RNA–Protein interactions for RNA: ENST00000494067.5

CTDSP1-212, Transcript of CTD small phosphatase 1, humanhuman

TSL 3

Gene CTDSP1, Length 362 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-212ENST00000494067 NISCHQ9Y2I1 1504 aa33.51■■■□□ 2.95
CTDSP1-212ENST00000494067 CCDC180Q9P1Z9 1646 aa29.98■■■□□ 2.39
CTDSP1-212ENST00000494067 ABCC9O60706 1549 aa29.75■■■□□ 2.35
CTDSP1-212ENST00000494067 RB1CC1Q8TDY2 1594 aa28.37■■■□□ 2.13
CTDSP1-212ENST00000494067 NACADO15069 1562 aa28.22■■■□□ 2.11
CTDSP1-212ENST00000494067 DCAF8L2P0C7V8 631 aa28.03■■■□□ 2.08
CTDSP1-212ENST00000494067 UNC13AQ9UPW8 1703 aa27.92■■■□□ 2.06
CTDSP1-212ENST00000494067 MYO15BQ96JP2 1530 aa27.9■■■□□ 2.06
CTDSP1-212ENST00000494067 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
CTDSP1-212ENST00000494067 DNAJC5BQ9UF47 199 aa27.75■■■□□ 2.03
CTDSP1-212ENST00000494067 PABPN1Q86U42 306 aaKnown RBP eCLIP27.7■■■□□ 2.02
CTDSP1-212ENST00000494067 BICRAQ9NZM4 1560 aa27.68■■■□□ 2.02
CTDSP1-212ENST00000494067 DCAF1Q9Y4B6 1507 aa27.66■■■□□ 2.02
CTDSP1-212ENST00000494067 SCRIBQ14160 1630 aa27.38■■□□□ 1.97
CTDSP1-212ENST00000494067 SHROOM4Q9ULL8 1493 aa27.13■■□□□ 1.93
CTDSP1-212ENST00000494067 CC2D2AQ9P2K1 1620 aa26.91■■□□□ 1.9
CTDSP1-212ENST00000494067 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
CTDSP1-212ENST00000494067 CECR2Q9BXF3 1484 aa26.73■■□□□ 1.87
CTDSP1-212ENST00000494067 SMARCA4P51532 1647 aa26.13■■□□□ 1.77
CTDSP1-212ENST00000494067 NCAPD3P42695 1498 aa26.06■■□□□ 1.76
CTDSP1-212ENST00000494067 ATAD2BQ9ULI0 1458 aa26.04■■□□□ 1.76
CTDSP1-212ENST00000494067 BAZ1AQ9NRL2 1556 aaPredicted RBP25.95■■□□□ 1.75
CTDSP1-212ENST00000494067 SMARCA2P51531 1590 aa25.94■■□□□ 1.74
CTDSP1-212ENST00000494067 HMGXB3Q12766 1538 aa25.92■■□□□ 1.74
CTDSP1-212ENST00000494067 MROH2BQ7Z745 1585 aa25.88■■□□□ 1.73
CTDSP1-212ENST00000494067 PEG3Q9GZU2 1588 aa25.86■■□□□ 1.73
CTDSP1-212ENST00000494067 BAZ1BQ9UIG0 1483 aaKnown RBP25.77■■□□□ 1.72
CTDSP1-212ENST00000494067 NESP48681 1621 aa25.68■■□□□ 1.7
CTDSP1-212ENST00000494067 WIZO95785 1651 aa25.61■■□□□ 1.69
CTDSP1-212ENST00000494067 ERCC6Q03468 1493 aa25.57■■□□□ 1.68
CTDSP1-212ENST00000494067 CUX2O14529 1486 aa25.47■■□□□ 1.67
CTDSP1-212ENST00000494067 LAMC3Q9Y6N6 1575 aa25.44■■□□□ 1.66
CTDSP1-212ENST00000494067 THOC2Q8NI27 1593 aaKnown RBP25.39■■□□□ 1.66
CTDSP1-212ENST00000494067 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.65
CTDSP1-212ENST00000494067 RSF1Q96T23 1441 aaPredicted RBP25.37■■□□□ 1.65
CTDSP1-212ENST00000494067 CADPSQ9ULU8 1353 aa25.25■■□□□ 1.63
CTDSP1-212ENST00000494067 TOP2AP11388 1531 aaKnown RBP25.23■■□□□ 1.63
CTDSP1-212ENST00000494067 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.62
CTDSP1-212ENST00000494067 DNAJC5Q9H3Z4 198 aa25.17■■□□□ 1.62
CTDSP1-212ENST00000494067 CFTRP13569 1480 aa25.06■■□□□ 1.6
CTDSP1-212ENST00000494067 MRC2Q9UBG0 1479 aa25.05■■□□□ 1.6
CTDSP1-212ENST00000494067 WDR62O43379 1518 aa25.03■■□□□ 1.6
CTDSP1-212ENST00000494067 FANCD2Q9BXW9 1451 aa25■■□□□ 1.59
CTDSP1-212ENST00000494067 CEP164Q9UPV0 1460 aa24.99■■□□□ 1.59
CTDSP1-212ENST00000494067 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
CTDSP1-212ENST00000494067 PRDM2Q13029 1718 aa24.92■■□□□ 1.58
CTDSP1-212ENST00000494067 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
CTDSP1-212ENST00000494067 TOPBP1Q92547 1522 aa24.59■■□□□ 1.53
CTDSP1-212ENST00000494067 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
CTDSP1-212ENST00000494067 DNMBPQ6XZF7 1577 aa24.51■■□□□ 1.51
CTDSP1-212ENST00000494067 IFT140Q96RY7 1462 aa24.46■■□□□ 1.51
CTDSP1-212ENST00000494067 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
CTDSP1-212ENST00000494067 TARBP1Q13395 1621 aaKnown RBP24.41■■□□□ 1.5
CTDSP1-212ENST00000494067 EIF4G3O43432 1585 aaKnown RBP24.4■■□□□ 1.5
CTDSP1-212ENST00000494067 POLA1P09884 1462 aaPredicted RBP24.36■■□□□ 1.49
CTDSP1-212ENST00000494067 SUPT5HO00267 1087 aaKnown RBP24.34■■□□□ 1.49
CTDSP1-212ENST00000494067 CUX1P39880 1505 aa24.3■■□□□ 1.48
CTDSP1-212ENST00000494067 RAD54L2Q9Y4B4 1467 aa24.28■■□□□ 1.48
CTDSP1-212ENST00000494067 AQRO60306 1485 aaKnown RBP eCLIP24.27■■□□□ 1.486e-12■■■■■ 82.1
CTDSP1-212ENST00000494067 OSCARQ8IYS5 282 aa24.26■■□□□ 1.47
CTDSP1-212ENST00000494067 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
CTDSP1-212ENST00000494067 CHD1O14646 1710 aa24.2■■□□□ 1.46
CTDSP1-212ENST00000494067 SOGA1O94964 1423 aa24.18■■□□□ 1.46
CTDSP1-212ENST00000494067 TRIM41Q8WV44 630 aa24.16■■□□□ 1.46
CTDSP1-212ENST00000494067 WDR97A6NE52 1622 aa24.15■■□□□ 1.46
CTDSP1-212ENST00000494067 TDRD9Q8NDG6 1382 aaKnown RBP24.13■■□□□ 1.45
CTDSP1-212ENST00000494067 RIMBP3CA6NJZ7 1639 aa24.11■■□□□ 1.45
CTDSP1-212ENST00000494067 RIMBP3BA6NNM3 1639 aa24.11■■□□□ 1.45
CTDSP1-212ENST00000494067 RIMBP3Q9UFD9 1639 aa24.11■■□□□ 1.45
CTDSP1-212ENST00000494067 SNAPC4Q5SXM2 1469 aa24.04■■□□□ 1.44
CTDSP1-212ENST00000494067 ARHGEF11O15085 1522 aa24.02■■□□□ 1.44
CTDSP1-212ENST00000494067 PBRM1Q86U86 1689 aa23.99■■□□□ 1.43
CTDSP1-212ENST00000494067 SYNJ1O43426 1573 aa23.98■■□□□ 1.43
CTDSP1-212ENST00000494067 ABCA5Q8WWZ7 1642 aa23.97■■□□□ 1.43
CTDSP1-212ENST00000494067 BIVM-ERCC5R4GMW8 1640 aa23.97■■□□□ 1.43
CTDSP1-212ENST00000494067 ABCA10Q8WWZ4 1543 aa23.94■■□□□ 1.42
CTDSP1-212ENST00000494067 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
CTDSP1-212ENST00000494067 FBLN2P98095 1184 aa23.94■■□□□ 1.42
CTDSP1-212ENST00000494067 TOP2BQ02880 1626 aa23.94■■□□□ 1.42
CTDSP1-212ENST00000494067 MAGI1Q96QZ7 1491 aaPredicted RBP23.92■■□□□ 1.42
CTDSP1-212ENST00000494067 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
CTDSP1-212ENST00000494067 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.42
CTDSP1-212ENST00000494067 WRNQ14191 1432 aaPredicted RBP eCLIP23.88■■□□□ 1.41
CTDSP1-212ENST00000494067 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
CTDSP1-212ENST00000494067 ARAP1Q96P48 1450 aa23.83■■□□□ 1.41
CTDSP1-212ENST00000494067 CHMP7Q8WUX9 453 aaPredicted RBP23.78■■□□□ 1.4
CTDSP1-212ENST00000494067 ADAMTS12P58397 1594 aa23.75■■□□□ 1.39
CTDSP1-212ENST00000494067 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
CTDSP1-212ENST00000494067 GRIN2AQ12879 1464 aa23.68■■□□□ 1.38
CTDSP1-212ENST00000494067 CEP170Q5SW79 1584 aa23.66■■□□□ 1.38
CTDSP1-212ENST00000494067 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.37
CTDSP1-212ENST00000494067 ERCC6L2Q5T890 1561 aa23.61■■□□□ 1.37
CTDSP1-212ENST00000494067 NUP160Q12769 1436 aa23.59■■□□□ 1.37
CTDSP1-212ENST00000494067 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
CTDSP1-212ENST00000494067 SHROOM2Q13796 1616 aa23.52■■□□□ 1.36
CTDSP1-212ENST00000494067 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
CTDSP1-212ENST00000494067 TRHP20396 242 aaPredicted RBP23.4■■□□□ 1.34
CTDSP1-212ENST00000494067 IGF1RP08069 1367 aa23.39■■□□□ 1.33
CTDSP1-212ENST00000494067 KIF27Q86VH2 1401 aa23.36■■□□□ 1.33
CTDSP1-212ENST00000494067 CUL7Q14999 1698 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms