RNA–Protein interactions for RNA: ENST00000521232.1

SQLE-205, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-205ENST00000521232 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
SQLE-205ENST00000521232 CCDC180Q9P1Z9 1646 aa37.53■■■■□ 3.6
SQLE-205ENST00000521232 ABCC9O60706 1549 aa37.1■■■■□ 3.53
SQLE-205ENST00000521232 RB1CC1Q8TDY2 1594 aa35.52■■■■□ 3.28
SQLE-205ENST00000521232 NACADO15069 1562 aa35.41■■■■□ 3.26
SQLE-205ENST00000521232 DCAF8L2P0C7V8 631 aa35.32■■■■□ 3.24
SQLE-205ENST00000521232 MYO15BQ96JP2 1530 aa35.1■■■■□ 3.21
SQLE-205ENST00000521232 ZCCHC6Q5VYS8 1495 aaKnown RBP34.94■■■■□ 3.18
SQLE-205ENST00000521232 DCAF1Q9Y4B6 1507 aa34.8■■■■□ 3.16
SQLE-205ENST00000521232 UNC13AQ9UPW8 1703 aa34.72■■■■□ 3.15
SQLE-205ENST00000521232 PABPN1Q86U42 306 aaKnown RBP eCLIP34.64■■■■□ 3.14
SQLE-205ENST00000521232 DNAJC5BQ9UF47 199 aa34.48■■■■□ 3.11
SQLE-205ENST00000521232 BICRAQ9NZM4 1560 aa34.48■■■■□ 3.11
SQLE-205ENST00000521232 SCRIBQ14160 1630 aa34.19■■■■□ 3.06
SQLE-205ENST00000521232 SHROOM4Q9ULL8 1493 aa34.07■■■■□ 3.05
SQLE-205ENST00000521232 EIF4G1Q04637 1599 aaKnown RBP33.59■■■□□ 2.97
SQLE-205ENST00000521232 CC2D2AQ9P2K1 1620 aa33.55■■■□□ 2.96
SQLE-205ENST00000521232 CECR2Q9BXF3 1484 aa33.39■■■□□ 2.94
SQLE-205ENST00000521232 NCAPD3P42695 1498 aa32.71■■■□□ 2.83
SQLE-205ENST00000521232 SMARCA4P51532 1647 aa32.69■■■□□ 2.82
SQLE-205ENST00000521232 ATAD2BQ9ULI0 1458 aa32.65■■■□□ 2.82
SQLE-205ENST00000521232 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
SQLE-205ENST00000521232 SMARCA2P51531 1590 aa32.57■■■□□ 2.8
SQLE-205ENST00000521232 HMGXB3Q12766 1538 aa32.46■■■□□ 2.79
SQLE-205ENST00000521232 PEG3Q9GZU2 1588 aa32.41■■■□□ 2.78
SQLE-205ENST00000521232 MROH2BQ7Z745 1585 aa32.41■■■□□ 2.78
SQLE-205ENST00000521232 BAZ1BQ9UIG0 1483 aaKnown RBP32.32■■■□□ 2.76
SQLE-205ENST00000521232 WIZO95785 1651 aa32.02■■■□□ 2.72
SQLE-205ENST00000521232 NESP48681 1621 aa32■■■□□ 2.71
SQLE-205ENST00000521232 ERCC6Q03468 1493 aa31.99■■■□□ 2.71
SQLE-205ENST00000521232 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
SQLE-205ENST00000521232 LAMC3Q9Y6N6 1575 aa31.86■■■□□ 2.69
SQLE-205ENST00000521232 CUX2O14529 1486 aa31.82■■■□□ 2.68
SQLE-205ENST00000521232 CADPSQ9ULU8 1353 aa31.73■■■□□ 2.67
SQLE-205ENST00000521232 PDS5BQ9NTI5 1447 aa31.69■■■□□ 2.66
SQLE-205ENST00000521232 TOP2AP11388 1531 aaKnown RBP31.65■■■□□ 2.66
SQLE-205ENST00000521232 KIF21AQ7Z4S6 1674 aa31.59■■■□□ 2.65
SQLE-205ENST00000521232 THOC2Q8NI27 1593 aaKnown RBP31.57■■■□□ 2.64
SQLE-205ENST00000521232 CFTRP13569 1480 aa31.46■■■□□ 2.63
SQLE-205ENST00000521232 DNAJC5Q9H3Z4 198 aa31.36■■■□□ 2.61
SQLE-205ENST00000521232 MRC2Q9UBG0 1479 aa31.35■■■□□ 2.61
SQLE-205ENST00000521232 FANCD2Q9BXW9 1451 aa31.33■■■□□ 2.61
SQLE-205ENST00000521232 CCDC88BA6NC98 1476 aa31.33■■■□□ 2.61
SQLE-205ENST00000521232 CEP164Q9UPV0 1460 aa31.32■■■□□ 2.6
SQLE-205ENST00000521232 WDR62O43379 1518 aa31.27■■■□□ 2.6
SQLE-205ENST00000521232 PRDM2Q13029 1718 aa31.13■■■□□ 2.57
SQLE-205ENST00000521232 URB2Q14146 1524 aaKnown RBP31.04■■■□□ 2.56
SQLE-205ENST00000521232 SUPT5HO00267 1087 aaKnown RBP30.81■■■□□ 2.52
SQLE-205ENST00000521232 ABCC8Q09428 1581 aa30.79■■■□□ 2.52
SQLE-205ENST00000521232 TOPBP1Q92547 1522 aa30.79■■■□□ 2.52
SQLE-205ENST00000521232 DNMBPQ6XZF7 1577 aa30.71■■■□□ 2.51
SQLE-205ENST00000521232 IFT140Q96RY7 1462 aa30.7■■■□□ 2.5
SQLE-205ENST00000521232 ZNF608Q9ULD9 1512 aaPredicted RBP30.59■■■□□ 2.49
SQLE-205ENST00000521232 POLA1P09884 1462 aaPredicted RBP30.5■■■□□ 2.47
SQLE-205ENST00000521232 TARBP1Q13395 1621 aaKnown RBP30.49■■■□□ 2.47
SQLE-205ENST00000521232 OSCARQ8IYS5 282 aa30.49■■■□□ 2.47
SQLE-205ENST00000521232 CUX1P39880 1505 aa30.42■■■□□ 2.46
SQLE-205ENST00000521232 EIF4G3O43432 1585 aaKnown RBP30.41■■■□□ 2.46
SQLE-205ENST00000521232 SOGA1O94964 1423 aa30.39■■■□□ 2.46
SQLE-205ENST00000521232 AQRO60306 1485 aaKnown RBP eCLIP30.38■■■□□ 2.452e-6■■■■■ 26.9
SQLE-205ENST00000521232 RAD54L2Q9Y4B4 1467 aa30.38■■■□□ 2.45
SQLE-205ENST00000521232 FGD5Q6ZNL6 1462 aa30.36■■■□□ 2.45
SQLE-205ENST00000521232 TDRD9Q8NDG6 1382 aaKnown RBP30.27■■■□□ 2.44
SQLE-205ENST00000521232 WDR97A6NE52 1622 aa30.22■■■□□ 2.43
SQLE-205ENST00000521232 CHD1O14646 1710 aa30.1■■■□□ 2.41
SQLE-205ENST00000521232 FBLN2P98095 1184 aa30.09■■■□□ 2.41
SQLE-205ENST00000521232 TRIM41Q8WV44 630 aa30.09■■■□□ 2.41
SQLE-205ENST00000521232 WRNQ14191 1432 aaPredicted RBP eCLIP30.08■■■□□ 2.41
SQLE-205ENST00000521232 ABCA10Q8WWZ4 1543 aa30.07■■■□□ 2.4
SQLE-205ENST00000521232 GRIN2BQ13224 1484 aa30.07■■■□□ 2.4
SQLE-205ENST00000521232 SNAPC4Q5SXM2 1469 aa30.06■■■□□ 2.4
SQLE-205ENST00000521232 TOP2BQ02880 1626 aa30.05■■■□□ 2.4
SQLE-205ENST00000521232 BIVM-ERCC5R4GMW8 1640 aa30.04■■■□□ 2.4
SQLE-205ENST00000521232 GAPVD1Q14C86 1478 aa30.02■■■□□ 2.4
SQLE-205ENST00000521232 MAGI1Q96QZ7 1491 aaPredicted RBP30.02■■■□□ 2.4
SQLE-205ENST00000521232 SYNJ1O43426 1573 aa30.01■■■□□ 2.39
SQLE-205ENST00000521232 RIMBP3CA6NJZ7 1639 aa29.97■■■□□ 2.39
SQLE-205ENST00000521232 RIMBP3BA6NNM3 1639 aa29.97■■■□□ 2.39
SQLE-205ENST00000521232 RIMBP3Q9UFD9 1639 aa29.97■■■□□ 2.39
SQLE-205ENST00000521232 CHMP7Q8WUX9 453 aaPredicted RBP29.97■■■□□ 2.39
SQLE-205ENST00000521232 ABCA5Q8WWZ7 1642 aa29.96■■■□□ 2.39
SQLE-205ENST00000521232 PBRM1Q86U86 1689 aa29.94■■■□□ 2.38
SQLE-205ENST00000521232 ARHGEF11O15085 1522 aa29.93■■■□□ 2.38
SQLE-205ENST00000521232 SYNJ2O15056 1496 aa29.92■■■□□ 2.38
SQLE-205ENST00000521232 CLASP1Q7Z460 1538 aa29.8■■■□□ 2.36
SQLE-205ENST00000521232 CYB5RLQ6IPT4 315 aa29.73■■■□□ 2.35
SQLE-205ENST00000521232 ERICH3Q5RHP9 1530 aa29.7■■■□□ 2.34
SQLE-205ENST00000521232 ADAMTS12P58397 1594 aa29.68■■■□□ 2.34
SQLE-205ENST00000521232 FHAD1B1AJZ9 1412 aa29.67■■■□□ 2.34
SQLE-205ENST00000521232 GRIN2AQ12879 1464 aa29.67■■■□□ 2.34
SQLE-205ENST00000521232 ARAP1Q96P48 1450 aa29.67■■■□□ 2.34
SQLE-205ENST00000521232 NUP160Q12769 1436 aa29.57■■■□□ 2.32
SQLE-205ENST00000521232 CEP170Q5SW79 1584 aa29.53■■■□□ 2.32
SQLE-205ENST00000521232 KIF27Q86VH2 1401 aa29.49■■■□□ 2.31
SQLE-205ENST00000521232 IGF1RP08069 1367 aa29.47■■■□□ 2.31
SQLE-205ENST00000521232 SHROOM2Q13796 1616 aa29.38■■■□□ 2.29
SQLE-205ENST00000521232 ERCC6L2Q5T890 1561 aa29.35■■■□□ 2.29
SQLE-205ENST00000521232 CUL7Q14999 1698 aa29.33■■■□□ 2.29
SQLE-205ENST00000521232 JPH4Q96JJ6 628 aa29.32■■■□□ 2.28
SQLE-205ENST00000521232 CARMIL1Q5VZK9 1371 aa29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms