053 DCAF8L2P0C7V8 631 aa29.5■■■□□ 2.31
GYPC-205ENST00000464053 DCAF1Q9Y4B6 1507 aa29.39■■■□□ 2.3
GYPC-205ENST00000464053 MYO15BQ96JP2 1530 aa29.13■■■□□ 2.25
GYPC-205ENST00000464053 NACADO15069 1562 aa29.04■■■□□ 2.24
GYPC-205ENST00000464053 SHROOM4Q9ULL8 1493 aa28.91■■■□□ 2.22
GYPC-205ENST00000464053 RB1CC1Q8TDY2 1594 aa28.85■■■□□ 2.21
GYPC-205ENST00000464053 SCRIBQ14160 1630 aa28.64■■■□□ 2.18
GYPC-205ENST00000464053 UNC13AQ9UPW8 1703 aa28.34■■■□□ 2.13
GYPC-205ENST00000464053 BICRAQ9NZM4 1560 aa28.05■■■□□ 2.08
GYPC-205ENST00000464053 PABPN1Q86U42 306 aaKnown RBP eCLIP27.97■■■□□ 2.07
GYPC-205ENST00000464053 CECR2Q9BXF3 1484 aa27.72■■■□□ 2.03
GYPC-205ENST00000464053 SUPT5HO00267 1087 aaKnown RBP27.67■■■□□ 2.02
GYPC-205ENST00000464053 RSF1Q96T23 1441 aaPredicted RBP27.53■■■□□ 2
GYPC-205ENST00000464053 MROH2BQ7Z745 1585 aa27.52■■■□□ 2
GYPC-205ENST00000464053 BAZ1AQ9NRL2 1556 aaPredicted RBP27.48■■□□□ 1.99
GYPC-205ENST00000464053 SMARCA4P51532 1647 aa27.42■■□□□ 1.98
GYPC-205ENST00000464053 WIZO95785 1651 aa27.29■■□□□ 1.96
GYPC-205ENST00000464053 EIF4G1Q04637 1599 aaKnown RBP27.2■■□□□ 1.94
GYPC-205ENST00000464053 PEG3Q9GZU2 1588 aa27.07■■□□□ 1.92
GYPC-205ENST00000464053 ATAD2BQ9ULI0 1458 aa27.02■■□□□ 1.92
GYPC-205ENST00000464053 SMARCA2P51531 1590 aa26.97■■□□□ 1.91
GYPC-205ENST00000464053 TOP2AP11388 1531 aaKnown RBP26.96■■□□□ 1.91
GYPC-205ENST00000464053 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
GYPC-205ENST00000464053 BAZ1BQ9UIG0 1483 aaKnown RBP26.85■■□□□ 1.89
GYPC-205ENST00000464053 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
GYPC-205ENST00000464053 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
GYPC-205ENST00000464053 CCDC88BA6NC98 1476 aa26.7■■□□□ 1.87
GYPC-205ENST00000464053 DNAJC5BQ9UF47 199 aa26.46■■□□□ 1.83
GYPC-205ENST00000464053 CHIC1Q5VXU3 224 aa26.36■■□□□ 1.81
GYPC-205ENST00000464053 CFTRP13569 1480 aa26.16■■□□□ 1.78
GYPC-205ENST00000464053 CADPSQ9ULU8 1353 aa26.12■■□□□ 1.77
GYPC-205ENST00000464053 ABCC8Q09428 1581 aa26.09■■□□□ 1.77
GYPC-205ENST00000464053 PRDM2Q13029 1718 aa26.03■■□□□ 1.76
GYPC-205ENST00000464053 NESP48681 1621 aa26.02■■□□□ 1.76
GYPC-205ENST00000464053 TRIM41Q8WV44 630 aa26.01■■□□□ 1.75
GYPC-205ENST00000464053 LAMC3Q9Y6N6 1575 aa25.94■■□□□ 1.74
GYPC-205ENST00000464053 WRNQ14191 1432 aaPredicted RBP eCLIP25.9■■□□□ 1.74
GYPC-205ENST00000464053 SYNJ1O43426 1573 aa25.84■■□□□ 1.73
GYPC-205ENST00000464053 FANCD2Q9BXW9 1451 aa25.83■■□□□ 1.73
GYPC-205ENST00000464053 CUX1P39880 1505 aa25.74■■□□□ 1.71
GYPC-205ENST00000464053 PDS5BQ9NTI5 1447 aa25.74■■□□□ 1.71
GYPC-205ENST00000464053 TOP2BQ02880 1626 aa25.73■■□□□ 1.71
GYPC-205ENST00000464053 BIVM-ERCC5R4GMW8 1640 aa25.71■■□□□ 1.71
GYPC-205ENST00000464053 KIF21AQ7Z4S6 1674 aa25.7■■□□□ 1.7
GYPC-205ENST00000464053 CEP164Q9UPV0 1460 aa25.68■■□□□ 1.7
GYPC-205ENST00000464053 FAM9AQ8IZU1 332 aaPredicted RBP25.57■■□□□ 1.68
GYPC-205ENST00000464053 DNMBPQ6XZF7 1577 aa25.56■■□□□ 1.68
GYPC-205ENST00000464053 URB2Q14146 1524 aaKnown RBP25.55■■□□□ 1.68
GYPC-205ENST00000464053 SOGA1O94964 1423 aa25.54■■□□□ 1.68
GYPC-205ENST00000464053 TOPBP1Q92547 1522 aa25.54■■□□□ 1.68
GYPC-205ENST00000464053 FGD5Q6ZNL6 1462 aa25.48■■□□□ 1.67
GYPC-205ENST00000464053 RUSC2Q8N2Y8 1516 aa25.48■■□□□ 1.67
GYPC-205ENST00000464053 ERCC6Q03468 1493 aa25.45■■□□□ 1.66
GYPC-205ENST00000464053 MRC2Q9UBG0 1479 aa25.44■■□□□ 1.66
GYPC-205ENST00000464053 POLA1P09884 1462 aaPredicted RBP25.39■■□□□ 1.66
GYPC-205ENST00000464053 LOC105371045A0A1W2PR82 267 aa25.38■■□□□ 1.65
GYPC-205ENST00000464053 EEA1Q15075 1411 aa25.35■■□□□ 1.65
GYPC-205ENST00000464053 RAD54L2Q9Y4B4 1467 aa25.33■■□□□ 1.65
GYPC-205ENST00000464053 WDR62O43379 1518 aa25.32■■□□□ 1.64
GYPC-205ENST00000464053 THOC2Q8NI27 1593 aaKnown RBP25.32■■□□□ 1.64
GYPC-205ENST00000464053 CSRNP3Q8WYN3 585 aa25.29■■□□□ 1.64
GYPC-205ENST00000464053 CUX2O14529 1486 aa25.27■■□□□ 1.64
GYPC-205ENST00000464053 KIF27Q86VH2 1401 aa25.25■■□□□ 1.63
GYPC-205ENST00000464053 EHMT2Q96KQ7 1210 aa25.25■■□□□ 1.63
GYPC-205ENST00000464053 ABCA10Q8WWZ4 1543 aa25.24■■□□□ 1.63
GYPC-205ENST00000464053 WDR97A6NE52 1622 aa25.2■■□□□ 1.63
GYPC-205ENST00000464053 TARBP1Q13395 1621 aaKnown RBP25.19■■□□□ 1.62
GYPC-205ENST00000464053 TDRD9Q8NDG6 1382 aaKnown RBP25.1■■□□□ 1.61
GYPC-205ENST00000464053 KIF21BO75037 1637 aa25.08■■□□□ 1.61
GYPC-205ENST00000464053 IGF1RP08069 1367 aa25.08■■□□□ 1.61
GYPC-205ENST00000464053 IFT140Q96RY7 1462 aa25.08■■□□□ 1.61
GYPC-205ENST00000464053 ABCA5Q8WWZ7 1642 aa25.07■■□□□ 1.6
GYPC-205ENST00000464053 PRXQ9BXM0 1461 aa25.04■■□□□ 1.6
GYPC-205ENST00000464053 GOLGA3Q08378 1498 aa25.03■■□□□ 1.6
GYPC-205ENST00000464053 GAPVD1Q14C86 1478 aa25.02■■□□□ 1.6
GYPC-205ENST00000464053 RAPGEF2Q9Y4G8 1499 aa25.02■■□□□ 1.6
GYPC-205ENST00000464053 ZNF608Q9ULD9 1512 aaPredicted RBP25.01■■□□□ 1.59
GYPC-205ENST00000464053 AQRO60306 1485 aaKnown RBP eCLIP24.99■■□□□ 1.592e-7■■■■□ 23.9
GYPC-205ENST00000464053 ERICH3Q5RHP9 1530 aa24.95■■□□□ 1.58
GYPC-205ENST00000464053 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
GYPC-205ENST00000464053 CARMIL1Q5VZK9 1371 aa24.94■■□□□ 1.58
GYPC-205ENST00000464053 PBRM1Q86U86 1689 aa24.92■■□□□ 1.58
GYPC-205ENST00000464053 TNIKQ9UKE5 1360 aa24.91■■□□□ 1.58
GYPC-205ENST00000464053 EIF4G3O43432 1585 aaKnown RBP24.9■■□□□ 1.58
GYPC-205ENST00000464053 CUL7Q14999 1698 aa24.89■■□□□ 1.57
GYPC-205ENST00000464053 GRIN2BQ13224 1484 aa24.84■■□□□ 1.57
GYPC-205ENST00000464053 CEP162Q5TB80 1403 aa24.77■■□□□ 1.56
GYPC-205ENST00000464053 ADAMTS12P58397 1594 aa24.75■■□□□ 1.55
GYPC-205ENST00000464053 SNAPC4Q5SXM2 1469 aa24.74■■□□□ 1.55
GYPC-205ENST00000464053 FHAD1B1AJZ9 1412 aa24.73■■□□□ 1.55
GYPC-205ENST00000464053 RANGAP1P46060 587 aaPredicted RBP24.66■■□□□ 1.54
GYPC-205ENST00000464053 MAGI1Q96QZ7 1491 aaPredicted RBP24.66■■□□□ 1.54
GYPC-205ENST00000464053 CLIP1P30622 1438 aa24.63■■□□□ 1.53
GYPC-205ENST00000464053 CTTNBP2Q8WZ74 1663 aa24.61■■□□□ 1.53
GYPC-205ENST00000464053 SYNJ2O15056 1496 aa24.57■■□□□ 1.52
GYPC-205ENST00000464053 GRIN2AQ12879 1464 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 165.2 ms