RNA–Protein interactions for RNA: ENST00000429746.1

CTSD-203, Transcript of cathepsin D, humanhuman

TSL 3

Gene CTSD, Length 690 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-203ENST00000429746 NISCHQ9Y2I1 1504 aa42.8■■■■■ 4.44
CTSD-203ENST00000429746 CCDC180Q9P1Z9 1646 aa38.05■■■■□ 3.68
CTSD-203ENST00000429746 ABCC9O60706 1549 aa37.15■■■■□ 3.54
CTSD-203ENST00000429746 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
CTSD-203ENST00000429746 NACADO15069 1562 aa35.72■■■■□ 3.31
CTSD-203ENST00000429746 ZCCHC6Q5VYS8 1495 aaKnown RBP35.69■■■■□ 3.3
CTSD-203ENST00000429746 MYO15BQ96JP2 1530 aa35.58■■■■□ 3.29
CTSD-203ENST00000429746 DCAF8L2P0C7V8 631 aa35.44■■■■□ 3.26
CTSD-203ENST00000429746 DCAF1Q9Y4B6 1507 aa35.43■■■■□ 3.26
CTSD-203ENST00000429746 UNC13AQ9UPW8 1703 aa35.11■■■■□ 3.21
CTSD-203ENST00000429746 BICRAQ9NZM4 1560 aa34.83■■■■□ 3.17
CTSD-203ENST00000429746 SCRIBQ14160 1630 aa34.67■■■■□ 3.14
CTSD-203ENST00000429746 PABPN1Q86U42 306 aaKnown RBP eCLIP34.66■■■■□ 3.14
CTSD-203ENST00000429746 DNAJC5BQ9UF47 199 aa34.57■■■■□ 3.12
CTSD-203ENST00000429746 SHROOM4Q9ULL8 1493 aa34.33■■■■□ 3.09
CTSD-203ENST00000429746 EIF4G1Q04637 1599 aaKnown RBP33.81■■■■□ 3
CTSD-203ENST00000429746 CC2D2AQ9P2K1 1620 aa33.66■■■□□ 2.98
CTSD-203ENST00000429746 CECR2Q9BXF3 1484 aa33.49■■■□□ 2.95
CTSD-203ENST00000429746 SMARCA4P51532 1647 aa33.22■■■□□ 2.91
CTSD-203ENST00000429746 BAZ1AQ9NRL2 1556 aaPredicted RBP33.11■■■□□ 2.89
CTSD-203ENST00000429746 ATAD2BQ9ULI0 1458 aa33.02■■■□□ 2.88
CTSD-203ENST00000429746 MROH2BQ7Z745 1585 aa33.01■■■□□ 2.88
CTSD-203ENST00000429746 NCAPD3P42695 1498 aa32.99■■■□□ 2.87
CTSD-203ENST00000429746 PEG3Q9GZU2 1588 aa32.95■■■□□ 2.86
CTSD-203ENST00000429746 SMARCA2P51531 1590 aa32.91■■■□□ 2.86
CTSD-203ENST00000429746 HMGXB3Q12766 1538 aa32.84■■■□□ 2.85
CTSD-203ENST00000429746 BAZ1BQ9UIG0 1483 aaKnown RBP32.66■■■□□ 2.82
CTSD-203ENST00000429746 WIZO95785 1651 aa32.65■■■□□ 2.82
CTSD-203ENST00000429746 RSF1Q96T23 1441 aaPredicted RBP32.61■■■□□ 2.81
CTSD-203ENST00000429746 TOP2AP11388 1531 aaKnown RBP32.27■■■□□ 2.76
CTSD-203ENST00000429746 NESP48681 1621 aa32.22■■■□□ 2.75
CTSD-203ENST00000429746 ERCC6Q03468 1493 aa32.1■■■□□ 2.73
CTSD-203ENST00000429746 LAMC3Q9Y6N6 1575 aa32.09■■■□□ 2.73
CTSD-203ENST00000429746 CUX2O14529 1486 aa32.03■■■□□ 2.72
CTSD-203ENST00000429746 CADPSQ9ULU8 1353 aa31.97■■■□□ 2.71
CTSD-203ENST00000429746 CCDC88BA6NC98 1476 aa31.89■■■□□ 2.7
CTSD-203ENST00000429746 KIF21AQ7Z4S6 1674 aa31.86■■■□□ 2.69
CTSD-203ENST00000429746 CFTRP13569 1480 aa31.85■■■□□ 2.69
CTSD-203ENST00000429746 THOC2Q8NI27 1593 aaKnown RBP31.78■■■□□ 2.68
CTSD-203ENST00000429746 PDS5BQ9NTI5 1447 aa31.77■■■□□ 2.68
CTSD-203ENST00000429746 DNAJC5Q9H3Z4 198 aa31.66■■■□□ 2.66
CTSD-203ENST00000429746 PRDM2Q13029 1718 aa31.64■■■□□ 2.66
CTSD-203ENST00000429746 FANCD2Q9BXW9 1451 aa31.61■■■□□ 2.65
CTSD-203ENST00000429746 SUPT5HO00267 1087 aaKnown RBP31.57■■■□□ 2.64
CTSD-203ENST00000429746 CEP164Q9UPV0 1460 aa31.54■■■□□ 2.64
CTSD-203ENST00000429746 MRC2Q9UBG0 1479 aa31.52■■■□□ 2.64
CTSD-203ENST00000429746 WDR62O43379 1518 aa31.49■■■□□ 2.63
CTSD-203ENST00000429746 URB2Q14146 1524 aaKnown RBP31.39■■■□□ 2.61
CTSD-203ENST00000429746 TOPBP1Q92547 1522 aa31.15■■■□□ 2.58
CTSD-203ENST00000429746 DNMBPQ6XZF7 1577 aa31.11■■■□□ 2.57
CTSD-203ENST00000429746 ABCC8Q09428 1581 aa31.04■■■□□ 2.56
CTSD-203ENST00000429746 CUX1P39880 1505 aa30.97■■■□□ 2.55
CTSD-203ENST00000429746 POLA1P09884 1462 aaPredicted RBP30.9■■■□□ 2.54
CTSD-203ENST00000429746 IFT140Q96RY7 1462 aa30.89■■■□□ 2.54
CTSD-203ENST00000429746 TARBP1Q13395 1621 aaKnown RBP30.88■■■□□ 2.53
CTSD-203ENST00000429746 ZNF608Q9ULD9 1512 aaPredicted RBP30.84■■■□□ 2.53
CTSD-203ENST00000429746 FGD5Q6ZNL6 1462 aa30.8■■■□□ 2.52
CTSD-203ENST00000429746 RAD54L2Q9Y4B4 1467 aa30.75■■■□□ 2.51
CTSD-203ENST00000429746 EIF4G3O43432 1585 aaKnown RBP30.71■■■□□ 2.51
CTSD-203ENST00000429746 BIVM-ERCC5R4GMW8 1640 aa30.71■■■□□ 2.51
CTSD-203ENST00000429746 SYNJ1O43426 1573 aa30.71■■■□□ 2.51
CTSD-203ENST00000429746 TOP2BQ02880 1626 aa30.68■■■□□ 2.5
CTSD-203ENST00000429746 SOGA1O94964 1423 aa30.67■■■□□ 2.5
CTSD-203ENST00000429746 WDR97A6NE52 1622 aa30.67■■■□□ 2.5
CTSD-203ENST00000429746 WRNQ14191 1432 aaPredicted RBP eCLIP30.66■■■□□ 2.5
CTSD-203ENST00000429746 OSCARQ8IYS5 282 aa30.62■■■□□ 2.49
CTSD-203ENST00000429746 AQRO60306 1485 aaKnown RBP eCLIP30.61■■■□□ 2.494e-6■■■■□ 26.1
CTSD-203ENST00000429746 TDRD9Q8NDG6 1382 aaKnown RBP30.53■■■□□ 2.48
CTSD-203ENST00000429746 ABCA10Q8WWZ4 1543 aa30.52■■■□□ 2.48
CTSD-203ENST00000429746 ABCA5Q8WWZ7 1642 aa30.46■■■□□ 2.47
CTSD-203ENST00000429746 PBRM1Q86U86 1689 aa30.36■■■□□ 2.45
CTSD-203ENST00000429746 GAPVD1Q14C86 1478 aa30.34■■■□□ 2.45
CTSD-203ENST00000429746 GRIN2BQ13224 1484 aa30.33■■■□□ 2.45
CTSD-203ENST00000429746 CHD1O14646 1710 aa30.33■■■□□ 2.45
CTSD-203ENST00000429746 SNAPC4Q5SXM2 1469 aa30.32■■■□□ 2.44
CTSD-203ENST00000429746 MAGI1Q96QZ7 1491 aaPredicted RBP30.27■■■□□ 2.44
CTSD-203ENST00000429746 TRIM41Q8WV44 630 aa30.25■■■□□ 2.43
CTSD-203ENST00000429746 SYNJ2O15056 1496 aa30.16■■■□□ 2.42
CTSD-203ENST00000429746 ERICH3Q5RHP9 1530 aa30.13■■■□□ 2.41
CTSD-203ENST00000429746 ADAMTS12P58397 1594 aa30.13■■■□□ 2.41
CTSD-203ENST00000429746 RIMBP3CA6NJZ7 1639 aa30.11■■■□□ 2.41
CTSD-203ENST00000429746 RIMBP3BA6NNM3 1639 aa30.11■■■□□ 2.41
CTSD-203ENST00000429746 RIMBP3Q9UFD9 1639 aa30.11■■■□□ 2.41
CTSD-203ENST00000429746 FBLN2P98095 1184 aa30.08■■■□□ 2.41
CTSD-203ENST00000429746 ARHGEF11O15085 1522 aa30.05■■■□□ 2.4
CTSD-203ENST00000429746 CLASP1Q7Z460 1538 aa30.04■■■□□ 2.4
CTSD-203ENST00000429746 FHAD1B1AJZ9 1412 aa29.99■■■□□ 2.39
CTSD-203ENST00000429746 CHMP7Q8WUX9 453 aaPredicted RBP29.99■■■□□ 2.39
CTSD-203ENST00000429746 GRIN2AQ12879 1464 aa29.99■■■□□ 2.39
CTSD-203ENST00000429746 KIF27Q86VH2 1401 aa29.97■■■□□ 2.39
CTSD-203ENST00000429746 IGF1RP08069 1367 aa29.94■■■□□ 2.38
CTSD-203ENST00000429746 CEP170Q5SW79 1584 aa29.9■■■□□ 2.38
CTSD-203ENST00000429746 NUP160Q12769 1436 aa29.9■■■□□ 2.38
CTSD-203ENST00000429746 RUSC2Q8N2Y8 1516 aa29.87■■■□□ 2.37
CTSD-203ENST00000429746 CUL7Q14999 1698 aa29.85■■■□□ 2.37
CTSD-203ENST00000429746 CYB5RLQ6IPT4 315 aa29.8■■■□□ 2.36
CTSD-203ENST00000429746 ARAP1Q96P48 1450 aa29.75■■■□□ 2.35
CTSD-203ENST00000429746 SHROOM2Q13796 1616 aa29.72■■■□□ 2.35
CTSD-203ENST00000429746 CARMIL1Q5VZK9 1371 aa29.69■■■□□ 2.34
CTSD-203ENST00000429746 ERCC6L2Q5T890 1561 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms