RNA–Protein interactions for RNA: ENST00000228872.8

CDKN1B-201, Transcript of cyclin dependent kinase inhibitor 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDKN1B, Length 2,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN1B-201ENST00000228872 NISCHQ9Y2I1 1504 aa36.73■■■■□ 3.47
CDKN1B-201ENST00000228872 CCDC180Q9P1Z9 1646 aa32.1■■■□□ 2.73
CDKN1B-201ENST00000228872 ZCCHC6Q5VYS8 1495 aaKnown RBP30.88■■■□□ 2.53
CDKN1B-201ENST00000228872 DCAF1Q9Y4B6 1507 aa30.44■■■□□ 2.46
CDKN1B-201ENST00000228872 ABCC9O60706 1549 aa30.13■■■□□ 2.41
CDKN1B-201ENST00000228872 DCAF8L2P0C7V8 631 aa30.1■■■□□ 2.41
CDKN1B-201ENST00000228872 MYO15BQ96JP2 1530 aa30.07■■■□□ 2.4
CDKN1B-201ENST00000228872 SHROOM4Q9ULL8 1493 aa30■■■□□ 2.39
CDKN1B-201ENST00000228872 HRCP23327 699 aa29.83■■■□□ 2.37
CDKN1B-201ENST00000228872 NACADO15069 1562 aa29.83■■■□□ 2.37
CDKN1B-201ENST00000228872 RB1CC1Q8TDY2 1594 aa29.55■■■□□ 2.32
CDKN1B-201ENST00000228872 SUPT5HO00267 1087 aaKnown RBP29.5■■■□□ 2.31
CDKN1B-201ENST00000228872 SCRIBQ14160 1630 aa29.41■■■□□ 2.3
CDKN1B-201ENST00000228872 PCGF6Q9BYE7 350 aa29.18■■■□□ 2.26
CDKN1B-201ENST00000228872 CHIC1Q5VXU3 224 aa29.11■■■□□ 2.25
CDKN1B-201ENST00000228872 PPARGC1BQ86YN6 1023 aaKnown RBP29.11■■■□□ 2.25
CDKN1B-201ENST00000228872 UNC13AQ9UPW8 1703 aa29.04■■■□□ 2.24
CDKN1B-201ENST00000228872 BICRAQ9NZM4 1560 aa28.66■■■□□ 2.18
CDKN1B-201ENST00000228872 PELP1Q8IZL8 1130 aaKnown RBP28.63■■■□□ 2.17
CDKN1B-201ENST00000228872 CECR2Q9BXF3 1484 aa28.48■■■□□ 2.15
CDKN1B-201ENST00000228872 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
CDKN1B-201ENST00000228872 BAZ1AQ9NRL2 1556 aaPredicted RBP28.37■■■□□ 2.13
CDKN1B-201ENST00000228872 TRIM26Q12899 539 aaPredicted RBP28.36■■■□□ 2.13
CDKN1B-201ENST00000228872 PABPN1Q86U42 306 aaKnown RBP eCLIP28.36■■■□□ 2.13
CDKN1B-201ENST00000228872 MROH2BQ7Z745 1585 aa28.36■■■□□ 2.13
CDKN1B-201ENST00000228872 LOC105371045A0A1W2PR82 267 aa28.33■■■□□ 2.13
CDKN1B-201ENST00000228872 SMARCA4P51532 1647 aa28.25■■■□□ 2.11
CDKN1B-201ENST00000228872 WIZO95785 1651 aa28.15■■■□□ 2.1
CDKN1B-201ENST00000228872 ZEB1P37275 1124 aaPredicted RBP28.14■■■□□ 2.09
CDKN1B-201ENST00000228872 SCAF1Q9H7N4 1312 aaKnown RBP28.12■■■□□ 2.09
CDKN1B-201ENST00000228872 PEG3Q9GZU2 1588 aa27.95■■■□□ 2.06
CDKN1B-201ENST00000228872 TOP2AP11388 1531 aaKnown RBP27.88■■■□□ 2.05
CDKN1B-201ENST00000228872 EIF4G1Q04637 1599 aaKnown RBP27.78■■■□□ 2.04
CDKN1B-201ENST00000228872 SMARCA2P51531 1590 aa27.75■■■□□ 2.03
CDKN1B-201ENST00000228872 ATAD2BQ9ULI0 1458 aa27.72■■■□□ 2.03
CDKN1B-201ENST00000228872 BAZ1BQ9UIG0 1483 aaKnown RBP27.56■■■□□ 2
CDKN1B-201ENST00000228872 CCDC88BA6NC98 1476 aa27.55■■■□□ 2
CDKN1B-201ENST00000228872 HMGXB3Q12766 1538 aa27.51■■□□□ 1.99
CDKN1B-201ENST00000228872 NCAPD3P42695 1498 aa27.49■■□□□ 1.99
CDKN1B-201ENST00000228872 ACIN1Q9UKV3 1341 aaKnown RBP27.49■■□□□ 1.99
CDKN1B-201ENST00000228872 MYT1Q01538 1121 aa27.49■■□□□ 1.99
CDKN1B-201ENST00000228872 NEUROD1Q13562 356 aa27.38■■□□□ 1.97
CDKN1B-201ENST00000228872 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
CDKN1B-201ENST00000228872 CC2D2AQ9P2K1 1620 aa27.35■■□□□ 1.97
CDKN1B-201ENST00000228872 FAM9AQ8IZU1 332 aaPredicted RBP27.24■■□□□ 1.95
CDKN1B-201ENST00000228872 GTF3C3Q9Y5Q9 886 aa27.21■■□□□ 1.95
CDKN1B-201ENST00000228872 CENPBP07199 599 aaPredicted RBP27.15■■□□□ 1.94
CDKN1B-201ENST00000228872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.09■■□□□ 1.93
CDKN1B-201ENST00000228872 DIEXFQ68CQ4 756 aaKnown RBP27.05■■□□□ 1.92
CDKN1B-201ENST00000228872 CCER1Q8TC90 406 aaPredicted RBP27.05■■□□□ 1.92
CDKN1B-201ENST00000228872 EHMT2Q96KQ7 1210 aa27.03■■□□□ 1.92
CDKN1B-201ENST00000228872 ABCC8Q09428 1581 aa26.98■■□□□ 1.91
CDKN1B-201ENST00000228872 PRDM2Q13029 1718 aa26.9■■□□□ 1.9
CDKN1B-201ENST00000228872 CFTRP13569 1480 aa26.9■■□□□ 1.9
CDKN1B-201ENST00000228872 WRNQ14191 1432 aaPredicted RBP eCLIP26.8■■□□□ 1.88
CDKN1B-201ENST00000228872 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.87
CDKN1B-201ENST00000228872 SYNJ1O43426 1573 aa26.72■■□□□ 1.87
CDKN1B-201ENST00000228872 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
CDKN1B-201ENST00000228872 TOP2BQ02880 1626 aa26.65■■□□□ 1.86
CDKN1B-201ENST00000228872 ZNF316A6NFI3 1004 aaPredicted RBP26.6■■□□□ 1.85
CDKN1B-201ENST00000228872 LAMC3Q9Y6N6 1575 aa26.59■■□□□ 1.85
CDKN1B-201ENST00000228872 CUX1P39880 1505 aa26.52■■□□□ 1.84
CDKN1B-201ENST00000228872 YTHDC1Q96MU7 727 aaKnown RBP26.51■■□□□ 1.83
CDKN1B-201ENST00000228872 DNAJC5BQ9UF47 199 aa26.51■■□□□ 1.83
CDKN1B-201ENST00000228872 NESP48681 1621 aa26.49■■□□□ 1.83
CDKN1B-201ENST00000228872 EEA1Q15075 1411 aa26.48■■□□□ 1.83
CDKN1B-201ENST00000228872 FANCD2Q9BXW9 1451 aa26.47■■□□□ 1.83
CDKN1B-201ENST00000228872 SOGA1O94964 1423 aa26.45■■□□□ 1.83
CDKN1B-201ENST00000228872 TTBK1Q5TCY1 1321 aaPredicted RBP26.42■■□□□ 1.82
CDKN1B-201ENST00000228872 MIER1Q8N108 512 aa26.37■■□□□ 1.81
CDKN1B-201ENST00000228872 RUSC2Q8N2Y8 1516 aa26.36■■□□□ 1.81
CDKN1B-201ENST00000228872 CEP162Q5TB80 1403 aa26.33■■□□□ 1.81
CDKN1B-201ENST00000228872 PDS5BQ9NTI5 1447 aa26.31■■□□□ 1.8
CDKN1B-201ENST00000228872 CEP164Q9UPV0 1460 aa26.31■■□□□ 1.8
CDKN1B-201ENST00000228872 DNMBPQ6XZF7 1577 aa26.3■■□□□ 1.8
CDKN1B-201ENST00000228872 KIF21AQ7Z4S6 1674 aa26.27■■□□□ 1.8
CDKN1B-201ENST00000228872 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
CDKN1B-201ENST00000228872 TOPBP1Q92547 1522 aa26.21■■□□□ 1.79
CDKN1B-201ENST00000228872 FGD5Q6ZNL6 1462 aa26.2■■□□□ 1.79
CDKN1B-201ENST00000228872 TNIKQ9UKE5 1360 aa26.2■■□□□ 1.78
CDKN1B-201ENST00000228872 KIF21BO75037 1637 aa26.17■■□□□ 1.78
CDKN1B-201ENST00000228872 URB2Q14146 1524 aaKnown RBP26.15■■□□□ 1.78
CDKN1B-201ENST00000228872 KIF27Q86VH2 1401 aa26.11■■□□□ 1.77
CDKN1B-201ENST00000228872 GOLGA3Q08378 1498 aa26.1■■□□□ 1.77
CDKN1B-201ENST00000228872 POLA1P09884 1462 aaPredicted RBP26.08■■□□□ 1.77
CDKN1B-201ENST00000228872 CLSPNQ9HAW4 1339 aa26.03■■□□□ 1.76
CDKN1B-201ENST00000228872 UBTFP17480 764 aaKnown RBP26.02■■□□□ 1.76
CDKN1B-201ENST00000228872 CUX2O14529 1486 aa26.01■■□□□ 1.75
CDKN1B-201ENST00000228872 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
CDKN1B-201ENST00000228872 WDR97A6NE52 1622 aa26■■□□□ 1.75
CDKN1B-201ENST00000228872 MRC2Q9UBG0 1479 aa26■■□□□ 1.75
CDKN1B-201ENST00000228872 ERICH3Q5RHP9 1530 aa25.99■■□□□ 1.75
CDKN1B-201ENST00000228872 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
CDKN1B-201ENST00000228872 SUPT16HQ9Y5B9 1047 aaKnown RBP25.97■■□□□ 1.75
CDKN1B-201ENST00000228872 HNRNPUL2Q1KMD3 747 aaKnown RBP25.96■■□□□ 1.75
CDKN1B-201ENST00000228872 RAD54L2Q9Y4B4 1467 aa25.96■■□□□ 1.75
CDKN1B-201ENST00000228872 RAPGEF2Q9Y4G8 1499 aa25.93■■□□□ 1.74
CDKN1B-201ENST00000228872 WDR62O43379 1518 aa25.9■■□□□ 1.74
CDKN1B-201ENST00000228872 IGF1RP08069 1367 aa25.86■■□□□ 1.73
CDKN1B-201ENST00000228872 TARBP1Q13395 1621 aaKnown RBP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms