RNA–Protein interactions for RNA: ENST00000564440.5

PKM-212, Transcript of pyruvate kinase M1/2, humanhuman

TSL 1 (best)

Gene PKM, Length 3,016 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-212ENST00000564440 NISCHQ9Y2I1 1504 aa21.3■■□□□ 1
PKM-212ENST00000564440 CCDC180Q9P1Z9 1646 aa19.22■□□□□ 0.67
PKM-212ENST00000564440 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
PKM-212ENST00000564440 DCAF1Q9Y4B6 1507 aa17.99■□□□□ 0.47
PKM-212ENST00000564440 ZCCHC6Q5VYS8 1495 aaKnown RBP17.86■□□□□ 0.45
PKM-212ENST00000564440 ABCC9O60706 1549 aa17.85■□□□□ 0.45
PKM-212ENST00000564440 NACADO15069 1562 aa17.85■□□□□ 0.45
PKM-212ENST00000564440 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
PKM-212ENST00000564440 UNC13AQ9UPW8 1703 aa17.45■□□□□ 0.38
PKM-212ENST00000564440 SHROOM4Q9ULL8 1493 aa17.4■□□□□ 0.38
PKM-212ENST00000564440 DCAF8L2P0C7V8 631 aa17.4■□□□□ 0.38
PKM-212ENST00000564440 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
PKM-212ENST00000564440 SCRIBQ14160 1630 aa16.98■□□□□ 0.31
PKM-212ENST00000564440 EIF4G1Q04637 1599 aaKnown RBP16.63■□□□□ 0.25
PKM-212ENST00000564440 PEG3Q9GZU2 1588 aa16.63■□□□□ 0.25
PKM-212ENST00000564440 SUPT5HO00267 1087 aaKnown RBP16.56■□□□□ 0.24
PKM-212ENST00000564440 SMARCA4P51532 1647 aa16.53■□□□□ 0.24
PKM-212ENST00000564440 BAZ1AQ9NRL2 1556 aaPredicted RBP16.52■□□□□ 0.24
PKM-212ENST00000564440 CC2D2AQ9P2K1 1620 aa16.47■□□□□ 0.23
PKM-212ENST00000564440 PABPN1Q86U42 306 aaKnown RBP eCLIP16.45■□□□□ 0.223e-11■□□□□ 10.4
PKM-212ENST00000564440 HMGXB3Q12766 1538 aa16.44■□□□□ 0.22
PKM-212ENST00000564440 SMARCA2P51531 1590 aa16.41■□□□□ 0.22
PKM-212ENST00000564440 NCAPD3P42695 1498 aa16.37■□□□□ 0.21
PKM-212ENST00000564440 CECR2Q9BXF3 1484 aa16.32■□□□□ 0.2
PKM-212ENST00000564440 ATAD2BQ9ULI0 1458 aa16.29■□□□□ 0.2
PKM-212ENST00000564440 MROH2BQ7Z745 1585 aa16.27■□□□□ 0.2
PKM-212ENST00000564440 RSF1Q96T23 1441 aaPredicted RBP16.14■□□□□ 0.18
PKM-212ENST00000564440 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
PKM-212ENST00000564440 TOP2AP11388 1531 aaKnown RBP16.14■□□□□ 0.17
PKM-212ENST00000564440 WIZO95785 1651 aa16.12■□□□□ 0.17
PKM-212ENST00000564440 BAZ1BQ9UIG0 1483 aaKnown RBP16.06■□□□□ 0.16
PKM-212ENST00000564440 PRDM2Q13029 1718 aa16.06■□□□□ 0.16
PKM-212ENST00000564440 LAMC3Q9Y6N6 1575 aa15.96■□□□□ 0.15
PKM-212ENST00000564440 CFTRP13569 1480 aa15.8■□□□□ 0.12
PKM-212ENST00000564440 CCDC88BA6NC98 1476 aa15.74■□□□□ 0.11
PKM-212ENST00000564440 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
PKM-212ENST00000564440 CADPSQ9ULU8 1353 aa15.71■□□□□ 0.11
PKM-212ENST00000564440 KIF21AQ7Z4S6 1674 aa15.68■□□□□ 0.1
PKM-212ENST00000564440 EHMT2Q96KQ7 1210 aa15.65■□□□□ 0.1
PKM-212ENST00000564440 WDR62O43379 1518 aa15.62■□□□□ 0.09
PKM-212ENST00000564440 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
PKM-212ENST00000564440 CUX2O14529 1486 aa15.6■□□□□ 0.09
PKM-212ENST00000564440 NESP48681 1621 aa15.56■□□□□ 0.08
PKM-212ENST00000564440 WDR97A6NE52 1622 aa15.54■□□□□ 0.08
PKM-212ENST00000564440 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
PKM-212ENST00000564440 MRC2Q9UBG0 1479 aa15.52■□□□□ 0.08
PKM-212ENST00000564440 FANCD2Q9BXW9 1451 aa15.51■□□□□ 0.07
PKM-212ENST00000564440 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
PKM-212ENST00000564440 CHIC1Q5VXU3 224 aa15.49■□□□□ 0.07
PKM-212ENST00000564440 DNMBPQ6XZF7 1577 aa15.48■□□□□ 0.07
PKM-212ENST00000564440 BIVM-ERCC5R4GMW8 1640 aa15.48■□□□□ 0.07
PKM-212ENST00000564440 FAM9AQ8IZU1 332 aaPredicted RBP15.46■□□□□ 0.06
PKM-212ENST00000564440 URB2Q14146 1524 aaKnown RBP15.41■□□□□ 0.06
PKM-212ENST00000564440 ERCC6Q03468 1493 aa15.38■□□□□ 0.05
PKM-212ENST00000564440 TOP2BQ02880 1626 aa15.36■□□□□ 0.05
PKM-212ENST00000564440 TOPBP1Q92547 1522 aa15.35■□□□□ 0.05
PKM-212ENST00000564440 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
PKM-212ENST00000564440 LOC105371045A0A1W2PR82 267 aa15.33■□□□□ 0.05
PKM-212ENST00000564440 CUX1P39880 1505 aa15.31■□□□□ 0.04
PKM-212ENST00000564440 IFT140Q96RY7 1462 aa15.27■□□□□ 0.03
PKM-212ENST00000564440 SYNJ1O43426 1573 aa15.22■□□□□ 0.03
PKM-212ENST00000564440 ABCA5Q8WWZ7 1642 aa15.21■□□□□ 0.03
PKM-212ENST00000564440 TRIM41Q8WV44 630 aa15.2■□□□□ 0.02
PKM-212ENST00000564440 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
PKM-212ENST00000564440 ABCA10Q8WWZ4 1543 aa15.19■□□□□ 0.02
PKM-212ENST00000564440 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.02
PKM-212ENST00000564440 FGD5Q6ZNL6 1462 aa15.14■□□□□ 0.01
PKM-212ENST00000564440 EIF4G3O43432 1585 aaKnown RBP15.13■□□□□ 0.01
PKM-212ENST00000564440 PBRM1Q86U86 1689 aa15.13■□□□□ 0.01
PKM-212ENST00000564440 ERICH3Q5RHP9 1530 aa15.07■□□□□ 0
PKM-212ENST00000564440 HRCP23327 699 aa15.05■□□□□ 0
PKM-212ENST00000564440 MAGI1Q96QZ7 1491 aaPredicted RBP15.02□□□□□ -0.01
PKM-212ENST00000564440 CUL7Q14999 1698 aa15.02□□□□□ -0.01
PKM-212ENST00000564440 SOGA1O94964 1423 aa15.01□□□□□ -0.01
PKM-212ENST00000564440 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
PKM-212ENST00000564440 RANGAP1P46060 587 aaPredicted RBP14.97□□□□□ -0.01
PKM-212ENST00000564440 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
PKM-212ENST00000564440 ZNF608Q9ULD9 1512 aaPredicted RBP14.96□□□□□ -0.01
PKM-212ENST00000564440 PPARGC1BQ86YN6 1023 aaKnown RBP14.96□□□□□ -0.01
PKM-212ENST00000564440 RAD54L2Q9Y4B4 1467 aa14.94□□□□□ -0.02
PKM-212ENST00000564440 CHD1O14646 1710 aa14.93□□□□□ -0.02
PKM-212ENST00000564440 GAPVD1Q14C86 1478 aa14.92□□□□□ -0.02
PKM-212ENST00000564440 TTBK1Q5TCY1 1321 aaPredicted RBP14.91□□□□□ -0.02
PKM-212ENST00000564440 CLASP1Q7Z460 1538 aa14.89□□□□□ -0.03
PKM-212ENST00000564440 SYNJ2O15056 1496 aa14.88□□□□□ -0.03
PKM-212ENST00000564440 EEA1Q15075 1411 aa14.87□□□□□ -0.03
PKM-212ENST00000564440 SHROOM2Q13796 1616 aa14.87□□□□□ -0.03
PKM-212ENST00000564440 KIF27Q86VH2 1401 aa14.83□□□□□ -0.04
PKM-212ENST00000564440 FHAD1B1AJZ9 1412 aa14.83□□□□□ -0.04
PKM-212ENST00000564440 PCGF6Q9BYE7 350 aa14.83□□□□□ -0.04
PKM-212ENST00000564440 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
PKM-212ENST00000564440 NUP160Q12769 1436 aa14.81□□□□□ -0.04
PKM-212ENST00000564440 AQRO60306 1485 aaKnown RBP eCLIP14.81□□□□□ -0.044e-9■■■■■ 37.6
PKM-212ENST00000564440 KIF21BO75037 1637 aa14.78□□□□□ -0.04
PKM-212ENST00000564440 RUSC2Q8N2Y8 1516 aa14.78□□□□□ -0.04
PKM-212ENST00000564440 GRIN2AQ12879 1464 aa14.77□□□□□ -0.04
PKM-212ENST00000564440 PRXQ9BXM0 1461 aa14.76□□□□□ -0.05
PKM-212ENST00000564440 CTTNBP2Q8WZ74 1663 aa14.75□□□□□ -0.05
PKM-212ENST00000564440 IGF1RP08069 1367 aa14.74□□□□□ -0.05
PKM-212ENST00000564440 CEP170Q5SW79 1584 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms