RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NISCHQ9Y2I1 1504 aa31.51■■■□□ 2.63
TRIM28-212ENST00000597995 ABCC9O60706 1549 aa28.41■■■□□ 2.14
TRIM28-212ENST00000597995 CCDC180Q9P1Z9 1646 aa28.32■■■□□ 2.12
TRIM28-212ENST00000597995 RB1CC1Q8TDY2 1594 aa27.02■■□□□ 1.92
TRIM28-212ENST00000597995 NACADO15069 1562 aa26.83■■□□□ 1.89
TRIM28-212ENST00000597995 DNAJC5BQ9UF47 199 aa26.79■■□□□ 1.88
TRIM28-212ENST00000597995 DCAF8L2P0C7V8 631 aa26.63■■□□□ 1.85
TRIM28-212ENST00000597995 MYO15BQ96JP2 1530 aa26.46■■□□□ 1.83
TRIM28-212ENST00000597995 PABPN1Q86U42 306 aaKnown RBP eCLIP26.45■■□□□ 1.82
TRIM28-212ENST00000597995 UNC13AQ9UPW8 1703 aa26.35■■□□□ 1.81
TRIM28-212ENST00000597995 BICRAQ9NZM4 1560 aa26.22■■□□□ 1.79
TRIM28-212ENST00000597995 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.77
TRIM28-212ENST00000597995 DCAF1Q9Y4B6 1507 aa26.06■■□□□ 1.76
TRIM28-212ENST00000597995 SHROOM4Q9ULL8 1493 aa25.92■■□□□ 1.74
TRIM28-212ENST00000597995 SCRIBQ14160 1630 aa25.74■■□□□ 1.71
TRIM28-212ENST00000597995 CC2D2AQ9P2K1 1620 aa25.66■■□□□ 1.7
TRIM28-212ENST00000597995 CECR2Q9BXF3 1484 aa25.63■■□□□ 1.69
TRIM28-212ENST00000597995 EIF4G1Q04637 1599 aaKnown RBP25.59■■□□□ 1.69
TRIM28-212ENST00000597995 NCAPD3P42695 1498 aa24.79■■□□□ 1.56
TRIM28-212ENST00000597995 DNAJC5Q9H3Z4 198 aa24.74■■□□□ 1.55
TRIM28-212ENST00000597995 ATAD2BQ9ULI0 1458 aa24.67■■□□□ 1.54
TRIM28-212ENST00000597995 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
TRIM28-212ENST00000597995 CUX2O14529 1486 aa24.59■■□□□ 1.53
TRIM28-212ENST00000597995 SMARCA4P51532 1647 aa24.57■■□□□ 1.52
TRIM28-212ENST00000597995 HMGXB3Q12766 1538 aa24.56■■□□□ 1.52
TRIM28-212ENST00000597995 ERCC6Q03468 1493 aa24.55■■□□□ 1.52
TRIM28-212ENST00000597995 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
TRIM28-212ENST00000597995 BAZ1BQ9UIG0 1483 aaKnown RBP24.4■■□□□ 1.5
TRIM28-212ENST00000597995 PEG3Q9GZU2 1588 aa24.38■■□□□ 1.49
TRIM28-212ENST00000597995 NESP48681 1621 aa24.36■■□□□ 1.49
TRIM28-212ENST00000597995 MROH2BQ7Z745 1585 aa24.25■■□□□ 1.47
TRIM28-212ENST00000597995 LAMC3Q9Y6N6 1575 aa24.22■■□□□ 1.47
TRIM28-212ENST00000597995 THOC2Q8NI27 1593 aaKnown RBP24.14■■□□□ 1.45
TRIM28-212ENST00000597995 PDS5BQ9NTI5 1447 aa24.11■■□□□ 1.45
TRIM28-212ENST00000597995 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
TRIM28-212ENST00000597995 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
TRIM28-212ENST00000597995 WIZO95785 1651 aa23.93■■□□□ 1.42
TRIM28-212ENST00000597995 MRC2Q9UBG0 1479 aa23.87■■□□□ 1.41
TRIM28-212ENST00000597995 WDR62O43379 1518 aa23.82■■□□□ 1.4
TRIM28-212ENST00000597995 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
TRIM28-212ENST00000597995 RSF1Q96T23 1441 aaPredicted RBP23.74■■□□□ 1.39
TRIM28-212ENST00000597995 FANCD2Q9BXW9 1451 aa23.72■■□□□ 1.39
TRIM28-212ENST00000597995 CFTRP13569 1480 aa23.71■■□□□ 1.39
TRIM28-212ENST00000597995 TOP2AP11388 1531 aaKnown RBP23.65■■□□□ 1.38
TRIM28-212ENST00000597995 TRIM41Q8WV44 630 aa23.53■■□□□ 1.36
TRIM28-212ENST00000597995 URB2Q14146 1524 aaKnown RBP23.52■■□□□ 1.36
TRIM28-212ENST00000597995 OSCARQ8IYS5 282 aa23.47■■□□□ 1.35
TRIM28-212ENST00000597995 PRDM2Q13029 1718 aa23.4■■□□□ 1.34
TRIM28-212ENST00000597995 CCDC88BA6NC98 1476 aa23.4■■□□□ 1.34
TRIM28-212ENST00000597995 IFT140Q96RY7 1462 aa23.3■■□□□ 1.32
TRIM28-212ENST00000597995 ABCC8Q09428 1581 aa23.26■■□□□ 1.31
TRIM28-212ENST00000597995 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
TRIM28-212ENST00000597995 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
TRIM28-212ENST00000597995 DNMBPQ6XZF7 1577 aa23.15■■□□□ 1.3
TRIM28-212ENST00000597995 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
TRIM28-212ENST00000597995 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
TRIM28-212ENST00000597995 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
TRIM28-212ENST00000597995 EIF4G3O43432 1585 aaKnown RBP23.09■■□□□ 1.29
TRIM28-212ENST00000597995 TARBP1Q13395 1621 aaKnown RBP23.04■■□□□ 1.28
TRIM28-212ENST00000597995 ARHGEF11O15085 1522 aa23.03■■□□□ 1.28
TRIM28-212ENST00000597995 AQRO60306 1485 aaKnown RBP eCLIP23.03■■□□□ 1.281e-11■■■■■ 33.6
TRIM28-212ENST00000597995 POLA1P09884 1462 aaPredicted RBP23■■□□□ 1.27
TRIM28-212ENST00000597995 SOGA1O94964 1423 aa22.92■■□□□ 1.26
TRIM28-212ENST00000597995 CHD1O14646 1710 aa22.92■■□□□ 1.26
TRIM28-212ENST00000597995 RAD54L2Q9Y4B4 1467 aa22.91■■□□□ 1.26
TRIM28-212ENST00000597995 FBLN2P98095 1184 aa22.9■■□□□ 1.26
TRIM28-212ENST00000597995 CYB5RLQ6IPT4 315 aa22.9■■□□□ 1.26
TRIM28-212ENST00000597995 TDRD9Q8NDG6 1382 aaKnown RBP22.88■■□□□ 1.25
TRIM28-212ENST00000597995 WDR97A6NE52 1622 aa22.85■■□□□ 1.25
TRIM28-212ENST00000597995 FGD5Q6ZNL6 1462 aa22.84■■□□□ 1.25
TRIM28-212ENST00000597995 ARAP1Q96P48 1450 aa22.79■■□□□ 1.24
TRIM28-212ENST00000597995 CUX1P39880 1505 aa22.79■■□□□ 1.24
TRIM28-212ENST00000597995 SNAPC4Q5SXM2 1469 aa22.78■■□□□ 1.24
TRIM28-212ENST00000597995 MAGI1Q96QZ7 1491 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-212ENST00000597995 CHMP7Q8WUX9 453 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-212ENST00000597995 GRIN2BQ13224 1484 aa22.73■■□□□ 1.23
TRIM28-212ENST00000597995 CLASP1Q7Z460 1538 aa22.71■■□□□ 1.23
TRIM28-212ENST00000597995 SYNJ1O43426 1573 aa22.68■■□□□ 1.22
TRIM28-212ENST00000597995 SYNJ2O15056 1496 aa22.67■■□□□ 1.22
TRIM28-212ENST00000597995 TRHP20396 242 aaPredicted RBP22.67■■□□□ 1.22
TRIM28-212ENST00000597995 GAPVD1Q14C86 1478 aa22.63■■□□□ 1.21
TRIM28-212ENST00000597995 ABCA10Q8WWZ4 1543 aa22.6■■□□□ 1.21
TRIM28-212ENST00000597995 PBRM1Q86U86 1689 aa22.57■■□□□ 1.2
TRIM28-212ENST00000597995 SUPT5HO00267 1087 aaKnown RBP22.56■■□□□ 1.2
TRIM28-212ENST00000597995 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
TRIM28-212ENST00000597995 WRNQ14191 1432 aaPredicted RBP eCLIP22.49■■□□□ 1.19
TRIM28-212ENST00000597995 GRIN2AQ12879 1464 aa22.43■■□□□ 1.18
TRIM28-212ENST00000597995 TOP2BQ02880 1626 aa22.4■■□□□ 1.18
TRIM28-212ENST00000597995 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.18
TRIM28-212ENST00000597995 NUP160Q12769 1436 aa22.38■■□□□ 1.17
TRIM28-212ENST00000597995 ADAMTS12P58397 1594 aa22.37■■□□□ 1.17
TRIM28-212ENST00000597995 FHAD1B1AJZ9 1412 aa22.36■■□□□ 1.17
TRIM28-212ENST00000597995 CEP170Q5SW79 1584 aa22.33■■□□□ 1.16
TRIM28-212ENST00000597995 ERICH3Q5RHP9 1530 aa22.31■■□□□ 1.16
TRIM28-212ENST00000597995 ERCC6L2Q5T890 1561 aa22.3■■□□□ 1.16
TRIM28-212ENST00000597995 SHROOM2Q13796 1616 aa22.26■■□□□ 1.15
TRIM28-212ENST00000597995 JPH4Q96JJ6 628 aa22.18■■□□□ 1.14
TRIM28-212ENST00000597995 PRG4Q92954 1404 aaPredicted RBP22.15■■□□□ 1.14
TRIM28-212ENST00000597995 AEBP2Q6ZN18 517 aaPredicted RBP22.11■■□□□ 1.13
TRIM28-212ENST00000597995 RUSC2Q8N2Y8 1516 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms