Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.78□□□□□ -1.481e-6■□□□□ 11.1
DDX55Q8NHQ9 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.53□□□□□ -1.521e-6■□□□□ 11.1
DDX55Q8NHQ9 IPO5-223ENST00000491555 3688 ntTSL 25.46□□□□□ -1.531e-6■□□□□ 11.1
DDX55Q8NHQ9 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.21□□□□□ -1.741e-6■□□□□ 11.1
DDX55Q8NHQ9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC21.32■■□□□ 15e-7■□□□□ 11.1
DDX55Q8NHQ9 LAMP1-203ENST00000472564 5242 ntTSL 218.74■□□□□ 0.593e-7■□□□□ 11.1
DDX55Q8NHQ9 PLOD1-201ENST00000196061 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.312e-9■□□□□ 11
DDX55Q8NHQ9 PLOD1-209ENST00000491536 639 ntTSL 311.7□□□□□ -0.542e-9■□□□□ 11
DDX55Q8NHQ9 PLOD1-207ENST00000481933 2339 ntTSL 210.99□□□□□ -0.652e-9■□□□□ 11
DDX55Q8NHQ9 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.121e-7■□□□□ 11
DDX55Q8NHQ9 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC14.88□□□□□ -0.031e-7■□□□□ 11
DDX55Q8NHQ9 ZMYM3-209ENST00000489332 5723 ntTSL 512.53□□□□□ -0.41e-7■□□□□ 11
DDX55Q8NHQ9 ZMYM3-201ENST00000314425 5536 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.61e-7■□□□□ 11
DDX55Q8NHQ9 ZMYM3-205ENST00000373984 5253 ntTSL 5 BASIC11.17□□□□□ -0.621e-7■□□□□ 11
DDX55Q8NHQ9 SNRPD3-204ENST00000439775 640 ntTSL 320.18■□□□□ 0.821e-8■□□□□ 11
DDX55Q8NHQ9 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.541e-8■□□□□ 11
DDX55Q8NHQ9 SNRPD3-203ENST00000404603 715 ntTSL 59.9□□□□□ -0.821e-8■□□□□ 11
DDX55Q8NHQ9 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC8.72□□□□□ -1.011e-8■□□□□ 11
DDX55Q8NHQ9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.221e-6■□□□□ 11
DDX55Q8NHQ9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.04■□□□□ 0.961e-6■□□□□ 11
DDX55Q8NHQ9 RPL21-209ENST00000485756 675 ntTSL 24.01□□□□□ -1.778e-21■□□□□ 11
DDX55Q8NHQ9 GSK3A-204ENST00000493059 761 ntTSL 214.52□□□□□ -0.093e-11■□□□□ 11
DDX55Q8NHQ9 PLEKHJ1-209ENST00000588545 889 ntTSL 226.89■■□□□ 1.99e-8■□□□□ 11
DDX55Q8NHQ9 PLEKHJ1-210ENST00000588633 379 ntTSL 520.33■□□□□ 0.859e-8■□□□□ 11
DDX55Q8NHQ9 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.28■■□□□ 14e-11■□□□□ 11
DDX55Q8NHQ9 SPCS1-204ENST00000474945 981 ntTSL 216.73■□□□□ 0.274e-11■□□□□ 11
DDX55Q8NHQ9 SPCS1-206ENST00000619898 4254 ntTSL 1 (best) BASIC13.06□□□□□ -0.324e-11■□□□□ 11
DDX55Q8NHQ9 SPCS1-205ENST00000602728 832 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.454e-11■□□□□ 11
DDX55Q8NHQ9 SPCS1-202ENST00000423431 822 ntTSL 3 BASIC11.39□□□□□ -0.594e-11■□□□□ 11
DDX55Q8NHQ9 INO80E-208ENST00000567065 883 ntTSL 318.5■□□□□ 0.551e-7■□□□□ 11
DDX55Q8NHQ9 INO80E-209ENST00000567254 625 ntTSL 2 BASIC15.98■□□□□ 0.151e-7■□□□□ 11
DDX55Q8NHQ9 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.684e-7■□□□□ 11
DDX55Q8NHQ9 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC33.03■■■□□ 2.883e-16■□□□□ 11
DDX55Q8NHQ9 MAPK3-214ENST00000490298 1718 ntTSL 532.24■■■□□ 2.753e-16■□□□□ 11
DDX55Q8NHQ9 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC32.23■■■□□ 2.753e-16■□□□□ 11
DDX55Q8NHQ9 MAPK3-207ENST00000466521 1878 ntTSL 532.23■■■□□ 2.753e-16■□□□□ 11
DDX55Q8NHQ9 HAGHL-214ENST00000567414 735 ntTSL 225.04■■□□□ 1.63e-9■□□□□ 11
DDX55Q8NHQ9 HAGHL-216ENST00000568141 740 ntTSL 221.67■■□□□ 1.063e-9■□□□□ 11
DDX55Q8NHQ9 TAF15-203ENST00000603393 1214 ntTSL 1 (best)20.02■□□□□ 0.83e-9■□□□□ 11
DDX55Q8NHQ9 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.63■□□□□ 0.739e-7■□□□□ 11
DDX55Q8NHQ9 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.693e-9■□□□□ 11
DDX55Q8NHQ9 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.183e-9■□□□□ 11
DDX55Q8NHQ9 MRPS35-203ENST00000538315 1715 ntTSL 2 BASIC13.43□□□□□ -0.262e-13■□□□□ 11
DDX55Q8NHQ9 MRPS35-201ENST00000081029 1888 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.382e-13■□□□□ 11
DDX55Q8NHQ9 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.463e-9■□□□□ 11
DDX55Q8NHQ9 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.122e-60■□□□□ 11
DDX55Q8NHQ9 RPL27-203ENST00000587478 584 ntTSL 225.62■■□□□ 1.692e-7■□□□□ 11
DDX55Q8NHQ9 RPL27-208ENST00000593262 1872 ntTSL 220.09■□□□□ 0.812e-7■□□□□ 11
DDX55Q8NHQ9 RPL27-201ENST00000253788 490 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.482e-7■□□□□ 11
DDX55Q8NHQ9 RPL27-204ENST00000588830 318 ntTSL 29.61□□□□□ -0.872e-7■□□□□ 11
DDX55Q8NHQ9 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC9.18□□□□□ -0.942e-7■□□□□ 11
DDX55Q8NHQ9 SETD5-203ENST00000402198 6827 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.529e-7■□□□□ 11
DDX55Q8NHQ9 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.019e-7■□□□□ 11
DDX55Q8NHQ9 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC7.71□□□□□ -1.179e-7■□□□□ 11
DDX55Q8NHQ9 SETD5-202ENST00000399686 3362 ntTSL 57.58□□□□□ -1.29e-7■□□□□ 11
DDX55Q8NHQ9 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.36■□□□□ 0.372e-24■□□□□ 11
DDX55Q8NHQ9 DUSP6-201ENST00000279488 4400 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.532e-24■□□□□ 11
DDX55Q8NHQ9 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.42■□□□□ 0.74e-10■□□□□ 11
DDX55Q8NHQ9 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.43■□□□□ 0.544e-10■□□□□ 11
DDX55Q8NHQ9 DCXR-203ENST00000577532 573 ntTSL 310.28□□□□□ -0.769e-8■□□□□ 11
DDX55Q8NHQ9 ACADVL-222ENST00000579894 429 ntTSL 217.21■□□□□ 0.353e-10■□□□□ 11
DDX55Q8NHQ9 TRIM28-215ENST00000601150 915 ntTSL 320.45■□□□□ 0.867e-7■□□□□ 11
DDX55Q8NHQ9 TRIM28-212ENST00000597995 702 ntTSL 215.74■□□□□ 0.117e-7■□□□□ 11
DDX55Q8NHQ9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.781e-6■□□□□ 11
DDX55Q8NHQ9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.61■■□□□ 1.531e-6■□□□□ 11
DDX55Q8NHQ9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.281e-6■□□□□ 11
DDX55Q8NHQ9 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC19.43■□□□□ 0.71e-6■□□□□ 11
DDX55Q8NHQ9 SLC25A39-213ENST00000591006 2217 ntTSL 214.54□□□□□ -0.081e-6■□□□□ 11
DDX55Q8NHQ9 HPN-207ENST00000599363 1828 ntTSL 523.13■■□□□ 1.292e-12■□□□□ 11
DDX55Q8NHQ9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.682e-12■□□□□ 11
DDX55Q8NHQ9 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.52e-12■□□□□ 11
DDX55Q8NHQ9 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.41■□□□□ 0.382e-12■□□□□ 11
DDX55Q8NHQ9 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.43□□□□□ -0.18e-12■□□□□ 11
DDX55Q8NHQ9 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.118e-12■□□□□ 11
DDX55Q8NHQ9 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.198e-12■□□□□ 11
DDX55Q8NHQ9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.671e-14■□□□□ 11
DDX55Q8NHQ9 RHBG-208ENST00000620376 1984 ntTSL 224.47■■□□□ 1.512e-6■□□□□ 11
DDX55Q8NHQ9 RHBG-201ENST00000451864 1927 ntTSL 224.35■■□□□ 1.492e-6■□□□□ 11
DDX55Q8NHQ9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.371e-14■□□□□ 11
DDX55Q8NHQ9 KRT18-206ENST00000549078 2088 ntTSL 522.44■■□□□ 1.181e-14■□□□□ 11
DDX55Q8NHQ9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.93■■□□□ 1.11e-14■□□□□ 11
DDX55Q8NHQ9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.62e-6■□□□□ 11
DDX55Q8NHQ9 RHBG-205ENST00000612897 1862 ntTSL 1 (best)17.65■□□□□ 0.422e-6■□□□□ 11
DDX55Q8NHQ9 RHBG-206ENST00000613460 1912 ntTSL 1 (best)16.65■□□□□ 0.262e-6■□□□□ 11
DDX55Q8NHQ9 KRT18-205ENST00000548496 695 ntTSL 214.5□□□□□ -0.091e-14■□□□□ 11
DDX55Q8NHQ9 RHBG-207ENST00000618120 2424 ntTSL 214.29□□□□□ -0.122e-6■□□□□ 11
DDX55Q8NHQ9 ILVBL-202ENST00000524779 771 ntTSL 222.35■■□□□ 1.172e-9■□□□□ 11
DDX55Q8NHQ9 SQLE-205ENST00000521232 711 ntTSL 321.01■□□□□ 0.952e-9■□□□□ 11
DDX55Q8NHQ9 PMM1-205ENST00000472620 1576 ntTSL 517.18■□□□□ 0.342e-9■□□□□ 11
DDX55Q8NHQ9 PMM1-208ENST00000485648 1405 ntTSL 516.57■□□□□ 0.242e-9■□□□□ 11
DDX55Q8NHQ9 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.152e-9■□□□□ 11
DDX55Q8NHQ9 PMM1-203ENST00000463617 2538 ntTSL 215.41■□□□□ 0.062e-9■□□□□ 11
DDX55Q8NHQ9 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.062e-9■□□□□ 11
DDX55Q8NHQ9 PMM1-207ENST00000482178 2020 ntTSL 214.24□□□□□ -0.132e-9■□□□□ 11
DDX55Q8NHQ9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.793e-6■□□□□ 11
DDX55Q8NHQ9 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.23■□□□□ 0.353e-6■□□□□ 11
DDX55Q8NHQ9 ATP13A3-202ENST00000429136 3729 ntTSL 1 (best)5.69□□□□□ -1.59e-7■□□□□ 11
DDX55Q8NHQ9 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.47□□□□□ -1.539e-7■□□□□ 11
DDX55Q8NHQ9 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.719e-7■□□□□ 11
DDX55Q8NHQ9 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.059e-7■□□□□ 11
Retrieved 100 of 15,504 protein–RNA pairs in 101.4 ms