Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 IL17RC-208ENST00000434756 946 ntTSL 521.06■□□□□ 0.963e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.943e-7■□□□□ 10.9
DDX55Q8NHQ9 ARFGAP1-222ENST00000549076 913 ntTSL 220.83■□□□□ 0.933e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-207ENST00000424206 949 ntTSL 320.81■□□□□ 0.923e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-227ENST00000494365 2499 ntTSL 220.8■□□□□ 0.923e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-225ENST00000483582 2467 ntTSL 1 (best)20.53■□□□□ 0.883e-7■□□□□ 10.9
DDX55Q8NHQ9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.07■□□□□ 0.83e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.743e-7■□□□□ 10.9
DDX55Q8NHQ9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.49■□□□□ 0.713e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-219ENST00000466046 2547 ntTSL 219.13■□□□□ 0.653e-7■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.653e-7■□□□□ 10.9
DDX55Q8NHQ9 HGS-208ENST00000572392 824 ntTSL 519■□□□□ 0.633e-7■□□□□ 10.9
DDX55Q8NHQ9 ARFGAP1-209ENST00000518794 2727 ntTSL 1 (best)18.72■□□□□ 0.593e-7■□□□□ 10.9
DDX55Q8NHQ9 USP20-204ENST00000472108 1811 ntTSL 218.6■□□□□ 0.573e-7■□□□□ 10.9
DDX55Q8NHQ9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.533e-7■□□□□ 10.9
DDX55Q8NHQ9 AC004922.1-202ENST00000441989 1702 ntTSL 218.03■□□□□ 0.484e-14■□□□□ 10.9
DDX55Q8NHQ9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.433e-7■□□□□ 10.9
DDX55Q8NHQ9 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17■□□□□ 0.313e-7■□□□□ 10.9
DDX55Q8NHQ9 C21orf59-204ENST00000425336 873 ntTSL 216.98■□□□□ 0.313e-7■□□□□ 10.9
DDX55Q8NHQ9 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.274e-14■□□□□ 10.9
DDX55Q8NHQ9 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.273e-7■□□□□ 10.9
DDX55Q8NHQ9 ARPC1A-202ENST00000432786 1516 ntTSL 516.71■□□□□ 0.274e-14■□□□□ 10.9
DDX55Q8NHQ9 DOT1L-204ENST00000457590 2907 ntTSL 516.39■□□□□ 0.213e-7■□□□□ 10.9
DDX55Q8NHQ9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.194e-14■□□□□ 10.9
DDX55Q8NHQ9 IL17RC-223ENST00000478206 597 ntTSL 1 (best)15.93■□□□□ 0.143e-7■□□□□ 10.9
DDX55Q8NHQ9 C21orf59-208ENST00000483315 1872 ntTSL 215.35■□□□□ 0.053e-7■□□□□ 10.9
DDX55Q8NHQ9 C21orf59-205ENST00000431599 417 ntTSL 313.95□□□□□ -0.183e-7■□□□□ 10.9
DDX55Q8NHQ9 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.183e-7■□□□□ 10.9
DDX55Q8NHQ9 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.193e-7■□□□□ 10.9
DDX55Q8NHQ9 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.233e-7■□□□□ 10.9
DDX55Q8NHQ9 FBXW2-204ENST00000493559 2154 ntTSL 213.5□□□□□ -0.253e-7■□□□□ 10.9
DDX55Q8NHQ9 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.383e-7■□□□□ 10.9
DDX55Q8NHQ9 CELSR2-201ENST00000271332 10534 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.383e-7■□□□□ 10.9
DDX55Q8NHQ9 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.043e-7■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-204ENST00000392427 3369 ntTSL 1 (best) BASIC14.54□□□□□ -0.084e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-205ENST00000445890 3677 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.114e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-203ENST00000368128 4456 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.354e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-224ENST00000530481 3914 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.444e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-232ENST00000628542 4247 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.524e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-201ENST00000337057 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.584e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-216ENST00000527411 4186 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.634e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-228ENST00000531410 2926 ntTSL 5 BASIC8.73□□□□□ -1.014e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-206ENST00000452150 2994 ntTSL 1 (best)8.7□□□□□ -1.024e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.334e-6■□□□□ 10.9
DDX55Q8NHQ9 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.81□□□□□ -1.484e-6■□□□□ 10.9
DDX55Q8NHQ9 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.182e-18■□□□□ 10.9
DDX55Q8NHQ9 CCL20-203ENST00000473642 680 ntTSL 27.07□□□□□ -1.282e-18■□□□□ 10.9
DDX55Q8NHQ9 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.392e-18■□□□□ 10.9
DDX55Q8NHQ9 ACADVL-215ENST00000578809 709 ntTSL 217.23■□□□□ 0.355e-9■□□□□ 10.9
DDX55Q8NHQ9 ACADVL-211ENST00000578319 718 ntTSL 316.25■□□□□ 0.195e-9■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.263e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-215ENST00000558914 2342 ntTSL 216.27■□□□□ 0.23e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-203ENST00000396941 2402 ntTSL 2 BASIC14.15□□□□□ -0.143e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.173e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-205ENST00000557802 4202 ntTSL 1 (best)13.59□□□□□ -0.233e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-202ENST00000396936 2469 ntTSL 1 (best) BASIC13.18□□□□□ -0.33e-8■□□□□ 10.9
DDX55Q8NHQ9 DCAF11-201ENST00000326009 2570 ntTSL 1 (best)13.09□□□□□ -0.313e-8■□□□□ 10.9
DDX55Q8NHQ9 ITIH2-201ENST00000358415 3193 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.863e-36■□□□□ 10.9
DDX55Q8NHQ9 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.14■■□□□ 1.934e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.62■■□□□ 1.534e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.18■■□□□ 1.464e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.564e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-214ENST00000565143 2301 ntTSL 1 (best)13.44□□□□□ -0.264e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-222ENST00000568883 1863 ntTSL 5 BASIC13.35□□□□□ -0.274e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-219ENST00000567118 2254 ntTSL 212.89□□□□□ -0.354e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.394e-24■□□□□ 10.9
DDX55Q8NHQ9 PKM-212ENST00000564440 3016 ntTSL 1 (best)10.31□□□□□ -0.764e-24■□□□□ 10.9
DDX55Q8NHQ9 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)16.76■□□□□ 0.272e-7■□□□□ 10.9
DDX55Q8NHQ9 TMEM214-208ENST00000460665 1967 ntTSL 216.27■□□□□ 0.24e-8■□□□□ 10.9
DDX55Q8NHQ9 YWHAG-201ENST00000307630 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.678e-14■□□□□ 10.9
DDX55Q8NHQ9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21e-13■□□□□ 10.9
DDX55Q8NHQ9 PA2G4-206ENST00000552766 1085 ntTSL 5 BASIC14.37□□□□□ -0.111e-13■□□□□ 10.9
DDX55Q8NHQ9 PNPLA2-204ENST00000529255 1301 ntTSL 1 (best)21.07■□□□□ 0.963e-7■□□□□ 10.9
DDX55Q8NHQ9 PNPLA2-202ENST00000525250 2726 ntTSL 220.11■□□□□ 0.813e-7■□□□□ 10.9
DDX55Q8NHQ9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.773e-7■□□□□ 10.9
DDX55Q8NHQ9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.563e-6■□□□□ 10.9
DDX55Q8NHQ9 SYMPK-210ENST00000598329 1000 ntTSL 315.27■□□□□ 0.046e-7■□□□□ 10.9
DDX55Q8NHQ9 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC37.29■■■■□ 3.562e-13■□□□□ 10.9
DDX55Q8NHQ9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.813e-18■□□□□ 10.9
DDX55Q8NHQ9 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.6■□□□□ 0.253e-18■□□□□ 10.9
DDX55Q8NHQ9 METTL26-207ENST00000456420 755 ntTSL 320.63■□□□□ 0.897e-14■□□□□ 10.9
DDX55Q8NHQ9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.126e-11■□□□□ 10.9
DDX55Q8NHQ9 POLD1-206ENST00000596221 412 ntTSL 220.34■□□□□ 0.856e-11■□□□□ 10.9
DDX55Q8NHQ9 POLD1-209ENST00000597963 737 ntTSL 220.14■□□□□ 0.816e-11■□□□□ 10.9
DDX55Q8NHQ9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.532e-23■□□□□ 10.8
DDX55Q8NHQ9 MDK-208ENST00000481047 775 ntTSL 228.35■■■□□ 2.136e-10■□□□□ 10.8
DDX55Q8NHQ9 MDK-212ENST00000533952 477 ntAPPRIS ALT2 TSL 324.7■■□□□ 1.546e-10■□□□□ 10.8
DDX55Q8NHQ9 MDK-210ENST00000490240 603 ntTSL 1 (best)23.46■■□□□ 1.356e-10■□□□□ 10.8
DDX55Q8NHQ9 MLST8-227ENST00000567282 854 ntTSL 329■■■□□ 2.236e-8■□□□□ 10.8
DDX55Q8NHQ9 MLST8-235ENST00000570224 1044 ntTSL 317.05■□□□□ 0.326e-8■□□□□ 10.8
DDX55Q8NHQ9 MLST8-204ENST00000561651 703 ntTSL 215.48■□□□□ 0.076e-8■□□□□ 10.8
DDX55Q8NHQ9 MLST8-213ENST00000563107 733 ntTSL 515.33■□□□□ 0.046e-8■□□□□ 10.8
DDX55Q8NHQ9 MLST8-223ENST00000565717 947 ntTSL 515.08■□□□□ 06e-8■□□□□ 10.8
DDX55Q8NHQ9 SSR2-216ENST00000531790 476 ntTSL 58.78□□□□□ -14e-6■□□□□ 10.8
DDX55Q8NHQ9 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.051e-8■□□□□ 10.8
DDX55Q8NHQ9 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.671e-8■□□□□ 10.8
DDX55Q8NHQ9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.445e-9■□□□□ 10.8
DDX55Q8NHQ9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.125e-9■□□□□ 10.8
DDX55Q8NHQ9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.481e-16■□□□□ 10.8
DDX55Q8NHQ9 CTSD-203ENST00000429746 690 ntTSL 321.21■□□□□ 0.993e-12■□□□□ 10.8
Retrieved 100 of 15,504 protein–RNA pairs in 146.2 ms